abinit-6.12.1. Compiler error at ATOMPAW - ABINIT Discussion Forums

abinit-6.12.1. Compiler error at ATOMPAW

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11 posts • Page 1 of 1

temok: Posts: 39; Joined: Tue Jun 08, 2010 1:44 am

abinit-6.12.1. Compiler error at ATOMPAW

Quote

Post by temok » Wed Mar 07, 2012 1:40 am

Dear ABINIT users and Developers,

Over the last months I was able to successfully install ABINIT versions 6.2.3 and 6.6.2 using

OS: Scientific Linux 2.6.18-274.el5 #1 SMP Thu Jul 21 12:13:11 EDT 2011 x86_64 x86_64 x86_64 GNU/Linux

MPI: mpirun (Open MPI) 1.4.2

MPI F90: opt/openmpi-1.4.2/bin/mpif90 --version
ifort (IFORT) 10.0 20070426
Copyright (C) 1985-2007 Intel Corporation. All rights reserved.

with the following configuration options:

cd ~/ABINIT/build1_parallel/
step1: ../configure --enable-mpi=yes --with-mpi-prefix=/home/temok/opt/openmpi-1.4.2 >& build1-configure.log
step2: make multi multi_nprocs=40 >& build2-make.log

Problem: Now I am trying to install abinit abinit-6.12.1. The configuration process runs OK, but the make process has a compilation error at the atompaw stage (the full output of make is in the attached files, parts 1 to 3. Needed to split due to max size of attachments is 256KB). The output of configure is 'pasted' at the very end of this message, because the max number of attachments is 3; Sorry for this.

Any suggestions?
Best regards,
Temok

The next lines contain the error messages of make. The full output of make is contained in the attached files (parts 1 to 3).

Code: Select all

fortcom: Severe: **Internal compiler error: internal abort** Please report this error along with the circumstances in which it occurred in a Software Problem Report.  Note: File and line given may not be explicit cause of this error.

ifort: error #10014: problem during multi-file optimization compilation (code 3)
make[5]: *** [atompaw] Error 3
make[5]: Leaving directory `/home/temok/opt/abinit-6.12.1/build-parallel-openMPI/fallbacks/sources/atompaw-3.0.1.3/src'
make[4]: *** [all-recursive] Error 1
make[4]: Leaving directory `/home/temok/opt/abinit-6.12.1/build-parallel-openMPI/fallbacks/sources/atompaw-3.0.1.3'
make[3]: *** [all] Error 2
make[3]: Leaving directory `/home/temok/opt/abinit-6.12.1/build-parallel-openMPI/fallbacks/sources/atompaw-3.0.1.3'
make[2]: *** [stamps/atompaw-build-stamp] Error 2
make[2]: Leaving directory `/home/temok/opt/abinit-6.12.1/build-parallel-openMPI/fallbacks'
make[1]: [all-local] Error 2 (ignored)
Checking build of atompaw fallback
test -e stamps/atompaw-install-stamp
make[1]: *** [all-local] Error 1
make[1]: Leaving directory `/home/temok/opt/abinit-6.12.1/build-parallel-openMPI/fallbacks'
make: *** [multi] Error 2

OUTPUT of the CONFIGURATION Process

Code: Select all

 ==============================================================================
 === Overall startup                                                        ===
 ==============================================================================

checking build system type... x86_64-unknown-linux-gnu
checking host system type... x86_64-unknown-linux-gnu
checking target system type... x86_64-unknown-linux-gnu
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /bin/mkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking whether make sets $(MAKE)... (cached) yes
checking whether ln -s works... yes
checking for a sed that does not truncate output... /bin/sed
checking for gawk... (cached) gawk
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
configure: not loading options (no config file available)

 ==============================================================================
 === Build-system information                                               ===
 ==============================================================================

configure: ABINIT version 6.12.1
configure: M4 010416 - Autoconf 026800 - Automake 011100 - Libtool 020204
configure: reporting user interface changes:
configure:  * new option --enable-gui is available
configure:  * new option --enable-gw-openmp is available
configure:  * new option --with-algo-flavor is available
configure:  * new option --with-algo-incs is available
configure:  * new option --with-algo-libs is available
configure:  * --with-fallbacks-tardir removed

 ==============================================================================
 === Option consistency checking                                            ===
 ==============================================================================

configure: checking consistency of library-related options
configure:  |---> all OK
configure: 
configure: checking consistency of experimental options
configure:  |---> all OK
configure: 
configure:  |---> all OK
configure: 
configure: parsing command-line options

 ==============================================================================
 === Multicore architecture startup                                         ===
 ==============================================================================

configure: Initializing MPI support
configure: looking for MPI in /home/temok/opt/openmpi-1.4.2
checking for a MPI C compiler... /home/temok/opt/openmpi-1.4.2/bin/mpicc
checking for a MPI C++ compiler... /home/temok/opt/openmpi-1.4.2/bin/mpicxx
checking for a MPI Fortran compiler... /home/temok/opt/openmpi-1.4.2/bin/mpif90
checking for a MPI runner... /home/temok/opt/openmpi-1.4.2/bin/mpirun
configure: GPU support disabled from command-line

 ==============================================================================
 === Utilities                                                              ===
 ==============================================================================

checking for sh... /bin/sh
checking for mv... /bin/mv
checking for perl... /usr/bin/perl
checking for rm... /bin/rm
checking for patch... patch
checking for tar... tar

 ==============================================================================
 === C support                                                              ===
 ==============================================================================

checking for gcc... /home/temok/opt/openmpi-1.4.2/bin/mpicc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether /home/temok/opt/openmpi-1.4.2/bin/mpicc accepts -g... yes
checking for /home/temok/opt/openmpi-1.4.2/bin/mpicc option to accept ISO C89... none needed
checking for style of include used by make... GNU
checking dependency style of /home/temok/opt/openmpi-1.4.2/bin/mpicc... gcc3
checking how to run the C preprocessor... /home/temok/opt/openmpi-1.4.2/bin/mpicc -E
checking which type of compiler we have... gnu 4.1
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking whether byte ordering is bigendian... no

 ==============================================================================
 === C++ support                                                            ===
 ==============================================================================

checking whether we are using the GNU C++ compiler... yes
checking whether /home/temok/opt/openmpi-1.4.2/bin/mpicxx accepts -g... yes
checking dependency style of /home/temok/opt/openmpi-1.4.2/bin/mpicxx... gcc3
checking which type of C++ compiler we have... gnu 4.1

 ==============================================================================
 === Fortran support                                                        ===
 ==============================================================================

checking whether we are using the GNU Fortran compiler... no
checking whether /home/temok/opt/openmpi-1.4.2/bin/mpif90 accepts -g... yes
checking which type of Fortran compiler we have... intel 10.0
checking fortran 90 modules extension... mod
checking for Fortran flag to compile .F90 files... none
configure: determining Fortran module case
checking whether Fortran modules are upper-case... no
checking how to get verbose linking output from /home/temok/opt/openmpi-1.4.2/bin/mpif90... -v
checking for Fortran libraries of /home/temok/opt/openmpi-1.4.2/bin/mpif90...  -L/home/temok/opt/openmpi-1.4.2/lib -lmpi_f90 -lmpi_f77 -lmpi -lopen-rte -lopen-pal -ldl -lnsl -lutil -L/usr -limf -lm -L/opt/intel/mkl/9.1.023/lib/em64t -L/opt/intel/fce/10.0.023/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.1.2/ -L/usr/lib64 -lifport -lifcoremt -lsvml -lipgo -lirc -lpthread -lirc_s
checking for dummy main to link with Fortran libraries... none
checking for Fortran name-mangling scheme... lower case, underscore, no extra underscore

 ==============================================================================
 === Python support                                                         ===
 ==============================================================================

checking for python... python
checking for Python CPPFLAGS... -I/usr/include/python2.4 -I/usr/lib64/python2.4/site-packages/numpy/core/include
checking for bzr... bzr
checking for Python NumPy headers... found

 ==============================================================================
 === Libraries and linking                                                  ===
 ==============================================================================

checking for ar... ar
checking for ranlib... ranlib

 ==============================================================================
 === Hints                                                                  ===
 ==============================================================================

checking for cpp... cpp
checking for a true C preprocessor... cpp
checking which cpp hints to apply... default/default/default
checking which cc hints to apply... gnu/default/default
checking which xpp hints to apply... none/none/none
checking which cxx hints to apply... gnu/default/default
checking which fpp hints to apply... default/default/default
checking which fc hints to apply... intel/10.0/default
checking which ar hints to apply... none/none/none
checking which Fortran preprocessor to use... 
checking which Fortran preprocessor flags to apply... 
checking whether to wrap Fortran compiler calls... no

 ==============================================================================
 === Debugging                                                              ===
 ==============================================================================

checking debugging status... enabled (profile mode: basic)
configure: setting C debug flags to '-g'
configure: setting C++ debug flags to '-g'
configure: setting Fortran debug flags to '-g'
checking whether to activate debug mode in source files... no
checking which cc debug flags to apply... gnu/default/default
checking which cxx debug flags to apply... none/none/none
checking which fc debug flags to apply... intel/10.0/default
checking whether to activate design-by-contract debugging... no

 ==============================================================================
 === Optimizations                                                          ===
 ==============================================================================

checking optimization status... enabled (profile mode: standard)
checking which cc optimizations to apply... gnu/4.1/default
checking which cxx optimizations to apply... gnu/4.1/default
checking which fc optimizations to apply... intel/10.0/amd_opteron
checking whether to apply per-directory optimizations... yes

 ==============================================================================
 === 64-bit support                                                         ===
 ==============================================================================

checking for a 64-bit architecture... yes
checking whether to use 64-bit flags... no
checking for user-defined 64-bit flags... 

 ==============================================================================
 === Build flags                                                            ===
 ==============================================================================

configure: static builds may be performed

 ==============================================================================
 === Advanced compiler features                                             ===
 ==============================================================================

checking stddef.h usability... yes
checking stddef.h presence... yes
checking for stddef.h... yes
checking stdarg.h usability... yes
checking stdarg.h presence... yes
checking for stdarg.h... yes
checking stdio.h usability... yes
checking stdio.h presence... yes
checking for stdio.h... yes
checking math.h usability... yes
checking math.h presence... yes
checking for math.h... yes
checking termios.h usability... yes
checking termios.h presence... yes
checking for termios.h... yes
checking errno.h usability... yes
checking errno.h presence... yes
checking for errno.h... yes
checking malloc.h usability... yes
checking malloc.h presence... yes
checking for malloc.h... yes
checking sys/malloc.h usability... no
checking sys/malloc.h presence... no
checking for sys/malloc.h... no
checking mcheck.h usability... yes
checking mcheck.h presence... yes
checking for mcheck.h... yes
checking sys/time.h usability... yes
checking sys/time.h presence... yes
checking for sys/time.h... yes
checking sys/resource.h usability... yes
checking sys/resource.h presence... yes
checking for sys/resource.h... yes
checking for abort... yes
checking for mallinfo... yes
checking size of char... 1
checking size of short... 2
checking size of int... 4
checking size of long... 8
checking size of long long... 8
checking size of unsigned int... 4
checking size of unsigned long... 8
checking size of unsigned long long... 8
checking size of float... 4
checking size of double... 8
checking size of long double... 16
checking size of size_t... 8
checking size of ptrdiff_t... 8
checking for an ANSI C-conforming const... yes
checking for size_t... yes
checking whether the Fortran compiler supports allocatable arrays in datatypes... yes
checking whether the Fortran compiler provides the iso_c_binding module... yes
checking whether the Fortran compiler accepts exit()... yes
checking whether the Fortran compiler accepts flush()... yes
checking whether the Fortran compiler accepts flush_()... no
checking whether the Fortran compiler accepts gamma()... no
checking whether the Fortran compiler accepts getenv()... yes
checking whether the Fortran compiler accepts getpid()... yes
checking whether the Fortran compiler accepts the null() intrinsic... yes
checking whether the Fortran compiler accepts quadruple integers... no
checking whether the Fortran compiler accepts long lines... yes
checking whether the Fortran compiler supports stream IO... no
checking whether the Fortran compiler accepts cpu_time()... yes
checking whether the Fortran compiler accepts etime()... yes
checking whether to use C clock for timings... no

 ==============================================================================
 === Multicore architecture support                                         ===
 ==============================================================================

checking whether the C compiler supports MPI... yes
checking whether the C++ compiler supports MPI... yes
checking whether the Fortran Compiler supports MPI... yes
checking whether MPI is usable... yes
configure: enabling MPI I/O support
checking whether to build MPI code... yes
checking whether to build MPI I/O code... yes
checking whether to build MPI time tracing code... no
checking which level of MPI is supported by the Fortran compiler... 2
checking whether the MPI library supports MPI_CREATE_TYPE_STRUCT... yes
checking whether to activate GPU support... no

