Dear Bernard,
now it works. Thanks a lot for the help!
All the best
Antonio
Search found 52 matches
- Wed Jun 02, 2021 11:47 pm
- Forum: Many-body perturbation theory
- Topic: no k-resolved spectral function as in DMFT tutorial [SOLVED]
- Replies: 2
- Views: 63796
- Tue May 04, 2021 8:53 pm
- Forum: Many-body perturbation theory
- Topic: no k-resolved spectral function as in DMFT tutorial [SOLVED]
- Replies: 2
- Views: 63796
no k-resolved spectral function as in DMFT tutorial [SOLVED]
Dear all, I use the version 9.4.0 of abinit. I have an issue in generating the k-resolved spectral function as in section 7 of the tutorial https://docs.abinit.org/tutorial/dmft/#7-electronic-structure-of-srvo3-k-resolved-spectral-function Despite I follow all the steps as described in the page, I d...
- Tue May 28, 2019 3:21 pm
- Forum: Response calculations
- Topic: Wrong Berry phase with LOBPCG
- Replies: 3
- Views: 3835
Re: Wrong Berry phase with LOBPCG
Dear Jordan,
is there any update on this? I can provide further tests if necessary.
Thanks.
Best
Antonio
is there any update on this? I can provide further tests if necessary.
Thanks.
Best
Antonio
- Wed Apr 10, 2019 10:47 am
- Forum: Response calculations
- Topic: Wrong Berry phase with LOBPCG
- Replies: 3
- Views: 3835
Re: Wrong Berry phase with LOBPCG
Dear Jordan, concerning your remarks: 1) yes, the energy is OK, 2) also the density is OK, and 3) forces are different only along the z direction because the electric field is applied along only the z direction Concerning the tests: 1) I cannot try it because with electric field the number of bands ...
- Mon Mar 25, 2019 5:53 pm
- Forum: Response calculations
- Topic: Wrong Berry phase with LOBPCG
- Replies: 3
- Views: 3835
Wrong Berry phase with LOBPCG
Dear all, I compiled abinit 8.10.2 on the anselm cluster using the following config parameters ./configure --prefix=/home/acamm/bin/abinit-8.10.2 \ --enable-mpi --enable-mpi-io --enable-optim="aggressive" \ --enable-mpi-inplace \ --enable-zdot-bugfix="yes" \ --with-fft-flavor=&qu...
- Sun Mar 03, 2019 1:48 pm
- Forum: Response calculations
- Topic: parallel berryopt -1 crashing with more than one node
- Replies: 17
- Views: 15126
Re: parallel berryopt -1 crashing with more than one node
Dear Eric,
I'm glad that the problem has been identified, I look forward to news. If I can be of any help with testing, please, let me know.
Best
Antonio
I'm glad that the problem has been identified, I look forward to news. If I can be of any help with testing, please, let me know.
Best
Antonio
- Sun Feb 24, 2019 6:14 pm
- Forum: Response calculations
- Topic: parallel berryopt -1 crashing with more than one node
- Replies: 17
- Views: 15126
Re: parallel berryopt -1 crashing with more than one node
Dear Antonio, It seems there might be a problem with memory, I'm looking at it. I would like to clarify one thing, you said that at some point you manage to get the error message that terminates by "the determinant of the overlap matrix is found to be 0.". The fix I've sent you should ove...
- Tue Feb 12, 2019 4:28 pm
- Forum: Response calculations
- Topic: parallel berryopt -1 crashing with more than one node
- Replies: 17
- Views: 15126
Re: parallel berryopt -1 crashing with more than one node
Dear Eric, I have an update on this. I get the same error if I run a single point in the presence of electric field (berryopt 4, efield 0.0 0.0 0.0005) and I specify by hand the parallel distribution; the error is the same, no matter the values I use for npkpt, npfft, npband, bandpp, either if I fol...
- Wed Feb 06, 2019 1:46 pm
- Forum: Response calculations
- Topic: parallel berryopt -1 crashing with more than one node
- Replies: 17
- Views: 15126
Re: parallel berryopt -1 crashing with more than one node
Dear Eric,
I recompiled abinit with both intel and gnu compilers after making the changes you suggested but I get exactly the same errors.
