Search found 24 matches

by ppy
Fri Nov 09, 2012 2:54 pm
Forum: Ground state
Topic: trouble with openmpi+(icc+ifort) when using paral_kgb
Replies: 4
Views: 4090

Re: trouble with openmpi+(icc+ifort) when using paral_kgb

I tried intel 12.1.7, it compiles but does not converge during an scf cycle...
by ppy
Fri Nov 09, 2012 9:01 am
Forum: Ground state
Topic: trouble with openmpi+(icc+ifort) when using paral_kgb
Replies: 4
Views: 4090

Re: trouble with openmpi+(icc+ifort) when using paral_kgb

Finally I tried to compile by installing gnu compiler 4.6 first, then intel compiler 12.1, following that openmpi 1.5.4 I worked for intel compilers 4.6.3 but then when I run my abinit-6.12.3, it simply doesn't converge in my scf cycle. Then I tried to compile with intel 12.1.4, but I got the follow...
by ppy
Mon Oct 29, 2012 12:14 pm
Forum: Ground state
Topic: trouble with openmpi+(icc+ifort) when using paral_kgb
Replies: 4
Views: 4090

Re: trouble with openmpi+(icc+ifort) when using paral_kgb

The problem now is that I have gcc 4.7 with which intel 12.1 doesn't seem to be compatible with...
http://software.intel.com/en-us/forums/topic/277969
So I will have to wait for a new version of intel compilers...
by ppy
Fri Oct 26, 2012 4:43 pm
Forum: Ground state
Topic: trouble with openmpi+(icc+ifort) when using paral_kgb
Replies: 4
Views: 4090

Re: trouble with openmpi+(icc+ifort) when using paral_kgb

I tried compiling with intel without mkl libraries but same problem. I tried also with LDA instead of GGA... In view of what Yann Pouillon suggest in this other post "HALF SOLVED] abinit6.12.3 crashes in more than 1 node", I will try another version of intel compilers (I used 13.0.). I wil...
by ppy
Fri Oct 26, 2012 2:58 pm
Forum: Ground state
Topic: trouble with openmpi+(icc+ifort) when using paral_kgb
Replies: 4
Views: 4090

trouble with openmpi+(icc+ifort) when using paral_kgb

Dear abinit users and developpers, I am trying to benchmark abinit on my station (16 cores). So I did several tests. I used abinit 6.12.3 - opempi 1.6.2 with gcc 4.7.2 (without particular configuration options except openmpi): everything runs perfectly - same + mkl library for fftw and linalgo : _ p...
by ppy
Thu Sep 20, 2012 12:08 pm
Forum: Configuring and compiling ABINIT
Topic: [SOLVED] Problem when compiling 6.12.3 with Openmpi
Replies: 18
Views: 16393

Re: [SOLVED] Problem when compiling 6.12.3 with Openmpi

Hi,
ok good news!
Do you have any expected date for the next abinit released?
Thanks
by ppy
Wed Sep 19, 2012 2:16 pm
Forum: Configuring and compiling ABINIT
Topic: [SOLVED] Problem when compiling 6.12.3 with Openmpi
Replies: 18
Views: 16393

Re: [SOLVED] Problem when compiling 6.12.3 with Openmpi

I finally got through it... I used openmpi, icc and ifort on openuse 12.1 (but I think I would have the same behavior with gcc and gfortran). Actually what happens to me was that during the compilation the lib for netcdf was not redirected in the good directory: it was directed to: ~/abinit/fallback...
by ppy
Thu Sep 13, 2012 10:24 pm
Forum: Configuring and compiling ABINIT
Topic: [SOLVED] Problem when compiling 6.12.3 with Openmpi
Replies: 18
Views: 16393

Re: [SOLVED] Problem when compiling 6.12.3 with Openmpi

Thanks a lot for your answer,
I will give a try to this flavor.
Actullay I tried to disable etsf-io with "--enable-etsf-io=no" but it looks like it was not a good idea since I got the same error message.
Thanks again, I will let you know about my progress...
PY
by ppy
Thu Sep 13, 2012 4:36 pm
Forum: Configuring and compiling ABINIT
Topic: [SOLVED] Problem when compiling 6.12.3 with Openmpi
Replies: 18
Views: 16393

Re: [SOLVED] Problem when compiling 6.12.3 with Openmpi

Sorry I forgot to paste the error message that I got from the compilation : abinit-6.12.3/fallbacks/exports/lib -lnetcdf" --with-moduledir="/home/prodhomme/Simulation/abinit-6.12.3/fallbacks/exports/include" configure: loading site script /usr/share/site/x86_64-unknown-linux-gnu check...
by ppy
Thu Sep 13, 2012 4:31 pm
Forum: Configuring and compiling ABINIT
Topic: [SOLVED] Problem when compiling 6.12.3 with Openmpi
Replies: 18
Views: 16393

Re: [SOLVED] Problem when compiling 6.12.3 with Openmpi

Dear Abinit users and developpers, I was wondering if anybody already tried to compile abinit 6.12.3 on opensuse with openmpi and GNU compilers. I guess I have some trouble because of the command: gfortran -V With compiler I got the following error message: gfortran: error: unrecognized option ‘-V’ ...
by ppy
Tue Mar 29, 2011 5:17 pm
Forum: Link to other codes
Topic: Generation of a PAW file for Gallium
Replies: 2
Views: 4578

Re: Generation of a PAW file for Gallium

Dear Alain, Thanks a lot for your answer, Actually for the moment I checked my PAW pseudopotential on GaAs only (since this material is much more known than pure Ga), the total energy is converged within 1mHa at a 26 Ha cutoff. First, I was afraid by such a high cutoff, since following the tutorial ...
by ppy
Tue Mar 29, 2011 3:55 pm
Forum: Configuring and compiling ABINIT
Topic: [bug fixed v6.6] running abinit-6.4.3 on IBM power6
Replies: 5
Views: 5060