 ==============================================================================
 === Connectors / Fallbacks                                                 ===
 ==============================================================================

checking for the requested transferable I/O support... netcdf+etsf_io
checking whether to select a fallback for netcdf... no
checking netcdf.h usability... no
checking netcdf.h presence... no
checking for netcdf.h... no
checking for library containing nc_open... no
checking for Fortran module includes... unknown
configure: WARNING: falling back to internal netcdf version
checking whether to select a fallback for etsf_io... no
configure: WARNING: ETSF_IO requires missing NetCDF support
configure: WARNING: falling back to internal etsf_io version
checking for the actual transferable I/O support... netcdf-fallback+etsf_io-fallback
checking for the requested timer support... abinit
checking time.h usability... yes
checking time.h presence... yes
checking for time.h... yes
checking for clock_gettime in -lrt... yes
checking for clock_gettime... no
checking for the actual timer support... abinit
checking for the requested linear algebra support... netlib
checking whether to select a fallback for linear algebra... no
checking for library containing zgemm... no
checking for library containing zhpev... no
checking whether we have a serial linear algebra support... no
configure: WARNING: falling back to internal linear algebra libraries
checking whether we have a MPI linear algebra support... no
checking whether we have a GPU linear algebra support... no
checking for the actual linear algebra support... netlib-fallback
checking for the requested algorithmic support... none
checking for the actual algorithmic support... none
checking for the requested math support... none
checking for the actual math support... none
checking for the requested FFT support... none
checking for the actual FFT support... none
checking for the requested DFT support... atompaw+bigdft+libxc+wannier90
checking whether to select a fallback for libxc... no
checking xc.h usability... no
checking xc.h presence... no
checking for xc.h... no
checking xc_funcs.h usability... no
checking xc_funcs.h presence... no
checking for xc_funcs.h... no
checking for library containing xc_func_init... no
checking for Fortran module includes... unknown
configure: WARNING: falling back to internal libxc version
checking whether to select a fallback for atompaw... no
configure: WARNING: AtomPAW requires missing linear algebra support
configure: WARNING: AtomPAW requires missing LibXC support
configure: WARNING: falling back to internal atompaw version
checking whether to select a fallback for bigdft... no
configure: WARNING: BigDFT requires missing linear algebra support
configure: WARNING: BigDFT requires missing LibXC support
configure: WARNING: falling back to internal bigdft version
checking whether to select a fallback for wannier90... no
configure: WARNING: wannier90 requires missing linear algebra support
configure: WARNING: falling back to internal wannier90 version
checking for the actual DFT support... libxc-fallback+atompaw-fallback+bigdft-fallback+wannier90-fallback
configure: fallbacks to enable => atompaw bigdft etsf_io libxc linalg netcdf wannier90
checking whether to build atompaw... yes
checking whether to build bigdft... yes
checking whether to build etsf_io... yes
checking whether to build fox... no
checking whether to build libxc... yes
checking whether to build linalg... yes
checking whether to build netcdf... yes
checking whether to build wannier90... yes
configure: using tarball repository /home/temok/.abinit/tarballs
configure: copying linear algebra tarball to tarball repository

 ==============================================================================
 === Experimental developments and option triggers                          ===
 ==============================================================================

checking whether to accelerate 'make check'... no
checking whether to reduce 'make check' for packaging... no
checking whether to activate maintainer checks... no
configure: setting triggers associated to command-line options
checking whether to activate support for bindings (EXPERIMENTAL)... no
checking whether to activate Bethe-Salpeter unpacking (EXPERIMENTAL)... no
checking whether to enable the Abinit C library (EXPERIMENTAL)... no
checking whether to activate build of exported libraries (EXPERIMENTAL)... no
checking whether to activate the use of cut-offs for GW calculations (EXPERIMENTAL)... no
checking whether to activate double-precision GW calculations (EXPERIMENTAL)... no
checking whether to activate OpenMP-assisted GW calculations (EXPERIMENTAL)... no
checking whether to activate optimal GW calculations (EXPERIMENTAL)... no
checking whether to activate wrapped GW calculations (EXPERIMENTAL)... no
checking whether to enable build of macroave (EXPERIMENTAL)... yes
configure: triggering the 'DO_BUILD_01_MACROAVNEW_EXT' conditional
configure: triggering the 'DO_BUILD_MACROAVE' conditional
configure: defining the 'USE_MACROAVE' preprocessing macro
checking whether to activate support for Symmetric Multi-Processing (EXPERIMENTAL)... no
checking whether to tell Abinit to read file lists from standard input... yes
checking whether to activate workaround for bugged ZDOTC and ZDOTU... no

 ==============================================================================
 === Subsystems                                                             ===
 ==============================================================================

configure: the Abinit Documentation will never be built
configure: the Abinit FALLBACKS may be built when necessary
configure: the Abinit GUI will never be built
configure: the Abinit Documentation may be built upon request

 ==============================================================================
 === Output                                                                 ===
 ==============================================================================

configure: creating ./config.status
config.status: creating doc/Makefile
config.status: creating config.dump
config.status: creating config.pc
config.status: creating config.sh
config.status: creating config/wrappers/wrap-fc
config.status: creating fallbacks/config.mk
config.status: creating src/incs/Makefile
config.status: creating src/mods/Makefile
config.status: creating src/16_hideleave/m_build_info.F90
config.status: creating tests/config.sh
config.status: creating tests/tests.env
config.status: creating tests/tests-install.env
config.status: creating Makefile
config.status: creating src/Makefile
config.status: creating src/01_gsl_ext/Makefile
config.status: creating src/01_interfaces_ext/Makefile
config.status: creating src/01_linalg_ext/Makefile
config.status: creating src/01_macroavnew_ext/Makefile
config.status: creating src/02_clib/Makefile
config.status: creating src/10_defs/Makefile
config.status: creating src/11_qespresso_ext/Makefile
config.status: creating src/12_hide_mpi/Makefile
config.status: creating src/13_memory_mpi/Makefile
config.status: creating src/14_hidewrite/Makefile
config.status: creating src/15_gpu_toolbox/Makefile
config.status: creating src/16_hideleave/Makefile
config.status: creating src/18_timing/Makefile
config.status: creating src/27_toolbox_oop/Makefile
config.status: creating src/28_numeric_noabirule/Makefile
config.status: creating src/32_contract/Makefile
config.status: creating src/32_util/Makefile
config.status: creating src/42_geometry/Makefile
config.status: creating src/42_nlstrain/Makefile
config.status: creating src/42_parser/Makefile
config.status: creating src/42_wvl_wrappers/Makefile
config.status: creating src/43_abitypes_defs/Makefile
config.status: creating src/43_ptgroups/Makefile
config.status: creating src/44_geomoptim/Makefile
config.status: creating src/45_psp_parser/Makefile
config.status: creating src/47_xml/Makefile
config.status: creating src/49_gw_toolbox_oop/Makefile
config.status: creating src/51_manage_mpi/Makefile
config.status: creating src/52_fft_mpi_noabirule/Makefile
config.status: creating src/52_manage_cuda/Makefile
config.status: creating src/53_abiutil/Makefile
config.status: creating src/53_ffts/Makefile
config.status: creating src/53_spacepar/Makefile
config.status: creating src/56_mixing/Makefile
config.status: creating src/56_recipspace/Makefile
config.status: creating src/56_xc/Makefile
config.status: creating src/57_iovars/Makefile
config.status: creating src/59_io_mpi/Makefile
config.status: creating src/61_ionetcdf/Makefile
config.status: creating src/62_cg_noabirule/Makefile
config.status: creating src/62_iowfdenpot/Makefile
config.status: creating src/62_occeig/Makefile
config.status: creating src/62_poisson/Makefile
config.status: creating src/62_wvl_wfs/Makefile
config.status: creating src/63_bader/Makefile
config.status: creating src/64_atompaw/Makefile
config.status: creating src/65_nonlocal/Makefile
config.status: creating src/65_psp/Makefile
config.status: creating src/66_paw/Makefile
config.status: creating src/66_wfs/Makefile
config.status: creating src/67_common/Makefile
config.status: creating src/68_dmft/Makefile
config.status: creating src/68_recursion/Makefile
config.status: creating src/68_rsprc/Makefile
config.status: creating src/69_wfdesc/Makefile
config.status: creating src/70_gw/Makefile
config.status: creating src/71_bse/Makefile
config.status: creating src/72_response/Makefile
config.status: creating src/77_ddb/Makefile
config.status: creating src/77_lwf/Makefile
config.status: creating src/77_suscep/Makefile
config.status: creating src/79_seqpar_mpi/Makefile
config.status: creating src/83_cut3d/Makefile
config.status: creating src/93_rdm/Makefile
config.status: creating src/95_drive/Makefile
config.status: creating src/98_main/Makefile
config.status: creating src/libs/Makefile
config.status: creating tests/Nightly/Makefile
config.status: creating bindings/Makefile
config.status: creating bindings/parser/Makefile
config.status: creating config.h
config.status: executing depfiles commands
config.status: executing dump-optim commands
config.status: executing script-perms commands
config.status: executing long-lines commands
=== configuring in fallbacks (/home/temok/opt/abinit-6.12.1/build-parallel-openMPI/fallbacks)
configure: running /bin/sh ../../fallbacks/configure --disable-option-checking '--prefix=/usr/local'  '--enable-mpi=yes' '--with-mpi-prefix=/home/temok/opt/openmpi-1.4.2' '--enable-gui-build=yes' '--enable-atompaw=yes' '--enable-bigdft=yes' '--enable-etsf-io=yes' '--enable-fox=no' '--enable-libxc=yes' '--enable-linalg=yes' '--enable-netcdf=yes' '--enable-wannier90=yes' '--with-fc-vendor=intel' '--with-fc-version=10.0' '--with-tardir=/home/temok/.abinit/tarballs' --cache-file=/dev/null --srcdir=../../fallbacks
checking build system type... x86_64-unknown-linux-gnu
checking host system type... x86_64-unknown-linux-gnu
checking target system type... x86_64-unknown-linux-gnu
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /bin/mkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking whether make sets $(MAKE)... (cached) yes
checking whether ln -s works... yes
checking for a sed that does not truncate output... /bin/sed
checking for gawk... (cached) gawk
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
configure: setting Fortran compiler vendor to intel
configure: setting Fortran compiler version to 10.0
configure: setting tarball repository to /home/temok/.abinit/tarballs
configure: checking consistency of fallback options
checking for wget... wget
checking for curl... curl
configure: using tarball repository /home/temok/.abinit/tarballs
checking for patch... patch
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking for style of include used by make... GNU
checking dependency style of gcc... none
checking for gfortran... gfortran
checking whether we are using the GNU Fortran compiler... yes
checking whether gfortran accepts -g... yes
checking whether to enable the LINALG fallback... yes
checking for a source tarball of LINALG... yes
checking for md5sum... md5sum
configure: tarball MD5 check succeeded
configure: applying linear algebra tricks (vendor: intel, version: 10.0)
checking whether to enable the FOX fallback... no
checking whether to enable the NETCDF fallback... yes
checking for a source tarball of NETCDF... yes
configure: tarball MD5 check succeeded
configure: applying NetCDF tricks (vendor: intel, version: 10.0)
configure: CFGFLAGS_NETCDF =  --disable-cxx --disable-cxx-4 --disable-dap --disable-hdf4 --disable-netcdf4 --enable-fortran --enable-static --disable-shared
configure: CPPFLAGS_NETCDF =  -DNDEBUG -DpgiFortran
configure: FCFLAGS_NETCDF  =  -DNDEBUG -DpgiFortran -g -O2
checking whether to enable the ETSF_IO fallback... yes
checking for a source tarball of ETSF_IO... no
configure: downloading ETSF_IO - this may take a while
configure: tarball MD5 check succeeded
configure: applying ETSF_IO tricks (vendor: intel, version: 10.0)
configure: CFGFLAGS_ETSF_IO =  --with-netcdf-incs="$(lib_netcdf_incs)" --with-netcdf-libs="$(lib_netcdf_libs)" --with-moduledir="$(fallbacks_instdir)/include"
configure: FCFLAGS_ETSF_IO  = -g -O2
checking whether to enable the LIBXC fallback... yes
checking for a source tarball of LIBXC... no
configure: downloading LIBXC - this may take a while
configure: tarball MD5 check succeeded
configure: applying LIBXC tricks
configure: CFGFLAGS_LIBXC = --enable-fortran --enable-static --disable-shared
configure: CFLAGS_LIBXC   = -g -O2
checking whether to enable the ATOMPAW fallback... yes
checking for a source tarball of ATOMPAW... no
configure: downloading ATOMPAW - this may take a while
configure: tarball MD5 check succeeded
configure: applying AtomPAW tricks (vendor: intel, version: 10.0)
configure: CFGFLAGS_ATOMPAW =  --with-linalg-libs="$(lib_linalg_libs)" --enable-libxc --with-libxc-incs="$(lib_libxc_incs)" --with-libxc-libs="$(lib_libxc_libs)" --enable-static --disable-shared
checking whether to enable the BIGDFT fallback... yes
checking for a source tarball of BIGDFT... no
configure: downloading BIGDFT - this may take a while
configure: tarball MD5 check succeeded
configure: applying BigDFT tricks (vendor: intel, version: 10.0)
configure: CFGFLAGS_BIGDFT =  --disable-binaries --enable-libbigdft --enable-libpoissonsolver --disable-libxc --without-archives --with-moduledir="$(fallbacks_instdir)/include"
checking whether to enable the WANNIER90 fallback... yes
checking for a source tarball of WANNIER90... no
configure: downloading WANNIER90 - this may take a while
configure: tarball MD5 check succeeded
configure: applying Wannier90 tricks (vendor: intel, version: 10.0)
configure: LIBS_WANNIER90 = $(lib_linalg_libs) -L$(fallbacks_instdir)/lib -llapack -lblas -L$(fallbacks_instdir)/lib -letsf_io_low_level -letsf_io_utils -letsf_io  -lsvml
configure: creating ./config.status
config.status: creating Makefile
config.status: executing depfiles commands
=== configuring in tests (/home/temok/opt/abinit-6.12.1/build-parallel-openMPI/tests)
configure: running /bin/sh ../../tests/configure --disable-option-checking '--prefix=/usr/local'  '--enable-mpi=yes' '--with-mpi-prefix=/home/temok/opt/openmpi-1.4.2' '--enable-gui-build=yes' '--enable-atompaw=yes' '--enable-bigdft=yes' '--enable-etsf-io=yes' '--enable-fox=no' '--enable-libxc=yes' '--enable-linalg=yes' '--enable-netcdf=yes' '--enable-wannier90=yes' '--with-fc-vendor=intel' '--with-fc-version=10.0' '--with-tardir=/home/temok/.abinit/tarballs' --cache-file=/dev/null --srcdir=../../tests
checking build system type... x86_64-unknown-linux-gnu
checking host system type... x86_64-unknown-linux-gnu
checking target system type... x86_64-unknown-linux-gnu
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /bin/mkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking whether make sets $(MAKE)... (cached) yes
checking whether ln -s works... yes
checking for a sed that does not truncate output... /bin/sed
checking for gawk... (cached) gawk
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for perl... perl
checking for python... python
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking for style of include used by make... GNU
checking dependency style of gcc... none
checking timeout for automatic tests... none
checking whether to build test timeout code... no
configure: creating ./config.status
config.status: creating Makefile
config.status: executing depfiles commands

