ABINIT Discussion Forums

I am trying to compile version 6.12.3 on a Blue Gene/P machine and am running into an issue with m_xmpi.F90

I have updated the xlf.cfg file so that it does not give errors with comments in the header files. I made it past the configure step, and have attached the bgp-fn.ac file that contains all values used (only uncommented lines shown).

enable_optim="yes"
CPP="/usr/bin/cpp"
CC="/bgsys/drivers/ppcfloor/comm/fast/bin/mpixlc_r"
CFLAGS="-qlanglvl=extc99 -O3 -qspill=64000 -qarch=450d -qtune=450 -qcache=auto -qstrict "
CXX="/bgsys/drivers/ppcfloor/comm/fast/bin/mpixlcxx_r"
FC="/bgsys/drivers/ppcfloor/comm/fast/bin/mpixlf90_r -F$HOME/xlf.cfg"
FCFLAGS="-O3 -qstrict -qarch=450d -qtune=450 -qmaxmem=-1 -qcache=auto "
enable_fc_wrapper="no"
AR="ar"
enable_mpi="yes"
enable_mpi_io="yes"
MPI_RUNNER="/bgsys/drivers/ppcfloor/bin/mpirun"
with_trio_flavor="none"
with_netcdf_incs="-I/usr/local/netcdf/include"
with_netcdf_libs="-L/usr/local/netcdf/lib -lnetcdf"
with_fft_flavor="fftw3"
with_fft_incs="-I$HOME/BIN/fftw-3.3.2_d/include/"
with_fft_libs="-L$HOME/BIN/fftw-3.3.2_d/lib -lfftw3"
with_linalg_flavor="essl"
with_linalg_incs="-I/opt/ibmmath/essl/4.4/include"
with_linalg_libs="-L/opt/apps/lapack/3.4.1/lib/ -L/opt/ibmmath/essl/4.4/lib -llapack -lblas -lesslsmpbg"
with_math_incs="-I/opt/ibmcmp/xlmass/bg/4.4/include"
with_math_libs="-L/opt/ibmcmp/xlmass/bg/4.4/bglib -lmass"
with_dft_flavor="none"
enable_clib="yes"
enable_gw_dpc="yes"
enable_maintainer_checks="no"
enable_test_timeout="yes"
with_fc_vendor="ibm"
with_fc_version="12.1"
enable_gui_build="no"


When I issue make, I get the following error. It appears that earlier version has worked on BGP, so perhaps something changed in 6.12.3. I haven't been able to find any discussion about this error in the forums


make[3]: Leaving directory `/home/p/abinit-6.12.3/src/11_qespresso_ext'
Making all in 12_hide_mpi
make[3]: Entering directory `/home/p/abinit-6.12.3/src/12_hide_mpi'
/bgsys/drivers/ppcfloor/comm/fast/bin/mpixlf2003_r -F/home/p/xlf.cfg -DHAVE_CONFIG_H -I. -I../.. -I../../src/incs -I../../src/incs -I/home/p/abinit-6.12.3/fallbacks/exports/include -WF,-DHAVE_CONFIG_H -qsuffix=cpp=F90:f=f90 -qfree=f90 -qmoddir=/home/p/abinit-6.12.3/src/mods -I/home/p/abinit-6.12.3/src/mods -O3 -qstrict -qarch=450d -qtune=450 -qmaxmem=-1 -qcache=auto -c -o m_xmpi.o m_xmpi.F90
"/tmp/F831084AhVh8X", line 11408.29: 1513-061 (S) Actual argument attributes do not match those specified by an accessible explicit interface.
"/tmp/F831084AhVh8X", line 11487.29: 1513-061 (S) Actual argument attributes do not match those specified by an accessible explicit interface.
"/tmp/F831084AhVh8X", line 11489.29: 1513-061 (S) Actual argument attributes do not match those specified by an accessible explicit interface.
"/tmp/F831084AhVh8X", line 11569.29: 1513-061 (S) Actual argument attributes do not match those specified by an accessible explicit interface.
"/tmp/F831084AhVh8X", line 11571.29: 1513-061 (S) Actual argument attributes do not match those specified by an accessible explicit interface.
"/tmp/F831084AhVh8X", line 11573.29: 1513-061 (S) Actual argument attributes do not match those specified by an accessible explicit interface.
"/tmp/F831084AhVh8X", 1520-031 (W) Option DLINES is ignored within Fortran 90 free form and IBM free form.
** m_xmpi === End of Compilation 1 ===
1501-511 Compilation failed for file m_xmpi.F90.
make[3]: *** [m_xmpi.o] Error 1
make[3]: Leaving directory `/home/p/abinit-6.12.3/src/12_hide_mpi'
make[2]: *** [all-recursive] Error 1
make[2]: Leaving directory `/home/p/abinit-6.12.3/src'
make[1]: *** [all-recursive] Error 1
make[1]: Leaving directory `/home/p/abinit-6.12.3'
make: *** [all] Error 2


I changed options in .ac file, so I could see the preprocessed files. The error messages persist

"m_xmpi_cpp.f90", line 10572.29: 1513-061 (S) Actual argument attributes do not match those specified by an accessible explicit interface.
"m_xmpi_cpp.f90", line 10612.29: 1513-061 (S) Actual argument attributes do not match those specified by an accessible explicit interface.
"m_xmpi_cpp.f90", line 10614.29: 1513-061 (S) Actual argument attributes do not match those specified by an accessible explicit interface.
"m_xmpi_cpp.f90", line 10657.29: 1513-061 (S) Actual argument attributes do not match those specified by an accessible explicit interface.
"m_xmpi_cpp.f90", line 10659.29: 1513-061 (S) Actual argument attributes do not match those specified by an accessible explicit interface.
"m_xmpi_cpp.f90", line 10661.29: 1513-061 (S) Actual argument attributes do not match those specified by an accessible explicit interface.


Here are the corresponding lines in m_xmpi_cpp.f90 file
call MPI_Type_hvector(ny,1,stride_x,column_type,new_type,mpi_err)
call MPI_Type_hvector(ny,1,stride_x,column_type,plane_type,mpi_err)
call MPI_Type_hvector(nz,1,ldy*stride_x,plane_type,new_type,mpi_err)
call MPI_Type_hvector(ny,1,stride_x,column_type,plane_type,mpi_err)
call MPI_Type_hvector(nz,1,ldy*stride_x,plane_type,vol_type,mpi_err)
call MPI_Type_hvector(na,1,ldz*ldy*stride_x,vol_type,new_type,mpi_err)

So, it appears to be the second argument that is causing trouble.

I'm guessing I am missing a trivial flag somewhere... Any help would be greatly appreciated. thanks

Paul Whitford
Rice University

Hi,

This could be similar to the MPICH2 bug with the hvector type definition (although you're not using MPICH). Try setting:

with_mpi_level="1"

and reconfigure. Unlike the MPICH case you probably can't just patch your MPI libraries to fix the fundamental issue here so the with_mpi_level change might be a workaround. Search the forums for the hvector discussion to see how the problem is fixed in MPICH2 with a patch.

Kane

that worked. Thanks