Antonio
I recompiled abinit with both intel and gnu compilers after making the changes you suggested but I get exactly the same errors.
Antonio
- Wed Jan 30, 2019 4:47 pm
- Forum: Response calculations
- Topic: parallel berryopt -1 crashing with more than one node
- Replies: 17
- Views: 15126
Re: parallel berryopt -1 crashing with more than one node
Dear Eric, each computing node on salomon cluster has 128 GB RAM. I tested the job on up to 10 nodes for a total of 240 cores (each node has 24 cores); I also tested the job on more nodes with less than 24 cores per node, so as to have more memory for the processes per node, but the job stops at the...
- Mon Jan 28, 2019 9:47 am
- Forum: Response calculations
- Topic: parallel berryopt -1 crashing with more than one node
- Replies: 17
- Views: 15126
Re: parallel berryopt -1 crashing with more than one node
Hi Eric,
no, I don't use PAWs, I use the norm-conserving pseudopotentials from the abinit webpage.
Antonio
no, I don't use PAWs, I use the norm-conserving pseudopotentials from the abinit webpage.
Antonio
- Thu Jan 10, 2019 12:50 am
- Forum: Response calculations
- Topic: parallel berryopt -1 crashing with more than one node
- Replies: 17
- Views: 15126
Re: parallel berryopt -1 crashing with more than one node
Dear Joe, thanks for your answer. I have an update on this. I recompiled abinit with the gnu compilers on the salomon machine I mentioned in my first post and now the calculation of the ab.in file that I attached before ends correctly. So, it looks like that the issue is related to the kind of compi...
- Thu Dec 06, 2018 10:19 am
- Forum: Response calculations
- Topic: parallel berryopt -1 crashing with more than one node
- Replies: 17
- Views: 15126
Re: parallel berryopt -1 crashing with more than one node
Dear Eric, thanks for your quick answer. The number of kpoints is that in the attached berry.in file ngkpt 9 9 9 When I run this job on a single node, it terminates cleanly. I then used the converged WFK and DEN files to restart a calculation on 2 nodes where I optimize the same structure with non-n...
- Wed Dec 05, 2018 5:02 pm
- Forum: Response calculations
- Topic: parallel berryopt -1 crashing with more than one node
- Replies: 17
- Views: 15126
parallel berryopt -1 crashing with more than one node
Dear all, I compiled abinit 8.10.1 on the salomon and anselm clusters using intel 17.0 compilers, libxc 3.0.0 and the following config parameters (config and make logs attached): ./configure --prefix=/home/acamm/bin/abinit-8.10.1 \ --enable-mpi --enable-mpi-io --enable-optim \ --with-dft-flavor=libx...
- Wed Jun 13, 2018 10:25 am
- Forum: Response calculations
- Topic: Electron-Phonon gkk ascii file [SOLVED]
- Replies: 4
- Views: 7683
Re: Electron-Phonon gkk ascii file [SOLVED]
Hi Matthieu,
thanks a lot for the answer, everything is clear now.
All the best
Antonio
thanks a lot for the answer, everything is clear now.
All the best
Antonio
- Mon Jun 11, 2018 11:53 am
- Forum: Response calculations
- Topic: Electron-Phonon gkk ascii file [SOLVED]
- Replies: 4
- Views: 7683
Re: Electron-Phonon gkk ascii file [SOLVED]
Dear Matthieu, thanks a lot for the answer, it was helpful. What are the physical units of the gkk elements written by abinit? Also, please, could you give me the published reference where I can find the complete definition of the gkk in the same formulation as used in abinit? I'd like to be aware o...
- Tue May 01, 2018 6:52 pm
- Forum: Jobs and Other Announcements
- Topic: EMRS fall 2018 Symposium I
- Replies: 0
- Views: 8678
EMRS fall 2018 Symposium I
We would like to encourage abstract contribution for talks at the EMRS Fall 2018 Meeting - Symposium I: "Atomic-scale design protocols towards energy, electronic, catalysis and sensing applications". The Symposium will take place in Warsaw, Poland, from September 17 to September 20. The Sy...