 ==============================================================================
 === Final remarks                                                          ===
 ==============================================================================


        +--------------------------------------------------------------+
        | Suboptimal linear algebra configuration                      |
        +--------------------------------------------------------------+
        | You have decided to use the Abinit version of linear         |
        | algebra libraries (BLAS, LAPACK), which is a random mix of   |
        | routines coming from official Netlib versions ranging from   |
        | 3.0 (released June 30, 1999) to 3.2 (released November 18,   |
        | 2008). They were downloaded from http://www.netlib.org/.     |
        |                                                              |
        | The current version of Netlib's libraries is 3.4.0 (released |
        | November 11, 2011). Since version 3.2, more than 60          |
        | significant bugs - including memory leaks - have been fixed, |
        | various performance improvements have been made available,   |
        | and routine interfaces have been refactored.                 |
        |                                                              |
        | Moreover, the Abinit version of the libraries rely on a      |
        | heavily modified build system and will be compiled with      |
        | build parameters optimized for Abinit, not for BLAS or       |
        | LAPACK. This might prove somewhat suboptimal or inadequate   |
        | on some computer architectures. Please note as well that the |
        | Abinit test suite does not provide specific tests for linear |
        | algebra.                                                     |
        |                                                              |
        | By using the libraries provided by Abinit, you thus accept to |
        | experience poor calculation performance, unlikely but possible |
        | random crashes without error messages, and possibly inaccurate |
        | results. However, if this is not what you intended           |
        | originally, you may instead select one of the various        |
        | optimized linear algebra implementations supported by        |
        | Abinit.                                                      |
        |                                                              |
        | For production-grade calculations, you will find detailed    |
        | documentation on how to configure Abinit for optimized       |
        | linear algebra libraries in the "Linear algebra              |
        | connector" section of Abinit's config file template:         |
        | ~abinit/doc/config/build-config.ac.                          |
        |                                                              |
        | Do not hesitate to contact your system administrator in      |
        | case of doubt or if you need linear algebra libraries        |
        | installed into your local high-performance computing         |
        | environment.                                                 |
        +--------------------------------------------------------------+


        +--------------------------------------------------------------+
        | About the Intel Fortran compiler                             |
        +--------------------------------------------------------------+
        | Your compiler will work properly only if the LD_LIBRARY_PATH |
        | and INTEL_LICENSE_FILE environment variables are correctly   |
        | set-up. Please make sure that this is the case before        |
        | building ABINIT.                                             |
        |                                                              |
        | In most cases it means sourcing a script in the Intel        |
        | compiler install directory, e.g.:                            |
        |                                                              |
        | . /opt/intel/fc/9.1/bin/ifortvars.sh                         |
        |                                                              |
        | for a Bourne-like shell (do not forget the leading dot), or  |
        |                                                              |
        | source /opt/intel/fc/9.1/bin/ifortvars.csh                   |
        |                                                              |
        | for a C-like shell.                                          |
        |                                                              |
        | If you do not know what this is all about, please refer to   |
        | the Intel documentation or ask your system administrator.    |
        |                                                              |
        | Please note that the same holds for the Intel C and C++      |
        | compilers.                                                   |
        +--------------------------------------------------------------+


Summary of important options:

  * C compiler      : gnu version 4.1
  * Fortran compiler: intel version 10.0
  * architecture    : amd opteron (64 bits)

  * debugging       : basic
  * optimizations   : standard

  * MPI    enabled  : yes
  * MPI-IO enabled  : yes
  * GPU    enabled  : no (none)

  * TRIO   flavor = netcdf-fallback+etsf_io-fallback
  * TIMER  flavor = abinit (libs: ignored)
  * LINALG flavor = netlib-fallback (libs: internal)
  * ALGO   flavor = none (libs: ignored)
  * FFT    flavor = none (libs: ignored)
  * MATH   flavor = none (libs: ignored)
  * DFT    flavor = libxc-fallback+atompaw-fallback+bigdft-fallback+wannier90-fallback

Configuration complete.
You may now type "make" to build ABINIT.
(or, on a SMP machine, "make mj4", or "make multi multi_nprocs=<n>")

Attachments

step2_make_part1.log: Output of the make process (error at atompaw build); (256 KiB) Downloaded 392 times

step2_make_part2.log: Output of the make process (error at atompaw build).. PART 2; (256 KiB) Downloaded 384 times

step2_make_part3.log: Output of the make process (error at atompaw build).. PART 3; (43.61 KiB) Downloaded 351 times

jbeuken: Posts: 365; Joined: Tue Aug 18, 2009 9:24 pm; Contact:
Contact jbeuken

Website

Re: abinit-6.12.1. Compiler error at ATOMPAW

Quote

Post by jbeuken » Wed Mar 07, 2012 11:13 am

Hi temok,

we have a testfarm to test nightly abinit ( http://www.abinit.org/developers/abinit-dev-status/nightly-builds/abinit-6.12 )

one of the bots use "ifort 10.1" but unfortunately, the build is without any plugins !

the "fortcom: Severe: **Internal compiler error: internal abort" is compiler related then the first thing to try is to update your compiler

10.0 -> 10.1

if I have a little time, I try to compile atompaw on our bot

regards

jmb

------
Jean-Michel Beuken
Computer Scientist

jbeuken: Posts: 365; Joined: Tue Aug 18, 2009 9:24 pm; Contact:
Contact jbeuken

Website

Re: abinit-6.12.1. Compiler error at ATOMPAW

Quote

Post by jbeuken » Wed Mar 07, 2012 11:54 am

Hi temok,

I succeeded in compile with
- abinit 6.12.2
- ifort 10.1.008
- atompaw 3.0.1.3
- wannier90 1.2.0.1
- bigdft 1.6
- libxc 1.1.0

this is my ".ac" file for configure :

Code: Select all

CC="/cvos/shared/apps/intel/cce/10.1.008/bin/icc"
CXX="/cvos/shared/apps/intel/cce/10.1.008/bin/icpc"
FC="/cvos/shared/apps/intel/fce/10.1.008/bin/ifort"
enable_mpi="no"
with_trio_flavor="none"
with_linalg_flavor="none"
with_dft_flavor="atompaw+bigdft+libxc+wannier90"
enable_clib="yes"
enable_gw_dpc="yes"
enable_maintainer_checks="no"
enable_test_timeout="yes"
enable_gui_build="no"

regards

jmb

------
Jean-Michel Beuken
Computer Scientist

temok: Posts: 39; Joined: Tue Jun 08, 2010 1:44 am

Re: abinit-6.12.1. Compiler error at ATOMPAW

Quote

Post by temok » Tue Mar 13, 2012 5:42 am

Dear Beuken,

Thanks for your kind reply and for doing the serial test installation.
Following up my case, I did the following updates:

ifort from 10.0 (2007.04.26) --> 12.1.3 (2012.02.12)
openmpi from 1.4.2 --> 1.4.5 (Released: Feb 14, 2012)

In order to install ABINIT v6.12.1 (Jan 31, 2012).

It turn out that the serial installation was successful, but the parallel installation failed.
From this I guess the problem is likely to be related to openMPI more than to ifort.

Altought the parallel installation still fails at the atompaw stage, now the error is different.

Before (ifort 10.0, openmpi 1.4.2) it was:

Code: Select all

fortcom: Severe: **Internal compiler error: internal abort** 
ifort: error #10014: problem during multi-file optimization compilation (code 3)

Now (ifort 12.1, openmpi 1.4.5) it is

Code: Select all

file format not recognized 
../openmpi-1.4.5/lib: file not recognized: Is a directory

Later I also tried with an intermediate version of openmpi (v 1.4.4, Oct 11, 2011) but the error is identical to that obtained using openmpi 1.4.5.

