ABINIT Discussion Forums

Hi,

We have been trying to install Abinit 6.03 on a Blue Gene/P machine. One of our system administrators got the errors below when trying to compile the code. Please could you assist, what do we need to do.

Thanks so much,
Anton

##############################################################
Error: Symbol 'mpi_comm_null' at (1) has no IMPLICIT type
In file xallgather_mpi.F90:138

call MPI_ALLGATHER(xval,nelem,MPI_INTEGER,recvcounts,nelem,MPI_INTEGER,space
1
Error: Symbol 'mpi_integer' at (1) has no IMPLICIT type
In file xallgather_mpi.F90:136

if (spaceComm /= MPI_COMM_SELF .and. spaceComm /= MPI_COMM_NULL) then
1
Error: Symbol 'mpi_comm_self' at (1) has no IMPLICIT type
In file xallgather_mpi.F90:197

if (spaceComm /= MPI_COMM_SELF .and. spaceComm /= MPI_COMM_NULL) then
1
Error: Symbol 'mpi_comm_self' at (1) has no IMPLICIT type
In file xallgather_mpi.F90:197

if (spaceComm /= MPI_COMM_SELF .and. spaceComm /= MPI_COMM_NULL) then
1
Error: Symbol 'mpi_comm_null' at (1) has no IMPLICIT type
In file xallgather_mpi.F90:199

call MPI_ALLGATHER(xval,nelem,MPI_DOUBLE_PRECISION,recvcounts,nelem,MPI_DOUB
1
Error: Symbol 'mpi_double_precision' at (1) has no IMPLICIT type
In file xallgather_mpi.F90:258

if (spaceComm /= MPI_COMM_SELF .and. spaceComm /= MPI_COMM_NULL) then
1
Error: Symbol 'mpi_comm_null' at (1) has no IMPLICIT type
In file xallgather_mpi.F90:258

if (spaceComm /= MPI_COMM_SELF .and. spaceComm /= MPI_COMM_NULL) then
1
Error: Symbol 'mpi_comm_self' at (1) has no IMPLICIT type
In file xallgather_mpi.F90:260

call MPI_ALLGATHER(xval,nelem,MPI_DOUBLE_PRECISION,recvcounts,nelem,MPI_DOUB
1
Error: Symbol 'mpi_double_precision' at (1) has no IMPLICIT type
make[3]: *** [xallgather_mpi.o] Error 1
make[2]: *** [all-recursive] Error 1
make[1]: *** [all-recursive] Error 1
make: *** [all] Error 2

##############################################################################

The problem appears to have been resolved now, our sys admin has managed to install Abinit 6.03. Thanks for your time and interest.

Thanks,
Anton

Hello,

good news. Could you provide the config.log, so other bluegene users can try the same configure options?

Cheers

Matthieu

aslopis wrote:The problem appears to have been resolved now, our sys admin has managed to install Abinit 6.03. Thanks for your time and interest.

Thanks,
Anton

I had the same problems. could you tell me how to solve the problems.
Thank you very much

Zj Ma

Hi All,

I'm using version 6.03 and trying to run on a BGP. I have the following errors in my log file (below). Does anyone have an idea what's wrong. I've sought advice from our systems admin, and he's been waiting for help from someone he knows who could help. I know that the BGP architecture can make things more complicated. The compilation details from my config.log might help as well (see my other post today).

I would appreciate any ideas.

Thanks so much,
Anton


<Jun 02 17:25:15.502077> BE_MPI (ERROR): Job execution failed
<Jun 02 17:25:15.502162> BE_MPI (ERROR): Job 7233 is in state ERROR ('E')
<Jun 02 17:19:57.131892> FE_MPI (ERROR): Job execution failed (error code - 50)
<Jun 02 17:19:57.132085> FE_MPI (ERROR): - Job execution failed - job
switched to an error state
<Jun 02 17:25:15.672481> BE_MPI (ERROR): The error message in the job
record is as follows:
<Jun 02 17:25:15.672526> BE_MPI (ERROR): "Load failed on
172.16.100.6: Magic value in ELF header of executable file is invalid"
<Jun 02 17:19:57.446879> FE_MPI (ERROR): Failure list:
<Jun 02 17:19:57.446935> FE_MPI (ERROR): - 1. Job execution failed -
job switched to an error state (failure #50)