- Tue Apr 24, 2018 5:01 pm
- Forum: Response calculations
- Topic: Electron-Phonon gkk ascii file [SOLVED]
- Replies: 4
- Views: 7683
Electron-Phonon gkk ascii file [SOLVED]
Dear all, I am using abinit 8.6.3 and I am following the tutorial on electron-phonon coupling step by step. I obtained the gkk files and merged them using the mrggkk utility as described in the tutorial. I need to know how to read the ascii version of the teph_3o_GKK.bin (from mrggkk output), becaus...
- Mon Oct 16, 2017 4:09 pm
- Forum: Jobs and Other Announcements
- Topic: PhD position in Applied Physics
- Replies: 0
- Views: 9236
PhD position in Applied Physics
Fully funded PhD position (3 years) in Applied Physics immediately available at Czech Technical University in Prague "Ab initio design and application of 2D layered materials based on transition metal dichalcogenides (TMDs)" 2300-2700 EUR/month, full health insurance, retirement plan, fami...
- Mon Oct 09, 2017 3:16 pm
- Forum: Ground state
- Topic: SCAN+rvv10 functional
- Replies: 3
- Views: 3845
Re: SCAN+rvv10 functional
I saw that SCAN+rvv10 has been implemented in libxc 4.0.0 ( MGGA_C_SCAN_RVV10: SCAN+rVV10 correlation ) m if abinit is compiled with such version of libxc, what ixc value should be specified to use it? It is not in the list of allowed values, maybe it has not been documented yet. Thanks in advance f...
- Thu May 11, 2017 2:23 pm
- Forum: Ground state
- Topic: SCAN+rvv10 functional
- Replies: 3
- Views: 3845
Re: SCAN+rvv10 functional
Thanks a lot for the answer. In case developers are planning to implement rvv10, I am available to help with any test.
Best
Antonio
Best
Antonio
- Fri May 05, 2017 11:29 am
- Forum: Ground state
- Topic: SCAN+rvv10 functional
- Replies: 3
- Views: 3845
SCAN+rvv10 functional
Dear all, I am wondering if it is possible to use the SCAN+rvv10 functional (m) in abinit. I didn't find any option for it, but maybe it is already implemented in the development version and it can be used by a proper choice of multiple parameters. Thanks a lot in advance for your reply. Best Antonio
- Tue Mar 10, 2015 10:13 am
- Forum: Response calculations
- Topic: Full relaxation under non-null electric field
- Replies: 0
- Views: 2293
Full relaxation under non-null electric field
Dear all, I am trying to fully optimize a simple tetragonal cell with a non-null electric field applied. I started using a small field; I see that, despite ionmov=2, only the cell parameters are changed, because of the tolerance on the forces. Then I incrementally increased the field restarting from...
- Tue Nov 04, 2014 6:19 pm
- Forum: Ground state
- Topic: Cell+ion relaxation with electric displacement
- Replies: 1
- Views: 2632
Re: Cell+ion relaxation with electric displacement
Update: in serial mode I get the following error message: Summary of the results Electronic Berry phase -5.641126032E-01 Ionic phase 0.000000000E+00 Total phase -5.641126032E-01 Remapping in [-1,1] -5.641126032E-01 P(1) Shifted polarization branch to minimize red_efield k from -5.641126032E-01 by -1...
- Tue Nov 04, 2014 6:16 pm
- Forum: Ground state
- Topic: Cell+ion relaxation with electric displacement
- Replies: 1
- Views: 2632
Cell+ion relaxation with electric displacement
Dear all, I'm trying to do a full (cell shape+atom position) relaxation with a non-null electric displacement with abinit version 7.6.4 . This is the setting I'm using: ixc 3 #Parameters of the SCF cycles #**************************** iscf 4 nstep 2000 toldfe 1.0d-10 #Plane wave basis and k-point gr...