Next lines are the tail of make.log

Code: Select all

cd sources/atompaw-3.0.1.3 && make 
make[3]: Entering directory `/home/temok/opt/abinit-6.12.1/build-parallel/fallbacks/sources/atompaw-3.0.1.3'
make  all-recursive
make[4]: Entering directory `/home/temok/opt/abinit-6.12.1/build-parallel/fallbacks/sources/atompaw-3.0.1.3'
Making all in src
make[5]: Entering directory `/home/temok/opt/abinit-6.12.1/build-parallel/fallbacks/sources/atompaw-3.0.1.3/src'
/bin/sh ../libtool --tag=FC   --mode=compile /home/temok/opt/openmpi-1.4.5/bin/mpif90  -free -g -extend-source -vec-report0 -noaltparam -nofpscomp  -O2 -g -O2 -I/home/temok/opt/abinit-6.12.1/build-parallel/fallbacks/exports/include -c -o atomdata.lo atomdata.f90
libtool: compile:  /home/temok/opt/openmpi-1.4.5/bin/mpif90 -free -g -extend-source -vec-report0 -noaltparam -nofpscomp -O2 -g -O2 -I/home/temok/opt/abinit-6.12.1/build-parallel/fallbacks/exports/include -c atomdata.f90 -o atomdata.o
/bin/sh ../libtool --tag=FC   --mode=compile /home/temok/opt/openmpi-1.4.5/bin/mpif90  -free -g -extend-source -vec-report0 -noaltparam -nofpscomp  -O2 -g -O2 -I/home/temok/opt/abinit-6.12.1/build-parallel/fallbacks/exports/include -c -o globalmath.lo globalmath.f90
libtool: compile:  /home/temok/opt/openmpi-1.4.5/bin/mpif90 -free -g -extend-source -vec-report0 -noaltparam -nofpscomp -O2 -g -O2 -I/home/temok/opt/abinit-6.12.1/build-parallel/fallbacks/exports/include -c globalmath.f90 -o globalmath.o
/bin/sh ../libtool --tag=FC   --mode=compile /home/temok/opt/openmpi-1.4.5/bin/mpif90  -free -g -extend-source -vec-report0 -noaltparam -nofpscomp  -O2 -g -O2 -I/home/temok/opt/abinit-6.12.1/build-parallel/fallbacks/exports/include -c -o gridmod.lo gridmod.f90
libtool: compile:  /home/temok/opt/openmpi-1.4.5/bin/mpif90 -free -g -extend-source -vec-report0 -noaltparam -nofpscomp -O2 -g -O2 -I/home/temok/opt/abinit-6.12.1/build-parallel/fallbacks/exports/include -c gridmod.f90 -o gridmod.o
/bin/sh ../libtool --tag=FC   --mode=compile /home/temok/opt/openmpi-1.4.5/bin/mpif90 -DHAVE_CONFIG_H -I. -I..   -I/home/temok/opt/abinit-6.12.1/build-parallel/fallbacks/exports/include -I/home/temok/opt/abinit-6.12.1/build-parallel/fallbacks/exports/include  -free -g -extend-source -vec-report0 -noaltparam -nofpscomp  -O2 -g -O2 -I/home/temok/opt/abinit-6.12.1/build-parallel/fallbacks/exports/include -c -o libxc_mod.lo libxc_mod.F90
libtool: compile:  /home/temok/opt/openmpi-1.4.5/bin/mpif90 -DHAVE_CONFIG_H -I. -I.. -I/home/temok/opt/abinit-6.12.1/build-parallel/fallbacks/exports/include -I/home/temok/opt/abinit-6.12.1/build-parallel/fallbacks/exports/include -free -g -extend-source -vec-report0 -noaltparam -nofpscomp -O2 -g -O2 -I/home/temok/opt/abinit-6.12.1/build-parallel/fallbacks/exports/include -c libxc_mod.F90 -o libxc_mod.o
/bin/sh ../libtool --tag=FC   --mode=compile /home/temok/opt/openmpi-1.4.5/bin/mpif90  -free -g -extend-source -vec-report0 -noaltparam -nofpscomp  -O2 -g -O2 -I/home/temok/opt/abinit-6.12.1/build-parallel/fallbacks/exports/include -c -o excor.lo excor.f90
libtool: compile:  /home/temok/opt/openmpi-1.4.5/bin/mpif90 -free -g -extend-source -vec-report0 -noaltparam -nofpscomp -O2 -g -O2 -I/home/temok/opt/abinit-6.12.1/build-parallel/fallbacks/exports/include -c excor.f90 -o excor.o
/bin/sh ../libtool --tag=FC   --mode=compile /home/temok/opt/openmpi-1.4.5/bin/mpif90  -free -g -extend-source -vec-report0 -noaltparam -nofpscomp  -O2 -g -O2 -I/home/temok/opt/abinit-6.12.1/build-parallel/fallbacks/exports/include -c -o interpolation_mod.lo interpolation_mod.f90
libtool: compile:  /home/temok/opt/openmpi-1.4.5/bin/mpif90 -free -g -extend-source -vec-report0 -noaltparam -nofpscomp -O2 -g -O2 -I/home/temok/opt/abinit-6.12.1/build-parallel/fallbacks/exports/include -c interpolation_mod.f90 -o interpolation_mod.o
/bin/sh ../libtool --tag=FC   --mode=compile /home/temok/opt/openmpi-1.4.5/bin/mpif90  -free -g -extend-source -vec-report0 -noaltparam -nofpscomp  -O2 -g -O2 -I/home/temok/opt/abinit-6.12.1/build-parallel/fallbacks/exports/include -c -o pkginfo.lo pkginfo.f90
libtool: compile:  /home/temok/opt/openmpi-1.4.5/bin/mpif90 -free -g -extend-source -vec-report0 -noaltparam -nofpscomp -O2 -g -O2 -I/home/temok/opt/abinit-6.12.1/build-parallel/fallbacks/exports/include -c pkginfo.f90 -o pkginfo.o
/bin/sh ../libtool --tag=FC   --mode=compile /home/temok/opt/openmpi-1.4.5/bin/mpif90  -free -g -extend-source -vec-report0 -noaltparam -nofpscomp  -O2 -g -O2 -I/home/temok/opt/abinit-6.12.1/build-parallel/fallbacks/exports/include -c -o anderson_realmix.lo anderson_realmix.f90
libtool: compile:  /home/temok/opt/openmpi-1.4.5/bin/mpif90 -free -g -extend-source -vec-report0 -noaltparam -nofpscomp -O2 -g -O2 -I/home/temok/opt/abinit-6.12.1/build-parallel/fallbacks/exports/include -c anderson_realmix.f90 -o anderson_realmix.o
/bin/sh ../libtool --tag=FC   --mode=compile /home/temok/opt/openmpi-1.4.5/bin/mpif90  -free -g -extend-source -vec-report0 -noaltparam -nofpscomp  -O2 -g -O2 -I/home/temok/opt/abinit-6.12.1/build-parallel/fallbacks/exports/include -c -o calcpotential.lo calcpotential.f90
libtool: compile:  /home/temok/opt/openmpi-1.4.5/bin/mpif90 -free -g -extend-source -vec-report0 -noaltparam -nofpscomp -O2 -g -O2 -I/home/temok/opt/abinit-6.12.1/build-parallel/fallbacks/exports/include -c calcpotential.f90 -o calcpotential.o
/bin/sh ../libtool --tag=FC   --mode=compile /home/temok/opt/openmpi-1.4.5/bin/mpif90  -free -g -extend-source -vec-report0 -noaltparam -nofpscomp  -O2 -g -O2 -I/home/temok/opt/abinit-6.12.1/build-parallel/fallbacks/exports/include -c -o radialsch.lo radialsch.f90
libtool: compile:  /home/temok/opt/openmpi-1.4.5/bin/mpif90 -free -g -extend-source -vec-report0 -noaltparam -nofpscomp -O2 -g -O2 -I/home/temok/opt/abinit-6.12.1/build-parallel/fallbacks/exports/include -c radialsch.f90 -o radialsch.o
/bin/sh ../libtool --tag=FC   --mode=compile /home/temok/opt/openmpi-1.4.5/bin/mpif90  -free -g -extend-source -vec-report0 -noaltparam -nofpscomp  -O2 -g -O2 -I/home/temok/opt/abinit-6.12.1/build-parallel/fallbacks/exports/include -c -o radialsr.lo radialsr.f90
libtool: compile:  /home/temok/opt/openmpi-1.4.5/bin/mpif90 -free -g -extend-source -vec-report0 -noaltparam -nofpscomp -O2 -g -O2 -I/home/temok/opt/abinit-6.12.1/build-parallel/fallbacks/exports/include -c radialsr.f90 -o radialsr.o
/bin/sh ../libtool --tag=FC   --mode=compile /home/temok/opt/openmpi-1.4.5/bin/mpif90  -free -g -extend-source -vec-report0 -noaltparam -nofpscomp  -O2 -g -O2 -I/home/temok/opt/abinit-6.12.1/build-parallel/fallbacks/exports/include -c -o aeatom.lo aeatom.f90
libtool: compile:  /home/temok/opt/openmpi-1.4.5/bin/mpif90 -free -g -extend-source -vec-report0 -noaltparam -nofpscomp -O2 -g -O2 -I/home/temok/opt/abinit-6.12.1/build-parallel/fallbacks/exports/include -c aeatom.f90 -o aeatom.o
/bin/sh ../libtool --tag=FC   --mode=compile /home/temok/opt/openmpi-1.4.5/bin/mpif90  -free -g -extend-source -vec-report0 -noaltparam -nofpscomp  -O2 -g -O2 -I/home/temok/opt/abinit-6.12.1/build-parallel/fallbacks/exports/include -c -o pseudo.lo pseudo.f90
libtool: compile:  /home/temok/opt/openmpi-1.4.5/bin/mpif90 -free -g -extend-source -vec-report0 -noaltparam -nofpscomp -O2 -g -O2 -I/home/temok/opt/abinit-6.12.1/build-parallel/fallbacks/exports/include -c pseudo.f90 -o pseudo.o
/bin/sh ../libtool --tag=FC   --mode=compile /home/temok/opt/openmpi-1.4.5/bin/mpif90  -free -g -extend-source -vec-report0 -noaltparam -nofpscomp  -O2 -g -O2 -I/home/temok/opt/abinit-6.12.1/build-parallel/fallbacks/exports/include -c -o abinitinterface.lo abinitinterface.f90
libtool: compile:  /home/temok/opt/openmpi-1.4.5/bin/mpif90 -free -g -extend-source -vec-report0 -noaltparam -nofpscomp -O2 -g -O2 -I/home/temok/opt/abinit-6.12.1/build-parallel/fallbacks/exports/include -c abinitinterface.f90 -o abinitinterface.o
abinitinterface.f90(667): remark #8290: Recommended relationship between field width 'W' and the number of fractional digits 'D' in this edit descriptor is 'W>=D+3'.
  write(std_out,'(a,2x,a,f4.1,a,f3.1,a,g6.1,a)') ch10,&
---------------------------------^
abinitinterface.f90(667): remark #8291: Recommended relationship between field width 'W' and the number of fractional digits 'D' in this edit descriptor is 'W>=D+7'.
  write(std_out,'(a,2x,a,f4.1,a,f3.1,a,g6.1,a)') ch10,&
----------------------------------------^
abinitinterface.f90(696): remark #8290: Recommended relationship between field width 'W' and the number of fractional digits 'D' in this edit descriptor is 'W>=D+3'.
  write(std_out,'(a,2x,a,i3,a,f5.3,a)') ch10,&
-------------------------------^
abinitinterface.f90(1807): remark #8291: Recommended relationship between field width 'W' and the number of fractional digits 'D' in this edit descriptor is 'W>=D+7'.
  write(std_out,'(3(/,2x,a),2(/,2x,a,g10.4),4(/,2x,a,i4))') &
--------------------------------------^
abinitinterface.f90(1924): remark #8291: Recommended relationship between field width 'W' and the number of fractional digits 'D' in this edit descriptor is 'W>=D+7'.
   write (funit,'(1x,i1,1x,i1,1x,i4,1x,es22.16,15x,a,i1,a)') &
-----------------------------------------^
abinitinterface.f90(1928): remark #8291: Recommended relationship between field width 'W' and the number of fractional digits 'D' in this edit descriptor is 'W>=D+7'.
   write (funit,'(1x,i1,1x,i1,1x,i4,1x,es22.16,1x,es22.16,a,i1,a)') &
-----------------------------------------^
abinitinterface.f90(1928): remark #8291: Recommended relationship between field width 'W' and the number of fractional digits 'D' in this edit descriptor is 'W>=D+7'.
   write (funit,'(1x,i1,1x,i1,1x,i4,1x,es22.16,1x,es22.16,a,i1,a)') &
----------------------------------------------------^
abinitinterface.f90(2294): remark #8291: Recommended relationship between field width 'W' and the number of fractional digits 'D' in this edit descriptor is 'W>=D+7'.
   write (funit,'(1x,i1,1x,i1,1x,i4,1x,es22.16,15x,a,i1,a)') &
-----------------------------------------^
abinitinterface.f90(2298): remark #8291: Recommended relationship between field width 'W' and the number of fractional digits 'D' in this edit descriptor is 'W>=D+7'.
   write (funit,'(1x,i1,1x,i1,1x,i4,1x,es22.16,1x,es22.16,a,i1,a)') &
-----------------------------------------^
abinitinterface.f90(2298): remark #8291: Recommended relationship between field width 'W' and the number of fractional digits 'D' in this edit descriptor is 'W>=D+7'.
   write (funit,'(1x,i1,1x,i1,1x,i4,1x,es22.16,1x,es22.16,a,i1,a)') &
----------------------------------------------------^
/bin/sh ../libtool --tag=FC   --mode=compile /home/temok/opt/openmpi-1.4.5/bin/mpif90  -free -g -extend-source -vec-report0 -noaltparam -nofpscomp  -O2 -g -O2 -I/home/temok/opt/abinit-6.12.1/build-parallel/fallbacks/exports/include -c -o basis.lo basis.f90
libtool: compile:  /home/temok/opt/openmpi-1.4.5/bin/mpif90 -free -g -extend-source -vec-report0 -noaltparam -nofpscomp -O2 -g -O2 -I/home/temok/opt/abinit-6.12.1/build-parallel/fallbacks/exports/include -c basis.f90 -o basis.o
/bin/sh ../libtool --tag=FC   --mode=compile /home/temok/opt/openmpi-1.4.5/bin/mpif90  -free -g -extend-source -vec-report0 -noaltparam -nofpscomp  -O2 -g -O2 -I/home/temok/opt/abinit-6.12.1/build-parallel/fallbacks/exports/include -c -o pwscfinterface.lo pwscfinterface.f90
libtool: compile:  /home/temok/opt/openmpi-1.4.5/bin/mpif90 -free -g -extend-source -vec-report0 -noaltparam -nofpscomp -O2 -g -O2 -I/home/temok/opt/abinit-6.12.1/build-parallel/fallbacks/exports/include -c pwscfinterface.f90 -o pwscfinterface.o
/bin/sh ../libtool --tag=FC   --mode=compile /home/temok/opt/openmpi-1.4.5/bin/mpif90  -free -g -extend-source -vec-report0 -noaltparam -nofpscomp  -O2 -g -O2 -I/home/temok/opt/abinit-6.12.1/build-parallel/fallbacks/exports/include -c -o atompaw_lib.lo atompaw_lib.f90
libtool: compile:  /home/temok/opt/openmpi-1.4.5/bin/mpif90 -free -g -extend-source -vec-report0 -noaltparam -nofpscomp -O2 -g -O2 -I/home/temok/opt/abinit-6.12.1/build-parallel/fallbacks/exports/include -c atompaw_lib.f90 -o atompaw_lib.o
/bin/sh ../libtool --tag=FC   --mode=link /home/temok/opt/openmpi-1.4.5/bin/mpif90  -free -g -extend-source -vec-report0 -noaltparam -nofpscomp  -O2 -g -O2 -I/home/temok/opt/abinit-6.12.1/build-parallel/fallbacks/exports/include -version-info 0:0:0  -o libatompaw.la -rpath /home/temok/opt/abinit-6.12.1/build-parallel/fallbacks/exports/lib abinitinterface.lo aeatom.lo anderson_realmix.lo atomdata.lo basis.lo calcpotential.lo excor.lo globalmath.lo gridmod.lo interpolation_mod.lo libxc_mod.lo pwscfinterface.lo pseudo.lo radialsch.lo radialsr.lo atompaw_lib.lo pkginfo.lo  -L/home/temok/opt/abinit-6.12.1/build-parallel/fallbacks/exports/lib -lxc -L/home/temok/opt/abinit-6.12.1/build-parallel/fallbacks/exports/lib -llapack -lblas -L/home/temok/opt/abinit-6.12.1/build-parallel/fallbacks/exports/lib -llapack -lblas -L/home/temok/opt/abinit-6.12.1/build-parallel/fallbacks/exports/lib -lnetcdf -L/home/temok/opt/abinit-6.12.1/build-parallel/fallbacks/exports/lib -lxc 
libtool: link: ar cru .libs/libatompaw.a  abinitinterface.o aeatom.o anderson_realmix.o atomdata.o basis.o calcpotential.o excor.o globalmath.o gridmod.o interpolation_mod.o libxc_mod.o pwscfinterface.o pseudo.o radialsch.o radialsr.o atompaw_lib.o pkginfo.o
libtool: link: ranlib .libs/libatompaw.a
libtool: link: ( cd ".libs" && rm -f "libatompaw.la" && ln -s "../libatompaw.la" "libatompaw.la" )
/home/temok/opt/openmpi-1.4.5/bin/mpif90  -free -g -extend-source -vec-report0 -noaltparam -nofpscomp  -O2 -g -O2 -I/home/temok/opt/abinit-6.12.1/build-parallel/fallbacks/exports/include -c -o atompaw_prog.o atompaw_prog.f90
/bin/sh ../libtool --tag=FC   --mode=link /home/temok/opt/openmpi-1.4.5/bin/mpif90  -free -g -extend-source -vec-report0 -noaltparam -nofpscomp  -O2 -g -O2 -I/home/temok/opt/abinit-6.12.1/build-parallel/fallbacks/exports/include   -o atompaw atompaw_prog.o libatompaw.la -L/home/temok/opt/abinit-6.12.1/build-parallel/fallbacks/exports/lib -lxc -L/home/temok/opt/abinit-6.12.1/build-parallel/fallbacks/exports/lib -llapack -lblas -L/home/temok/opt/abinit-6.12.1/build-parallel/fallbacks/exports/lib -llapack -lblas -L/home/temok/opt/abinit-6.12.1/build-parallel/fallbacks/exports/lib -lnetcdf -L/home/temok/opt/abinit-6.12.1/build-parallel/fallbacks/exports/lib -lxc 
libtool: link: /home/temok/opt/openmpi-1.4.5/bin/mpif90 -free -g -extend-source -vec-report0 -noaltparam -nofpscomp -O2 -g -O2 -I/home/temok/opt/abinit-6.12.1/build-parallel/fallbacks/exports/include -o atompaw atompaw_prog.o  ./.libs/libatompaw.a -L/home/temok/opt/abinit-6.12.1/build-parallel/fallbacks/exports/lib -llapack -lblas /home/temok/opt/abinit-6.12.1/build-parallel/fallbacks/exports/lib/libnetcdf.a /home/temok/opt/openmpi-1.4.5/lib/libmpi_f90.so /home/temok/opt/openmpi-1.4.5/lib/libmpi_f77.so /home/temok/opt/openmpi-1.4.5/lib/libmpi.so /home/temok/opt/openmpi-1.4.5/lib/libopen-rte.so /home/temok/opt/openmpi-1.4.5/lib/libopen-pal.so -ldl -lnsl -lutil -lm /home/temok/opt/abinit-6.12.1/build-parallel/fallbacks/exports/lib/libxc.a -pthread -rpath /home/temok/opt/openmpi-1.4.5/lib -rpath /home/temok/opt/openmpi-1.4.5/lib
ifort: command line remark #10010: option '-pthread' is deprecated and will be removed in a future release. See '-help deprecated'
ifort: command line warning #10006: ignoring unknown option '-rpath'
ifort: command line warning #10006: ignoring unknown option '-rpath'
ipo: warning #11010: file format not recognized for /home/temok/opt/openmpi-1.4.5/lib
ipo: warning #11010: file format not recognized for /home/temok/opt/openmpi-1.4.5/lib
/home/temok/opt/openmpi-1.4.5/lib: file not recognized: Is a directory
make[5]: *** [atompaw] Error 1
make[5]: Leaving directory `/home/temok/opt/abinit-6.12.1/build-parallel/fallbacks/sources/atompaw-3.0.1.3/src'
make[4]: *** [all-recursive] Error 1
make[4]: Leaving directory `/home/temok/opt/abinit-6.12.1/build-parallel/fallbacks/sources/atompaw-3.0.1.3'
make[3]: *** [all] Error 2
make[3]: Leaving directory `/home/temok/opt/abinit-6.12.1/build-parallel/fallbacks/sources/atompaw-3.0.1.3'
make[2]: *** [stamps/atompaw-build-stamp] Error 2
make[2]: Leaving directory `/home/temok/opt/abinit-6.12.1/build-parallel/fallbacks'
make[1]: [all-local] Error 2 (ignored)
Checking build of atompaw fallback
test -e stamps/atompaw-install-stamp
make[1]: *** [all-local] Error 1
make[1]: Leaving directory `/home/temok/opt/abinit-6.12.1/build-parallel/fallbacks'
make: *** [multi] Error 2

