Code: Select all
mv 0001-Fic-NetCDF-bug.log 0001-Fic-NetCDF-bug.patch
cd abinit-7.6.4
patch -p1 < ../0001-Fix-NetCDF-bug.patch
make clean && ./configure --with-trio-flavor="netcdf+etsf_io" && make
Bug in internal netcdf for mac [SOLVED]
Moderators: fgoudreault, mcote
Forum rules
Please have a look at ~abinit/doc/config/build-config.ac in the source package for detailed and up-to-date information about the configuration of Abinit 8 builds.
For a video explanation on how to build Abinit 7.x for Linux, please go to: http://www.youtube.com/watch?v=DppLQ-KQA68.
IMPORTANT: when an answer solves your problem, please check the little green V-like button on its upper-right corner to accept it.
Please have a look at ~abinit/doc/config/build-config.ac in the source package for detailed and up-to-date information about the configuration of Abinit 8 builds.
For a video explanation on how to build Abinit 7.x for Linux, please go to: http://www.youtube.com/watch?v=DppLQ-KQA68.
IMPORTANT: when an answer solves your problem, please check the little green V-like button on its upper-right corner to accept it.
Bug in internal netcdf for mac [SOLVED]
There is a small bug in netcdf that makes it not compile on Mac OS X 10.9 using the Xcode compiler. It requires adding a single line of code to netcdf. I haven't seen any other post about this bug so I don't know if it's been addressed before. Since the abinit build system tries to build netcdf, I attached a patch for abinit v7.6.4 (it's a patch within a patch!) that fixed it for me. The abinit build system will apply the netcdf patch automatically.
- Attachments
-
0001-Fix-NetCDF-bug.log- NetCDF patch
- (3.27 KiB) Downloaded 389 times
Re: Bug in internal netcdf for mac
Hi,
I use the ports
netcdf +gcc48 +gfortran
netcdf-fortran
mpich-gcc48
from MacPorts under MacOS X 10.8
and use
with_netcdf_incs="-I/opt/local/include"
with_netcdf_libs="-L/opt/local/lib -lnetcdf -lnetcdff"
in my ac file and
everything works… without patch...
my 5¢
jmb
I use the ports
netcdf +gcc48 +gfortran
netcdf-fortran
mpich-gcc48
from MacPorts under MacOS X 10.8
and use
with_netcdf_incs="-I/opt/local/include"
with_netcdf_libs="-L/opt/local/lib -lnetcdf -lnetcdff"
in my ac file and
everything works… without patch...
my 5¢
jmb
------
Jean-Michel Beuken
Computer Scientist
Jean-Michel Beuken
Computer Scientist
Re: Bug in internal netcdf for mac
I hope the patch will be useful for people who do not wish to use macports and useful for the build system maintainers in the next versions of abinit.