internal compiler error: Segmentation fault during make
Posted: Wed Jul 11, 2018 8:57 am
config.log- config log file
- (92.02 KiB) Downloaded 347 times
- config.log
- config log file
- (92.02 KiB) Downloaded 347 times
I am new user of abinit and compiling abinit-8.8.3 on a cluster. I prepared a hostname.ac file and run the configure in the build directory with .ac file as config file. After configuration with no error or warning, I issued make. In this step I am getting "../../../src/41_xc_lowlevel/drivexc.F90:894: internal compiler error: Segmentation fault" error.
I am giving the system information and configure details below:
OS : CentOS 6.7
uname -a
Linux 2.6.32-504.23.4.el6.x86_64 #1 SMP x86_64 x86_64 x86_64 GNU/Linux
ifort (icc) -V : Intel(R) 64, Version 13.0.1.117 Build 20121010
My hostname.ac file:
Code: Select all
FC="gfortran"
CC="gcc"
enable_mpi="yes"
enable_mpi_io="yes"
with_mpi_prefix="/opt/soft/share/openmpigcc"
with_tardir="/home/shiva/.abinit/tarballs"
with_trio_flavor="netcdf"
with_fft_flavor="fftw3"
with_fft_libs="-L/opt/soft/share/intel/composer_xe_2013.1.117/mkl/lib/intel64 -Wl,--start-group -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -Wl,--end-group"
with_linalg_flavor="mkl"
with_linalg_libs="-L/opt/soft/share/intel/composer_xe_2013.1.117/mkl/lib/intel64 -Wl,--start-group -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -Wl,--end-group"
with_dft_flavor="atompaw+bigdft+libxc+wannier90"
enable_gw_dpc="yes"
Code: Select all
==============================================================================
=== Final remarks ===
==============================================================================
Summary of important options:
* C compiler : gnu version 4.4
* Fortran compiler: gnu version 4.4
* architecture : intel xeon (64 bits)
* debugging : basic
* optimizations : standard
* OpenMP enabled : no (collapse: ignored)
* MPI enabled : yes
* MPI-IO enabled : yes
* GPU enabled : no (flavor: none)
* TRIO flavor = netcdf-fallback
* TIMER flavor = abinit (libs: ignored)
* LINALG flavor = mkl (libs: user-defined)
* ALGO flavor = none (libs: ignored)
* FFT flavor = fftw3 (libs: user-defined)
* MATH flavor = none (libs: ignored)
* DFT flavor = libxc-fallback+atompaw-fallback+bigdft-fallback+wannier90-fallback
I have tried configuring with icc and ifort(also with mpif90 and mpicc) in hostname.ac but abinit configure was automatically taking gcc and gfortran 4.4.
I have also tried basic abinit compilation with_dft_flavor="none and got the same error.
I have attached config.log.
Thank you
Shivaprasad
IIT Mandi,