And the configuration file is attached
Thanks,
Temok

Attachments

build1-configure.log: (36.19 KiB) Downloaded 390 times

pouillon: Posts: 651; Joined: Wed Aug 19, 2009 10:08 am; Location: Spain; Contact:
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Re: abinit-6.12.1. Compiler error at ATOMPAW

Quote

Post by pouillon » Tue Mar 13, 2012 4:34 pm

Unless you do need AtomPAW, I suggest you configure Abinit with the --with-dft-flavor="bigdft+libxc+wannier90" for now. Do not hesitate to remove BigDFT and Wannier90 as well if they fail. This will improve in Abinit 6.14.

If you really need AtomPAW, BigDFT, and/or Wannier90, and if they cannot be built within Abinit, I encourage you to build them separately. There are indeed situations where the build parameters of Abinit cannot be used for the fallbacks. You already have the source tarballs in ~/.abinit/tarballs/ on your computer.

Yann Pouillon
Simune Atomistics
Donostia-San Sebastián, Spain

jbeuken: Posts: 365; Joined: Tue Aug 18, 2009 9:24 pm; Contact:
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Re: abinit-6.12.1. Compiler error at ATOMPAW

Quote

Post by jbeuken » Fri Mar 16, 2012 9:18 pm

Hello Temok,

for info, I succeed to compile abinit 6.12.2 with ifort 12.1.3.293 and openmpi 1.4.5 under Fedora 16

tests are the config file :

1) for openmpi

Code: Select all

#!/bin/bash
export CPP="icc -E"
export CC=icc
export CFLAGS="-O2 -vec-report0"
export CXX=icpc
export CXXFLAGS="-O2 -vec-report0"
#
export F77=ifort
export F77FLAGS="-vec-report0 -O2 -mp"
#
export FC=ifort
export FCFLAGS="-vec-report0 -O2 -mp"
#
../configure --prefix=/usr/local/openmpi_intel \
            --disable-ipv6 \
            --enable-mpi-profile \
            --enable-static --disable-shared \
            --enable-contrib-no-build=libnbc,vt \
            --enable-mca-no-build=maffinity,btl-portals \
            --enable-mpi-f77 --enable-mpi-f90 \
            --disable-mpi-cxx --disable-mpi-cxx-seek \
            --with-wrapper-ldflags="-shared-intel"

2) for abinit, my ac file is :

Code: Select all

enable_mpi="yes"
with_mpi_prefix="/usr/local/openmpi_intel"
with_fft_flavor="fftw3"
with_fft_libs="-L/opt/intel/composerxe/mkl/lib/intel64 -Wl,--start-group  -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -Wl,--end-group"
with_linalg_flavor="mkl"
with_linalg_libs="-L/opt/intel/composerxe/mkl/lib/intel64 -Wl,--start-group  -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -Wl,--end-group"
with_dft_flavor="atompaw+bigdft+libxc+wannier90"
enable_clib="yes"
enable_gw_dpc="yes"
enable_maintainer_checks="no"
enable_test_timeout="yes"
enable_gui_build="no"

only for you

, this is the preliminary results of test suite obtained today :

Code: Select all

beuken_6.12.2-private/r938
======================================================
Tests SEQ start at 23:41 and done after     1592s 

test built_in OK
========================================================
     Serie  #tests  #succes  #passed  #failed  #missing 
========================================================
   atompaw     1        1       0       0          0
    bigdft    13       13       0       0          0
   etsf_io     9        9       0       0          0
      fast    27       27       0       0          0
      gwdp    31       18      13       0          0
     libxc    16       13       2       1          0
 tutoplugs     4        0       4       0          0
tutorespfn    46       31      14       1          0
  tutorial    57       40      17       0          0
   unitary     4        2       0       2          0
        v1    96       94       2       0          0
        v2    95       82       8       5          0
        v3    93       82      11       0          0
        v4    94       73      18       3          0
        v5    99       67      31       1          0
        v6   103       83      18       2          0
 wannier90     3        0       3       0          0
     paral    66       47      19       0          0
     mpiio     9        7       2       0          0
========================================================
Paral Tests DONE ( time elapsed: 638s ) 
========================================================
Builder : toum-ifort12
Powered by Analysis V2.9.1rc4
Date : 03/16/2012
========================================================

the failed tests are related to numerical diff with reference... not serious... I hope...

regards

jmb

------
Jean-Michel Beuken
Computer Scientist

temok: Posts: 39; Joined: Tue Jun 08, 2010 1:44 am

Re: abinit-6.12.1. Compiler error at ATOMPAW

Quote

Post by temok » Sun Mar 25, 2012 8:31 pm

Dear Pouillon,

Thank you very much for your kind replies.

I followed your advise and set off the build of AtomPaw for the parallel build
--with-dft_flavor="bigdft+libxc+wannier90"
and the make process turn out successful (adding atompaw fails)

I also build a serial version with the standard dft-flavor,
--with-dft_flavor="atompaw+bigdft+libxc+wannier90"
and the make process was also succesful.

Nonetheless on both builds the tests fail.

Serial Build. Typing 'make testin_1' in the build directory gives:
make: *** No rule to make target `testin_1'. Stop.

Typing 'make tests_in' in the same build directory gives:

Code: Select all

make basic_tests 
make[1]: Entering directory `/home/temok/opt/abinit-6.12.2/build-serial'
cd ./tests && make tests_in 
make[2]: Entering directory `/home/temok/opt/abinit-6.12.2/build-serial/tests'
make testin_1 testin_2 testin_3 testin_bigdft testin_etsf_io testin_libxc testin_wannier90
make[3]: Entering directory `/home/temok/opt/abinit-6.12.2/build-serial/tests'
echo "Running built-in test in_1"
Running built-in test in_1
timeout="0" perl ../../tests/Scripts/run-basic-tests.pl built-in in_1 /home/temok/opt/abinit-6.12.2/build-serial/tests/../../tests
../../../src/98_main/abinit: symbol lookup error: ../../../src/98_main/abinit: undefined symbol: for_array_copy_in
echo "Running built-in test in_2"
Running built-in test in_2
timeout="0" perl ../../tests/Scripts/run-basic-tests.pl built-in in_2 /home/temok/opt/abinit-6.12.2/build-serial/tests/../../tests
../../../src/98_main/abinit: symbol lookup error: ../../../src/98_main/abinit: undefined symbol: for_array_copy_in
echo "Running built-in test in_3"
Running built-in test in_3
timeout="0" perl ../../tests/Scripts/run-basic-tests.pl built-in in_3 /home/temok/opt/abinit-6.12.2/build-serial/tests/../../tests
../../../src/98_main/abinit: symbol lookup error: ../../../src/98_main/abinit: undefined symbol: for_array_copy_in
echo "Running built-in test in_bigdft"
Running built-in test in_bigdft
timeout="0" perl ../../tests/Scripts/run-basic-tests.pl built-in in_bigdft /home/temok/opt/abinit-6.12.2/build-serial/tests/../../tests
../../../src/98_main/abinit: symbol lookup error: ../../../src/98_main/abinit: undefined symbol: for_array_copy_in
echo "Running built-in test in_etsf_io"
Running built-in test in_etsf_io
timeout="0" perl ../../tests/Scripts/run-basic-tests.pl built-in in_etsf_io /home/temok/opt/abinit-6.12.2/build-serial/tests/../../tests
../../../src/98_main/abinit: symbol lookup error: ../../../src/98_main/abinit: undefined symbol: for_array_copy_in
echo "Running built-in test in_libxc"
Running built-in test in_libxc
timeout="0" perl ../../tests/Scripts/run-basic-tests.pl built-in in_libxc /home/temok/opt/abinit-6.12.2/build-serial/tests/../../tests
../../../src/98_main/abinit: symbol lookup error: ../../../src/98_main/abinit: undefined symbol: for_array_copy_in
echo "Running built-in test in_wannier90"
Running built-in test in_wannier90
timeout="0" perl ../../tests/Scripts/run-basic-tests.pl built-in in_wannier90 /home/temok/opt/abinit-6.12.2/build-serial/tests/../../tests
../../../src/98_main/abinit: symbol lookup error: ../../../src/98_main/abinit: undefined symbol: for_array_copy_in
make[3]: Leaving directory `/home/temok/opt/abinit-6.12.2/build-serial/tests'
make[2]: Leaving directory `/home/temok/opt/abinit-6.12.2/build-serial/tests'
make[1]: Leaving directory `/home/temok/opt/abinit-6.12.2/build-serial

Parallel build.
Typing 'make testin_1' in the build directory gives:
make: *** No rule to make target `testin_1'. Stop.