Re: running abinit-6.4.3 on IBM power6

yes exactly,
you are welcome.
Pierre-Yves
by ppy
Mon Mar 28, 2011 5:44 pm
Forum: Link to other codes
Topic: Generation of a PAW file for Gallium
Replies: 2
Views: 4578

Generation of a PAW file for Gallium

Hi everybody, I am attempting to generate a PAW file for Gallium including 3s, 3p, 3d, 4s, 4p states. I include one more partial waves for each angular momentum, so that I get 3 partial waves for each angular momentum (I need more than 2 partial waves per angular momentum, since I plan to carry out ...
by ppy
Mon Mar 28, 2011 10:57 am
Forum: Configuring and compiling ABINIT
Topic: [bug fixed v6.6] running abinit-6.4.3 on IBM power6
Replies: 5
Views: 5060

Re: running abinit-6.4.3 on IBM power6

We (Markus Ramp and I) already told Xavier Gonze about this leak.
by ppy
Mon Mar 21, 2011 6:41 pm
Forum: Configuring and compiling ABINIT
Topic: [bug fixed v6.6] running abinit-6.4.3 on IBM power6
Replies: 5
Views: 5060

Re: running abinit-6.4.3 on IBM power6

It seems that there is a memory leak...
by ppy
Mon Feb 28, 2011 3:41 pm
Forum: Configuring and compiling ABINIT
Topic: [bug fixed v6.6] running abinit-6.4.3 on IBM power6
Replies: 5
Views: 5060

[bug fixed v6.6] running abinit-6.4.3 on IBM power6

Hi, I have compiled abinit-6.4.3 on IBM power6, I have been able to run the test successfully, then I run a G0W0 calculation with the plasmon pole model of Godby and Needs, which finished without any trouble. Then I tried to run some calculation without any plasmon pole, i.e. using the numerical int...
by ppy
Wed Jan 05, 2011 12:28 pm
Forum: Many-body perturbation theory
Topic: gwcalctyp 10 in version 6.4.2
Replies: 0
Views: 2499

gwcalctyp 10 in version 6.4.2

Dear abiniters, I do some GW calculations with abinit, I was using the version 6.0.4, but since I wanted to exploit the new features of abinit to save time (e.g. symsigma) I migrate to version 6.4.2. Everything is fine with both version as long as I use gwcalctyp<10 but then I tried gwcalctyp=10 wit...
by ppy
Mon Sep 06, 2010 11:15 am
Forum: Improving ABINIT
Topic: mistake in the derivative of the bessel function?
Replies: 6
Views: 5266

Re: mistake in the derivative of the bessel function?

Yes I think every thing is fine is the routine pspnl.f90.
Thanks for the advice, actually I am also looking at the fhi98pp code in the same time, but I probably did it too fast and I didn't notice my mistake.
Best Regards
by ppy
Sun Sep 05, 2010 5:33 pm
Forum: Improving ABINIT
Topic: mistake in the derivative of the bessel function?
Replies: 6
Views: 5266

Re: mistake in the derivative of the bessel function?

Thanks for your answer, I understood MY mistake, I was using the Bessel function of the first kind instead of the spherical ones. To answer your question I am trying to implement a pseudo empirical code, and I am trying to calculate the Kleinman-Bylander form of the pseudopotential, since I am a for...
by ppy
Fri Sep 03, 2010 10:46 am
Forum: Improving ABINIT
Topic: mistake in the derivative of the bessel function?
Replies: 6
Views: 5266

Re: mistake in the derivative of the bessel function?

Sorry for my second post, this is what happen when making several things at a time. But finally I am still thinking that my first post is right, The derivative of the Bessel function should be : $dj_n(qr)/dx = 2\pi r [ j_{n-1}(2\pi q r) - \frac{n}{2\pi q r} j_n(2\pi q r) dr]$ whereas the following f...
by ppy
Thu Sep 02, 2010 10:48 am
Forum: Improving ABINIT
Topic: mistake in the derivative of the bessel function?
Replies: 6
Views: 5266

Re: mistake in the derivative of the bessel function?

ok sorry, this is my mistake, the spline doesn't involve the first but the second derivative.
Sorry again for this message
PYP
by ppy
Thu Sep 02, 2010 10:22 am
Forum: Improving ABINIT
Topic: mistake in the derivative of the bessel function?
Replies: 6
Views: 5266

mistake in the derivative of the bessel function?

Hi, I am not sure but it seems to me that there is a mistake in the derivative of the bessel function during the settlement of the kleinman-bylander projector of the pseudopotential, in the file 65_psp/psp5nl.F90. The mistake would be at the lines : 316 396 473 The derivative of the Bessel function ...
by ppy
Wed Jun 30, 2010 7:12 pm
Forum: Configuring and compiling ABINIT
Topic: [SOLVED] atompaw compilation
Replies: 2
Views: 4877

Re: atompaw compilation

Thanks a lot !
It's working now.
Cheers
by ppy
Wed May 19, 2010 6:47 pm
Forum: Configuring and compiling ABINIT
Topic: [SOLVED] atompaw compilation
Replies: 2
Views: 4877

[SOLVED] atompaw compilation

I tried to compile atompaw with intel 11.1 compiler but it ends with this error message: anderson_realmix.f90:(.text+0x122c): undefined reference to `dgesdd_' basis.o: In function `basis_mp_diagonalizer_': basis.f90:(.text+0x36720): undefined reference to `dsyev_' basis.f90:(.text+0x3745c): undefine...