Hi,
We have been trying to install Abinit 6.03 on a Blue Gene/P machine. One of our system administrators got the errors below when trying to compile the code. Please could you assist, what do we need to do.
Thanks so much,
Anton
##############################################################
Error: Symbol 'mpi_comm_null' at (1) has no IMPLICIT type
In file xallgather_mpi.F90:138
call MPI_ALLGATHER(xval,nelem,MPI_INTEGER,recvcounts,nelem,MPI_INTEGER,space
1
Error: Symbol 'mpi_integer' at (1) has no IMPLICIT type
In file xallgather_mpi.F90:136
if (spaceComm /= MPI_COMM_SELF .and. spaceComm /= MPI_COMM_NULL) then
1
Error: Symbol 'mpi_comm_self' at (1) has no IMPLICIT type
In file xallgather_mpi.F90:197
if (spaceComm /= MPI_COMM_SELF .and. spaceComm /= MPI_COMM_NULL) then
1
Error: Symbol 'mpi_comm_self' at (1) has no IMPLICIT type
In file xallgather_mpi.F90:197
if (spaceComm /= MPI_COMM_SELF .and. spaceComm /= MPI_COMM_NULL) then
1
Error: Symbol 'mpi_comm_null' at (1) has no IMPLICIT type
In file xallgather_mpi.F90:199
call MPI_ALLGATHER(xval,nelem,MPI_DOUBLE_PRECISION,recvcounts,nelem,MPI_DOUB
1
Error: Symbol 'mpi_double_precision' at (1) has no IMPLICIT type
In file xallgather_mpi.F90:258
if (spaceComm /= MPI_COMM_SELF .and. spaceComm /= MPI_COMM_NULL) then
1
Error: Symbol 'mpi_comm_null' at (1) has no IMPLICIT type
In file xallgather_mpi.F90:258
if (spaceComm /= MPI_COMM_SELF .and. spaceComm /= MPI_COMM_NULL) then
1
Error: Symbol 'mpi_comm_self' at (1) has no IMPLICIT type
In file xallgather_mpi.F90:260
call MPI_ALLGATHER(xval,nelem,MPI_DOUBLE_PRECISION,recvcounts,nelem,MPI_DOUB
1
Error: Symbol 'mpi_double_precision' at (1) has no IMPLICIT type
make[3]: *** [xallgather_mpi.o] Error 1
make[2]: *** [all-recursive] Error 1
make[1]: *** [all-recursive] Error 1
make: *** [all] Error 2
##############################################################################
Difficulty with Make for 6.03 on Blue Gene/P
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Please have a look at ~abinit/doc/config/build-config.ac in the source package for detailed and up-to-date information about the configuration of Abinit 8 builds.
For a video explanation on how to build Abinit 7.x for Linux, please go to: http://www.youtube.com/watch?v=DppLQ-KQA68.
IMPORTANT: when an answer solves your problem, please check the little green V-like button on its upper-right corner to accept it.
Please have a look at ~abinit/doc/config/build-config.ac in the source package for detailed and up-to-date information about the configuration of Abinit 8 builds.
For a video explanation on how to build Abinit 7.x for Linux, please go to: http://www.youtube.com/watch?v=DppLQ-KQA68.
IMPORTANT: when an answer solves your problem, please check the little green V-like button on its upper-right corner to accept it.
Re: Difficulty with Make for 6.03 on Blue Gene/P
The problem appears to have been resolved now, our sys admin has managed to install Abinit 6.03. Thanks for your time and interest.
Thanks,
Anton
Thanks,
Anton
Re: Difficulty with Make for 6.03 on Blue Gene/P
Hello,
good news. Could you provide the config.log, so other bluegene users can try the same configure options?
Cheers
Matthieu
good news. Could you provide the config.log, so other bluegene users can try the same configure options?
Cheers
Matthieu
Matthieu Verstraete
University of Liege, Belgium
University of Liege, Belgium
Re: Difficulty with Make for 6.03 on Blue Gene/P
aslopis wrote:The problem appears to have been resolved now, our sys admin has managed to install Abinit 6.03. Thanks for your time and interest.
Thanks,
Anton
I had the same problems. could you tell me how to solve the problems.
Thank you very much
Zj Ma
Problem Running 6.03 on Blue Gene/P
Hi All,
I'm using version 6.03 and trying to run on a BGP. I have the following errors in my log file (below). Does anyone have an idea what's wrong. I've sought advice from our systems admin, and he's been waiting for help from someone he knows who could help. I know that the BGP architecture can make things more complicated. The compilation details from my config.log might help as well (see my other post today).
I would appreciate any ideas.
Thanks so much,
Anton
<Jun 02 17:25:15.502077> BE_MPI (ERROR): Job execution failed
<Jun 02 17:25:15.502162> BE_MPI (ERROR): Job 7233 is in state ERROR ('E')
<Jun 02 17:19:57.131892> FE_MPI (ERROR): Job execution failed (error code - 50)
<Jun 02 17:19:57.132085> FE_MPI (ERROR): - Job execution failed - job
switched to an error state
<Jun 02 17:25:15.672481> BE_MPI (ERROR): The error message in the job
record is as follows:
<Jun 02 17:25:15.672526> BE_MPI (ERROR): "Load failed on
172.16.100.6: Magic value in ELF header of executable file is invalid"
<Jun 02 17:19:57.446879> FE_MPI (ERROR): Failure list:
<Jun 02 17:19:57.446935> FE_MPI (ERROR): - 1. Job execution failed -
job switched to an error state (failure #50)
I'm using version 6.03 and trying to run on a BGP. I have the following errors in my log file (below). Does anyone have an idea what's wrong. I've sought advice from our systems admin, and he's been waiting for help from someone he knows who could help. I know that the BGP architecture can make things more complicated. The compilation details from my config.log might help as well (see my other post today).
I would appreciate any ideas.
Thanks so much,
Anton
<Jun 02 17:25:15.502077> BE_MPI (ERROR): Job execution failed
<Jun 02 17:25:15.502162> BE_MPI (ERROR): Job 7233 is in state ERROR ('E')
<Jun 02 17:19:57.131892> FE_MPI (ERROR): Job execution failed (error code - 50)
<Jun 02 17:19:57.132085> FE_MPI (ERROR): - Job execution failed - job
switched to an error state
<Jun 02 17:25:15.672481> BE_MPI (ERROR): The error message in the job
record is as follows:
<Jun 02 17:25:15.672526> BE_MPI (ERROR): "Load failed on
172.16.100.6: Magic value in ELF header of executable file is invalid"
<Jun 02 17:19:57.446879> FE_MPI (ERROR): Failure list:
<Jun 02 17:19:57.446935> FE_MPI (ERROR): - 1. Job execution failed -
job switched to an error state (failure #50)