Typing 'make tests_in' in the same build directory gives:

Code: Select all

make basic_tests 
make[1]: Entering directory `/home/temok/opt/abinit-6.12.2/build-parallel2'
cd ./tests && make tests_in 
make[2]: Entering directory `/home/temok/opt/abinit-6.12.2/build-parallel2/tests'
make testin_1 testin_2 testin_3 testin_bigdft testin_etsf_io testin_libxc testin_wannier90
make[3]: Entering directory `/home/temok/opt/abinit-6.12.2/build-parallel2/tests'
echo "Running built-in test in_1"
Running built-in test in_1
timeout="0" perl ../../tests/Scripts/run-basic-tests.pl built-in in_1 /home/temok/opt/abinit-6.12.2/build-parallel2/tests/../../tests
../../../src/98_main/abinit: symbol lookup error: ../../../src/98_main/abinit: undefined symbol: for_array_copy_in
echo "Running built-in test in_2"
Running built-in test in_2
timeout="0" perl ../../tests/Scripts/run-basic-tests.pl built-in in_2 /home/temok/opt/abinit-6.12.2/build-parallel2/tests/../../tests
../../../src/98_main/abinit: symbol lookup error: ../../../src/98_main/abinit: undefined symbol: for_array_copy_in
echo "Running built-in test in_3"
Running built-in test in_3
timeout="0" perl ../../tests/Scripts/run-basic-tests.pl built-in in_3 /home/temok/opt/abinit-6.12.2/build-parallel2/tests/../../tests
../../../src/98_main/abinit: symbol lookup error: ../../../src/98_main/abinit: undefined symbol: for_array_copy_in
echo "Running built-in test in_bigdft"
Running built-in test in_bigdft
timeout="0" perl ../../tests/Scripts/run-basic-tests.pl built-in in_bigdft /home/temok/opt/abinit-6.12.2/build-parallel2/tests/../../tests
../../../src/98_main/abinit: symbol lookup error: ../../../src/98_main/abinit: undefined symbol: for_array_copy_in
echo "Running built-in test in_etsf_io"
Running built-in test in_etsf_io
timeout="0" perl ../../tests/Scripts/run-basic-tests.pl built-in in_etsf_io /home/temok/opt/abinit-6.12.2/build-parallel2/tests/../../tests
../../../src/98_main/abinit: symbol lookup error: ../../../src/98_main/abinit: undefined symbol: for_array_copy_in
echo "Running built-in test in_libxc"
Running built-in test in_libxc
timeout="0" perl ../../tests/Scripts/run-basic-tests.pl built-in in_libxc /home/temok/opt/abinit-6.12.2/build-parallel2/tests/../../tests
../../../src/98_main/abinit: symbol lookup error: ../../../src/98_main/abinit: undefined symbol: for_array_copy_in
echo "Running built-in test in_wannier90"
Running built-in test in_wannier90
timeout="0" perl ../../tests/Scripts/run-basic-tests.pl built-in in_wannier90 /home/temok/opt/abinit-6.12.2/build-parallel2/tests/../../tests
../../../src/98_main/abinit: symbol lookup error: ../../../src/98_main/abinit: undefined symbol: for_array_copy_in
make[3]: Leaving directory `/home/temok/opt/abinit-6.12.2/build-parallel2/tests'
make[2]: Leaving directory `/home/temok/opt/abinit-6.12.2/build-parallel2/tests'
make[1]: Leaving directory `/home/temok/opt/abinit-6.12.2/build-parallel2'

Then I followed exactly the configuration options provided by Beuken on his reply of Fri Mar 16, 2012 4:18 pm. There I had make errors, which I will provide in a next message.

Thanks,
Temok

temok: Posts: 39; Joined: Tue Jun 08, 2010 1:44 am

Re: abinit-6.12.1. Compiler error at ATOMPAW

Quote

Post by temok » Sun Mar 25, 2012 8:57 pm

Dear Beuken,

Thanks for your last reply; I followed exactly your the configuration options provided in your reply of Fri Mar 16, 2012 4:18 pm.

I installed form scratch INTEL's C and Fortran compilers, same version as yours
(abinit 6.12.2 with ifort 12.1.3.293 and openmpi 1.4.5)

Config for openmpi:

Code: Select all

 ../configure \
   --prefix=/home/temok/opt/openmpi-1.4.5/build-ABINITForum/  \
    --disable-ipv6 \
    --enable-mpi-profile \
    --enable-static --disable-shared \
    --enable-contrib-no-build=libnbc,vt \
    --enable-mca-no-build=maffinity,btl-portals \
    --enable-mpi-f77 --enable-mpi-f90 \
    --disable-mpi-cxx --disable-mpi-cxx-seek \
    --with-wrapper-ldflags="-shared-intel" \
    CC=/home/temok/opt/intel/composer_xe_2011_sp1.9.293/bin/intel64/icc   \
  CPP="/home/temok/opt/intel/composer_xe_2011_sp1.9.293/bin/intel64/icc -E"  \
   CXX=/home/temok/opt/intel/composer_xe_2011_sp1.9.293/bin/intel64/icpc  \
    FC=/home/temok/opt/intel/composer_xe_2011_sp1.9.293/bin/intel64/ifort \
   F77=/home/temok/opt/intel/composer_xe_2011_sp1.9.293/bin/intel64/ifort \
    FCFLAGS="-vec-report0 -O2 -mp" \
   F77FLAGS="-vec-report0 -O2 -mp" \
     CFLAGS="-O2 -vec-report0"     \
   CXXFLAGS="-O2 -vec-report0"     \
 >& build1-configure.log

config for abinit 6.12.2 was:

Code: Select all

../configure  \
--enable-mpi="yes" \
--with-mpi-prefix="/home/temok/opt/openmpi-1.4.5/build-ABINITForum" \
--with-fft-flavor="fftw3" \
   --with-fft-libs="-L/home/temok/opt/intel/composer_xe_2011_sp1.9.293/mkl/lib/intel64 -Wl,--start-group  -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -Wl,--end-group" \
--with-linalg-flavor="mkl" \
--with-linalg-libs="-L/home/temok/opt/intel/composer_xe_2011_sp1.9.293/mkl/lib/intel64 -Wl,--start-group  -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -Wl,--end-group" \
--with-dft-flavor="atompaw+bigdft+libxc+wannier90" \
--enable-clib="yes" \
--enable-gw-dpc="yes" \
--enable-maintainer-checks="no" \
--enable-test-timeout="yes" \
 >& build1-configure.log

The tail of the make.log is:

Code: Select all

checking build system type... x86_64-unknown-linux-gnu
checking host system type... x86_64-unknown-linux-gnu
checking target system type... x86_64-unknown-linux-gnu
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /bin/mkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking for style of include used by make... GNU
checking for gcc... /home/temok/opt/openmpi-1.4.5/build-ABINITForum/bin/mpicc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... configure: error: in `/home/temok/opt/abinit-6.12.2/build-parallel-ABINITForum/fallbacks/sources/wannier90-1.2.0.1':
configure: error: cannot run C compiled programs.
If you meant to cross compile, use `--host'.
See `config.log' for more details.
make[2]: *** [stamps/wannier90-config-stamp] Error 1
make[2]: Leaving directory `/home/temok/opt/abinit-6.12.2/build-parallel-ABINITForum/fallbacks'
make[1]: [all-local] Error 2 (ignored)
Checking build of wannier90 fallback
test -e stamps/wannier90-install-stamp
make[1]: *** [all-local] Error 1
make[1]: Leaving directory `/home/temok/opt/abinit-6.12.2/build-parallel-ABINITForum/fallbacks'
make: *** [multi] Error 2

The attached files contain the log files for configuration and make processes.
Thank you very much, I sincerely appreciate your support and hope I can make this new version run on my system.
Best regards,
Temok

Attachments

config.log: (165.21 KiB) Downloaded 345 times

build2-make_part_1.log: (239.23 KiB) Downloaded 384 times

build2-make_part_2.log: (28.88 KiB) Downloaded 334 times

jbeuken: Posts: 365; Joined: Tue Aug 18, 2009 9:24 pm; Contact:
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Re: abinit-6.12.1. Compiler error at ATOMPAW

Quote

Post by jbeuken » Mon Mar 26, 2012 9:17 pm

Hi Temok,

2 things :

1) forget the ifort 12.1 : after analysis of tests results, there are too big errors then it seems that the compiler is not yet ready to use with Abinit
use the version 11.1.073 : it works with 6.12.2 , all plugins and openmpi 1.4.3

2) you have a problem with wannier90, then we need the config.log found in :

Code: Select all

/home/temok/opt/abinit-6.12.2/build-parallel-ABINITForum/fallbacks/sources/wannier90-1.2.0.1

regards

jmb

------
Jean-Michel Beuken
Computer Scientist

temok: Posts: 39; Joined: Tue Jun 08, 2010 1:44 am

Re: abinit-6.12.1. Compiler error at ATOMPAW

Quote

Post by temok » Tue Mar 27, 2012 7:50 am

1) forget the ifort 12.1 : after analysis of tests results, there are too big errors then it seems that the compiler is not yet ready to use with Abinit
use the version 11.1.073 : it works with 6.12.2 , all plugins and openmpi 1.4.3

Hello Beuken,

Now I used
- intel/Compiler/11.1/072
- openmpi-1.4.3
- abinit-6.12.2

config.log for openmpi 143 was (using gnu compiler for c/cpp):

Code: Select all

 ../configure \
   --prefix=/home/temok/opt/openmpi-1.4.3/build-ifort_11.1.072/  \
    FC=/home/temok/intel/Compiler/11.1/072/bin/intel64/ifort \
   F77=/home/temok/intel/Compiler/11.1/072/bin/intel64/ifort \
 >& build1-configure.log

config.log for ABINIT was:

Code: Select all

../configure  \
--enable-mpi="yes" \
--with-mpi-prefix="/home/temok/opt/openmpi-1.4.3/build-ifort_11.1.072" \
--with-fft-flavor="fftw3" \
   --with-fft-libs="-L/home/temok/intel/Compiler/11.1/072/mkl/lib/em64t -Wl,--start-group  -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -Wl,--end-group" \
--with-linalg-flavor="mkl" \
--with-linalg-libs="-L/home/temok/intel/Compiler/11.1/072/mkl/lib/em64t -Wl,--start-group  -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -Wl,--end-group" \
--with-dft-flavor="atompaw+bigdft+libxc+wannier90" \
--enable-clib="yes" \
--enable-gw-dpc="yes" \
--enable-maintainer-checks="no" \
--enable-test-timeout="yes" \
 >& build1-configure.log

And the make process still fails at AtomPaw stage. The tail of a make.log is:

