Initialization of molecular dynamics run
Posted: Sat Jul 27, 2019 11:31 pm
This is more of a suggestion than a real problem in running molecular dynamics simulations with abinit. We found that with ionmov 12 (isokinetic) and 8 (Nose), abinit
uses mdtemp to set the temperature. We wanted to try a NVE calculation with ionmov 6 and were surprised that mdtemp did not set the temperature. We are able to
to control the temperature by initializing the atom velocities with a small program we wrote and adding that information to the input file with the "vel" key word.
In retrospect, this is totally logical, but it might be helpful to users to add a few sentences on the webpage describing the use of ionmov 6 (and related values of ionmov
such as 1 or 24). Thanks, Natalie
uses mdtemp to set the temperature. We wanted to try a NVE calculation with ionmov 6 and were surprised that mdtemp did not set the temperature. We are able to
to control the temperature by initializing the atom velocities with a small program we wrote and adding that information to the input file with the "vel" key word.
In retrospect, this is totally logical, but it might be helpful to users to add a few sentences on the webpage describing the use of ionmov 6 (and related values of ionmov
such as 1 or 24). Thanks, Natalie