ABINIT Discussion Forums

Posted: **Thu May 15, 2014 8:16 am**

There is a small bug in netcdf that makes it not compile on Mac OS X 10.9 using the Xcode compiler. It requires adding a single line of code to netcdf. I haven't seen any other post about this bug so I don't know if it's been addressed before. Since the abinit build system tries to build netcdf, I attached a patch for abinit v7.6.4 (it's a patch within a patch!) that fixed it for me. The abinit build system will apply the netcdf patch automatically.

Code: Select all

mv 0001-Fic-NetCDF-bug.log 0001-Fic-NetCDF-bug.patch
cd abinit-7.6.4
patch -p1 < ../0001-Fix-NetCDF-bug.patch
make clean && ./configure --with-trio-flavor="netcdf+etsf_io" && make

Posted: **Thu May 22, 2014 10:51 pm**

Hi,

I use the ports

netcdf +gcc48 +gfortran
netcdf-fortran
mpich-gcc48

from MacPorts under MacOS X 10.8

and use

with_netcdf_incs="-I/opt/local/include"
with_netcdf_libs="-L/opt/local/lib -lnetcdf -lnetcdff"

in my ac file and

everything works… without patch...

my 5¢

jmb

Posted: **Sat Jun 14, 2014 3:11 am**

I hope the patch will be useful for people who do not wish to use macports and useful for the build system maintainers in the next versions of abinit.

ABINIT Discussion Forums

Bug in internal netcdf for mac

Bug in internal netcdf for mac [SOLVED]

Re: Bug in internal netcdf for mac

Re: Bug in internal netcdf for mac