Code: Select all

... lots of previous lines ...
cd sources/atompaw-3.0.1.3 && make 
make[3]: Entering directory `/home/temok/opt/abinit-6.12.2/build-parallel-ABINITForum3/fallbacks/sources/atompaw-3.0.1.3'
make  all-recursive
make[4]: Entering directory `/home/temok/opt/abinit-6.12.2/build-parallel-ABINITForum3/fallbacks/sources/atompaw-3.0.1.3'
Making all in src
make[5]: Entering directory `/home/temok/opt/abinit-6.12.2/build-parallel-ABINITForum3/fallbacks/sources/atompaw-3.0.1.3/src'
/bin/sh ../libtool --tag=FC   --mode=compile /home/temok/opt/openmpi-1.4.3/build-ifort_11.1.072/bin/mpif90  -free -g -extend-source -vec-report0 -noaltparam -nofpscomp  -O2 -g -O2 -I/home/temok/opt/abinit-6.12.2/build-parallel-ABINITForum3/fallbacks/exports/include -c -o atomdata.lo atomdata.f90
libtool: compile:  /home/temok/opt/openmpi-1.4.3/build-ifort_11.1.072/bin/mpif90 -free -g -extend-source -vec-report0 -noaltparam -nofpscomp -O2 -g -O2 -I/home/temok/opt/abinit-6.12.2/build-parallel-ABINITForum3/fallbacks/exports/include -c atomdata.f90 -o atomdata.o
/bin/sh ../libtool --tag=FC   --mode=compile /home/temok/opt/openmpi-1.4.3/build-ifort_11.1.072/bin/mpif90  -free -g -extend-source -vec-report0 -noaltparam -nofpscomp  -O2 -g -O2 -I/home/temok/opt/abinit-6.12.2/build-parallel-ABINITForum3/fallbacks/exports/include -c -o globalmath.lo globalmath.f90
libtool: compile:  /home/temok/opt/openmpi-1.4.3/build-ifort_11.1.072/bin/mpif90 -free -g -extend-source -vec-report0 -noaltparam -nofpscomp -O2 -g -O2 -I/home/temok/opt/abinit-6.12.2/build-parallel-ABINITForum3/fallbacks/exports/include -c globalmath.f90 -o globalmath.o
/bin/sh ../libtool --tag=FC   --mode=compile /home/temok/opt/openmpi-1.4.3/build-ifort_11.1.072/bin/mpif90  -free -g -extend-source -vec-report0 -noaltparam -nofpscomp  -O2 -g -O2 -I/home/temok/opt/abinit-6.12.2/build-parallel-ABINITForum3/fallbacks/exports/include -c -o gridmod.lo gridmod.f90
libtool: compile:  /home/temok/opt/openmpi-1.4.3/build-ifort_11.1.072/bin/mpif90 -free -g -extend-source -vec-report0 -noaltparam -nofpscomp -O2 -g -O2 -I/home/temok/opt/abinit-6.12.2/build-parallel-ABINITForum3/fallbacks/exports/include -c gridmod.f90 -o gridmod.o
/bin/sh ../libtool --tag=FC   --mode=compile /home/temok/opt/openmpi-1.4.3/build-ifort_11.1.072/bin/mpif90 -DHAVE_CONFIG_H -I. -I..   -I/home/temok/opt/abinit-6.12.2/build-parallel-ABINITForum3/fallbacks/exports/include -I/home/temok/opt/abinit-6.12.2/build-parallel-ABINITForum3/fallbacks/exports/include  -free -g -extend-source -vec-report0 -noaltparam -nofpscomp  -O2 -g -O2 -I/home/temok/opt/abinit-6.12.2/build-parallel-ABINITForum3/fallbacks/exports/include -c -o libxc_mod.lo libxc_mod.F90
libtool: compile:  /home/temok/opt/openmpi-1.4.3/build-ifort_11.1.072/bin/mpif90 -DHAVE_CONFIG_H -I. -I.. -I/home/temok/opt/abinit-6.12.2/build-parallel-ABINITForum3/fallbacks/exports/include -I/home/temok/opt/abinit-6.12.2/build-parallel-ABINITForum3/fallbacks/exports/include -free -g -extend-source -vec-report0 -noaltparam -nofpscomp -O2 -g -O2 -I/home/temok/opt/abinit-6.12.2/build-parallel-ABINITForum3/fallbacks/exports/include -c libxc_mod.F90 -o libxc_mod.o
/bin/sh ../libtool --tag=FC   --mode=compile /home/temok/opt/openmpi-1.4.3/build-ifort_11.1.072/bin/mpif90  -free -g -extend-source -vec-report0 -noaltparam -nofpscomp  -O2 -g -O2 -I/home/temok/opt/abinit-6.12.2/build-parallel-ABINITForum3/fallbacks/exports/include -c -o excor.lo excor.f90
libtool: compile:  /home/temok/opt/openmpi-1.4.3/build-ifort_11.1.072/bin/mpif90 -free -g -extend-source -vec-report0 -noaltparam -nofpscomp -O2 -g -O2 -I/home/temok/opt/abinit-6.12.2/build-parallel-ABINITForum3/fallbacks/exports/include -c excor.f90 -o excor.o
/bin/sh ../libtool --tag=FC   --mode=compile /home/temok/opt/openmpi-1.4.3/build-ifort_11.1.072/bin/mpif90  -free -g -extend-source -vec-report0 -noaltparam -nofpscomp  -O2 -g -O2 -I/home/temok/opt/abinit-6.12.2/build-parallel-ABINITForum3/fallbacks/exports/include -c -o interpolation_mod.lo interpolation_mod.f90
libtool: compile:  /home/temok/opt/openmpi-1.4.3/build-ifort_11.1.072/bin/mpif90 -free -g -extend-source -vec-report0 -noaltparam -nofpscomp -O2 -g -O2 -I/home/temok/opt/abinit-6.12.2/build-parallel-ABINITForum3/fallbacks/exports/include -c interpolation_mod.f90 -o interpolation_mod.o
/bin/sh ../libtool --tag=FC   --mode=compile /home/temok/opt/openmpi-1.4.3/build-ifort_11.1.072/bin/mpif90  -free -g -extend-source -vec-report0 -noaltparam -nofpscomp  -O2 -g -O2 -I/home/temok/opt/abinit-6.12.2/build-parallel-ABINITForum3/fallbacks/exports/include -c -o pkginfo.lo pkginfo.f90
libtool: compile:  /home/temok/opt/openmpi-1.4.3/build-ifort_11.1.072/bin/mpif90 -free -g -extend-source -vec-report0 -noaltparam -nofpscomp -O2 -g -O2 -I/home/temok/opt/abinit-6.12.2/build-parallel-ABINITForum3/fallbacks/exports/include -c pkginfo.f90 -o pkginfo.o
/bin/sh ../libtool --tag=FC   --mode=compile /home/temok/opt/openmpi-1.4.3/build-ifort_11.1.072/bin/mpif90  -free -g -extend-source -vec-report0 -noaltparam -nofpscomp  -O2 -g -O2 -I/home/temok/opt/abinit-6.12.2/build-parallel-ABINITForum3/fallbacks/exports/include -c -o anderson_realmix.lo anderson_realmix.f90
libtool: compile:  /home/temok/opt/openmpi-1.4.3/build-ifort_11.1.072/bin/mpif90 -free -g -extend-source -vec-report0 -noaltparam -nofpscomp -O2 -g -O2 -I/home/temok/opt/abinit-6.12.2/build-parallel-ABINITForum3/fallbacks/exports/include -c anderson_realmix.f90 -o anderson_realmix.o
/bin/sh ../libtool --tag=FC   --mode=compile /home/temok/opt/openmpi-1.4.3/build-ifort_11.1.072/bin/mpif90  -free -g -extend-source -vec-report0 -noaltparam -nofpscomp  -O2 -g -O2 -I/home/temok/opt/abinit-6.12.2/build-parallel-ABINITForum3/fallbacks/exports/include -c -o calcpotential.lo calcpotential.f90
libtool: compile:  /home/temok/opt/openmpi-1.4.3/build-ifort_11.1.072/bin/mpif90 -free -g -extend-source -vec-report0 -noaltparam -nofpscomp -O2 -g -O2 -I/home/temok/opt/abinit-6.12.2/build-parallel-ABINITForum3/fallbacks/exports/include -c calcpotential.f90 -o calcpotential.o
/bin/sh ../libtool --tag=FC   --mode=compile /home/temok/opt/openmpi-1.4.3/build-ifort_11.1.072/bin/mpif90  -free -g -extend-source -vec-report0 -noaltparam -nofpscomp  -O2 -g -O2 -I/home/temok/opt/abinit-6.12.2/build-parallel-ABINITForum3/fallbacks/exports/include -c -o radialsch.lo radialsch.f90
libtool: compile:  /home/temok/opt/openmpi-1.4.3/build-ifort_11.1.072/bin/mpif90 -free -g -extend-source -vec-report0 -noaltparam -nofpscomp -O2 -g -O2 -I/home/temok/opt/abinit-6.12.2/build-parallel-ABINITForum3/fallbacks/exports/include -c radialsch.f90 -o radialsch.o
/bin/sh ../libtool --tag=FC   --mode=compile /home/temok/opt/openmpi-1.4.3/build-ifort_11.1.072/bin/mpif90  -free -g -extend-source -vec-report0 -noaltparam -nofpscomp  -O2 -g -O2 -I/home/temok/opt/abinit-6.12.2/build-parallel-ABINITForum3/fallbacks/exports/include -c -o radialsr.lo radialsr.f90
libtool: compile:  /home/temok/opt/openmpi-1.4.3/build-ifort_11.1.072/bin/mpif90 -free -g -extend-source -vec-report0 -noaltparam -nofpscomp -O2 -g -O2 -I/home/temok/opt/abinit-6.12.2/build-parallel-ABINITForum3/fallbacks/exports/include -c radialsr.f90 -o radialsr.o
/bin/sh ../libtool --tag=FC   --mode=compile /home/temok/opt/openmpi-1.4.3/build-ifort_11.1.072/bin/mpif90  -free -g -extend-source -vec-report0 -noaltparam -nofpscomp  -O2 -g -O2 -I/home/temok/opt/abinit-6.12.2/build-parallel-ABINITForum3/fallbacks/exports/include -c -o aeatom.lo aeatom.f90
libtool: compile:  /home/temok/opt/openmpi-1.4.3/build-ifort_11.1.072/bin/mpif90 -free -g -extend-source -vec-report0 -noaltparam -nofpscomp -O2 -g -O2 -I/home/temok/opt/abinit-6.12.2/build-parallel-ABINITForum3/fallbacks/exports/include -c aeatom.f90 -o aeatom.o
/bin/sh ../libtool --tag=FC   --mode=compile /home/temok/opt/openmpi-1.4.3/build-ifort_11.1.072/bin/mpif90  -free -g -extend-source -vec-report0 -noaltparam -nofpscomp  -O2 -g -O2 -I/home/temok/opt/abinit-6.12.2/build-parallel-ABINITForum3/fallbacks/exports/include -c -o pseudo.lo pseudo.f90
libtool: compile:  /home/temok/opt/openmpi-1.4.3/build-ifort_11.1.072/bin/mpif90 -free -g -extend-source -vec-report0 -noaltparam -nofpscomp -O2 -g -O2 -I/home/temok/opt/abinit-6.12.2/build-parallel-ABINITForum3/fallbacks/exports/include -c pseudo.f90 -o pseudo.o
/bin/sh ../libtool --tag=FC   --mode=compile /home/temok/opt/openmpi-1.4.3/build-ifort_11.1.072/bin/mpif90  -free -g -extend-source -vec-report0 -noaltparam -nofpscomp  -O2 -g -O2 -I/home/temok/opt/abinit-6.12.2/build-parallel-ABINITForum3/fallbacks/exports/include -c -o abinitinterface.lo abinitinterface.f90
libtool: compile:  /home/temok/opt/openmpi-1.4.3/build-ifort_11.1.072/bin/mpif90 -free -g -extend-source -vec-report0 -noaltparam -nofpscomp -O2 -g -O2 -I/home/temok/opt/abinit-6.12.2/build-parallel-ABINITForum3/fallbacks/exports/include -c abinitinterface.f90 -o abinitinterface.o
/bin/sh ../libtool --tag=FC   --mode=compile /home/temok/opt/openmpi-1.4.3/build-ifort_11.1.072/bin/mpif90  -free -g -extend-source -vec-report0 -noaltparam -nofpscomp  -O2 -g -O2 -I/home/temok/opt/abinit-6.12.2/build-parallel-ABINITForum3/fallbacks/exports/include -c -o basis.lo basis.f90
libtool: compile:  /home/temok/opt/openmpi-1.4.3/build-ifort_11.1.072/bin/mpif90 -free -g -extend-source -vec-report0 -noaltparam -nofpscomp -O2 -g -O2 -I/home/temok/opt/abinit-6.12.2/build-parallel-ABINITForum3/fallbacks/exports/include -c basis.f90 -o basis.o
/bin/sh ../libtool --tag=FC   --mode=compile /home/temok/opt/openmpi-1.4.3/build-ifort_11.1.072/bin/mpif90  -free -g -extend-source -vec-report0 -noaltparam -nofpscomp  -O2 -g -O2 -I/home/temok/opt/abinit-6.12.2/build-parallel-ABINITForum3/fallbacks/exports/include -c -o pwscfinterface.lo pwscfinterface.f90
libtool: compile:  /home/temok/opt/openmpi-1.4.3/build-ifort_11.1.072/bin/mpif90 -free -g -extend-source -vec-report0 -noaltparam -nofpscomp -O2 -g -O2 -I/home/temok/opt/abinit-6.12.2/build-parallel-ABINITForum3/fallbacks/exports/include -c pwscfinterface.f90 -o pwscfinterface.o
/bin/sh ../libtool --tag=FC   --mode=compile /home/temok/opt/openmpi-1.4.3/build-ifort_11.1.072/bin/mpif90  -free -g -extend-source -vec-report0 -noaltparam -nofpscomp  -O2 -g -O2 -I/home/temok/opt/abinit-6.12.2/build-parallel-ABINITForum3/fallbacks/exports/include -c -o atompaw_lib.lo atompaw_lib.f90
libtool: compile:  /home/temok/opt/openmpi-1.4.3/build-ifort_11.1.072/bin/mpif90 -free -g -extend-source -vec-report0 -noaltparam -nofpscomp -O2 -g -O2 -I/home/temok/opt/abinit-6.12.2/build-parallel-ABINITForum3/fallbacks/exports/include -c atompaw_lib.f90 -o atompaw_lib.o
/bin/sh ../libtool --tag=FC   --mode=link /home/temok/opt/openmpi-1.4.3/build-ifort_11.1.072/bin/mpif90  -free -g -extend-source -vec-report0 -noaltparam -nofpscomp  -O2 -g -O2 -I/home/temok/opt/abinit-6.12.2/build-parallel-ABINITForum3/fallbacks/exports/include -version-info 0:0:0  -o libatompaw.la -rpath /home/temok/opt/abinit-6.12.2/build-parallel-ABINITForum3/fallbacks/exports/lib abinitinterface.lo aeatom.lo anderson_realmix.lo atomdata.lo basis.lo calcpotential.lo excor.lo globalmath.lo gridmod.lo interpolation_mod.lo libxc_mod.lo pwscfinterface.lo pseudo.lo radialsch.lo radialsr.lo atompaw_lib.lo pkginfo.lo  -L/home/temok/opt/abinit-6.12.2/build-parallel-ABINITForum3/fallbacks/exports/lib -lxc -L/home/temok/intel/Compiler/11.1/072/mkl/lib/em64t -Wl,--start-group  -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -Wl,--end-group -L/home/temok/opt/abinit-6.12.2/build-parallel-ABINITForum3/fallbacks/exports/lib -lnetcdf -L/home/temok/opt/abinit-6.12.2/build-parallel-ABINITForum3/fallbacks/exports/lib -lxc 
libtool: link: ar cru .libs/libatompaw.a  abinitinterface.o aeatom.o anderson_realmix.o atomdata.o basis.o calcpotential.o excor.o globalmath.o gridmod.o interpolation_mod.o libxc_mod.o pwscfinterface.o pseudo.o radialsch.o radialsr.o atompaw_lib.o pkginfo.o
libtool: link: ranlib .libs/libatompaw.a
libtool: link: ( cd ".libs" && rm -f "libatompaw.la" && ln -s "../libatompaw.la" "libatompaw.la" )
/home/temok/opt/openmpi-1.4.3/build-ifort_11.1.072/bin/mpif90  -free -g -extend-source -vec-report0 -noaltparam -nofpscomp  -O2 -g -O2 -I/home/temok/opt/abinit-6.12.2/build-parallel-ABINITForum3/fallbacks/exports/include -c -o atompaw_prog.o atompaw_prog.f90
/bin/sh ../libtool --tag=FC   --mode=link /home/temok/opt/openmpi-1.4.3/build-ifort_11.1.072/bin/mpif90  -free -g -extend-source -vec-report0 -noaltparam -nofpscomp  -O2 -g -O2 -I/home/temok/opt/abinit-6.12.2/build-parallel-ABINITForum3/fallbacks/exports/include   -o atompaw atompaw_prog.o libatompaw.la -L/home/temok/opt/abinit-6.12.2/build-parallel-ABINITForum3/fallbacks/exports/lib -lxc -L/home/temok/intel/Compiler/11.1/072/mkl/lib/em64t -Wl,--start-group  -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -Wl,--end-group -L/home/temok/opt/abinit-6.12.2/build-parallel-ABINITForum3/fallbacks/exports/lib -lnetcdf -L/home/temok/opt/abinit-6.12.2/build-parallel-ABINITForum3/fallbacks/exports/lib -lxc 
libtool: link: /home/temok/opt/openmpi-1.4.3/build-ifort_11.1.072/bin/mpif90 -free -g -extend-source -vec-report0 -noaltparam -nofpscomp -O2 -g -O2 -I/home/temok/opt/abinit-6.12.2/build-parallel-ABINITForum3/fallbacks/exports/include -o atompaw atompaw_prog.o --start-group --end-group  ./.libs/libatompaw.a -L/home/temok/opt/abinit-6.12.2/build-parallel-ABINITForum3/fallbacks/exports/lib -L/home/temok/intel/Compiler/11.1/072/mkl/lib/em64t -lmkl_intel_lp64 -lmkl_sequential -lmkl_core /home/temok/opt/abinit-6.12.2/build-parallel-ABINITForum3/fallbacks/exports/lib/libnetcdf.a /home/temok/opt/openmpi-1.4.3/build-ifort_11.1.072/lib/libmpi_f90.so /home/temok/opt/openmpi-1.4.3/build-ifort_11.1.072/lib/libmpi_f77.so /home/temok/opt/openmpi-1.4.3/build-ifort_11.1.072/lib/libmpi.so /home/temok/opt/openmpi-1.4.3/build-ifort_11.1.072/lib/libopen-rte.so /home/temok/opt/openmpi-1.4.3/build-ifort_11.1.072/lib/libopen-pal.so -ldl -lnsl -lutil -lm /home/temok/opt/abinit-6.12.2/build-parallel-ABINITForum3/fallbacks/exports/lib/libxc.a -pthread -rpath /home/temok/opt/openmpi-1.4.3/build-ifort_11.1.072/lib -rpath /home/temok/opt/openmpi-1.4.3/build-ifort_11.1.072/lib
ifort: command line warning #10006: ignoring unknown option '-fstart-group'
ifort: command line warning #10006: ignoring unknown option '-fend-group'
ifort: command line warning #10156: ignoring option '-r'; no argument required
ifort: command line warning #10156: ignoring option '-r'; no argument required
ipo: warning #11009: file format not recognized for /home/temok/opt/openmpi-1.4.3/build-ifort_11.1.072/lib
/home/temok/opt/openmpi-1.4.3/build-ifort_11.1.072/lib: [color=#FF0080]file not recognized: Is a directory[/color]
make[5]: *** [atompaw] Error 1
make[5]: Leaving directory `/home/temok/opt/abinit-6.12.2/build-parallel-ABINITForum3/fallbacks/sources/atompaw-3.0.1.3/src'
make[4]: *** [all-recursive] Error 1
make[4]: Leaving directory `/home/temok/opt/abinit-6.12.2/build-parallel-ABINITForum3/fallbacks/sources/atompaw-3.0.1.3'
make[3]: *** [all] Error 2
make[3]: Leaving directory `/home/temok/opt/abinit-6.12.2/build-parallel-ABINITForum3/fallbacks/sources/atompaw-3.0.1.3'
make[2]: *** [stamps/atompaw-build-stamp] Error 2
make[2]: Leaving directory `/home/temok/opt/abinit-6.12.2/build-parallel-ABINITForum3/fallbacks'
make[1]: [all-local] Error 2 (ignored)
Checking build of atompaw fallback
test -e stamps/atompaw-install-stamp
make[1]: *** [all-local] Error 1
make[1]: Leaving directory `/home/temok/opt/abinit-6.12.2/build-parallel-ABINITForum3/fallbacks'
make: *** [multi] Error 2

The config.log for atompaw is
(found at abinit-6.12.2/build-parallel-ABINITForum3/fallbacks/sources/atompaw-3.0.1.3 )

Code: Select all

This file contains any messages produced by compilers while
running configure, to aid debugging if configure makes a mistake.

It was created by AtomPAW configure 3.0.1.3, which was
generated by GNU Autoconf 2.65.  Invocation command line was

  $ ./configure --prefix=/home/temok/opt/abinit-6.12.2/build-parallel-ABINITForum3/fallbacks/exports --program-suffix=-abinit --with-linalg-libs=-L/home/temok/intel/Compiler/11.1/072/mkl/lib/em64t -Wl,--start-group  -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -Wl,--end-group --enable-libxc --with-libxc-incs=-I/home/temok/opt/abinit-6.12.2/build-parallel-ABINITForum3/fallbacks/exports/include --with-libxc-libs=-L/home/temok/opt/abinit-6.12.2/build-parallel-ABINITForum3/fallbacks/exports/lib -lxc --enable-static --disable-shared

## --------- ##
## Platform. ##
## --------- ##

hostname = panther-2
uname -m = x86_64
uname -r = 2.6.18-274.el5
uname -s = Linux
uname -v = #1 SMP Thu Jul 21 12:13:11 EDT 2011

/usr/bin/uname -p = unknown
/bin/uname -X     = unknown

/bin/arch              = x86_64
/usr/bin/arch -k       = unknown
/usr/convex/getsysinfo = unknown
/usr/bin/hostinfo      = unknown
/bin/machine           = unknown
/usr/bin/oslevel       = unknown
/bin/universe          = unknown

PATH: /opt/pgi/linux86-64/7.1-4/bin
PATH: /usr/lib64/openmpi/1.4-gcc/bin
PATH: /usr/kerberos/bin
PATH: /opt/intel/fce/10.0.023/bin
PATH: /usr/local/bin
PATH: /bin
PATH: /usr/bin
PATH: /home/temok/bin/
PATH: /home/temok/bin/AtomEye
PATH: /home/temok/opt/abinit-6.2.3/build-serial-ifort10-gcc41/src/98_main/
PATH: /home/temok/opt/openmpi-1.4.2/bin
PATH: /home/temok/myprograms/
PATH: ./


## ----------- ##
## Core tests. ##
## ----------- ##

configure:2375: regenerating the VERSION file
configure:2422: checking build system type
configure:2436: result: x86_64-unknown-linux-gnu
configure:2456: checking host system type
configure:2469: result: x86_64-unknown-linux-gnu
configure:2489: checking target system type
configure:2502: result: x86_64-unknown-linux-gnu
configure:2544: checking for a BSD-compatible install
configure:2612: result: /usr/bin/install -c
configure:2623: checking whether build environment is sane
configure:2673: result: yes
configure:2814: checking for a thread-safe mkdir -p
configure:2853: result: /bin/mkdir -p
configure:2866: checking for gawk
configure:2882: found /bin/gawk
configure:2893: result: gawk
configure:2904: checking whether make sets $(MAKE)
configure:2926: result: yes
configure:3047: checking for style of include used by make
configure:3075: result: GNU
configure:3145: checking for gcc
configure:3172: result: /home/temok/opt/openmpi-1.4.3/build-ifort_11.1.072/bin/mpicc
configure:3401: checking for C compiler version
configure:3410: /home/temok/opt/openmpi-1.4.3/build-ifort_11.1.072/bin/mpicc --version >&5
gcc (GCC) 4.1.2 20080704 (Red Hat 4.1.2-50)
Copyright (C) 2006 Free Software Foundation, Inc.
This is free software; see the source for copying conditions.  There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

configure:3421: $? = 0
configure:3410: /home/temok/opt/openmpi-1.4.3/build-ifort_11.1.072/bin/mpicc -v >&5
Using built-in specs.
Target: x86_64-redhat-linux
Configured with: ../configure --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --enable-shared --enable-threads=posix --enable-checking=release --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-libgcj-multifile --enable-languages=c,c++,objc,obj-c++,java,fortran,ada --enable-java-awt=gtk --disable-dssi --disable-plugin --with-java-home=/usr/lib/jvm/java-1.4.2-gcj-1.4.2.0/jre --with-cpu=generic --host=x86_64-redhat-linux
Thread model: posix
gcc version 4.1.2 20080704 (Red Hat 4.1.2-50)
configure:3421: $? = 0
configure:3410: /home/temok/opt/openmpi-1.4.3/build-ifort_11.1.072/bin/mpicc -V >&5
gcc: '-V' option must have argument
configure:3421: $? = 1
configure:3410: /home/temok/opt/openmpi-1.4.3/build-ifort_11.1.072/bin/mpicc -qversion >&5
gcc: unrecognized option '-qversion'
gcc: no input files
configure:3421: $? = 1
configure:3441: checking whether the C compiler works
configure:3463: /home/temok/opt/openmpi-1.4.3/build-ifort_11.1.072/bin/mpicc -g -O2  -I/home/temok/opt/abinit-6.12.2/build-parallel-ABINITForum3/fallbacks/exports/include   conftest.c -L/home/temok/opt/abinit-6.12.2/build-parallel-ABINITForum3/fallbacks/exports/lib -lnetcdf -L/home/temok/opt/abinit-6.12.2/build-parallel-ABINITForum3/fallbacks/exports/lib -lxc  >&5
configure:3467: $? = 0
configure:3516: result: yes
configure:3519: checking for C compiler default output file name
configure:3521: result: a.out
configure:3527: checking for suffix of executables
configure:3534: /home/temok/opt/openmpi-1.4.3/build-ifort_11.1.072/bin/mpicc -o conftest -g -O2  -I/home/temok/opt/abinit-6.12.2/build-parallel-ABINITForum3/fallbacks/exports/include   conftest.c -L/home/temok/opt/abinit-6.12.2/build-parallel-ABINITForum3/fallbacks/exports/lib -lnetcdf -L/home/temok/opt/abinit-6.12.2/build-parallel-ABINITForum3/fallbacks/exports/lib -lxc  >&5
configure:3538: $? = 0
configure:3560: result: 
configure:3582: checking whether we are cross compiling
configure:3590: /home/temok/opt/openmpi-1.4.3/build-ifort_11.1.072/bin/mpicc -o conftest -g -O2  -I/home/temok/opt/abinit-6.12.2/build-parallel-ABINITForum3/fallbacks/exports/include   conftest.c -L/home/temok/opt/abinit-6.12.2/build-parallel-ABINITForum3/fallbacks/exports/lib -lnetcdf -L/home/temok/opt/abinit-6.12.2/build-parallel-ABINITForum3/fallbacks/exports/lib -lxc  >&5
configure:3594: $? = 0
configure:3601: ./conftest
configure:3605: $? = 0
configure:3620: result: no
configure:3625: checking for suffix of object files
configure:3647: /home/temok/opt/openmpi-1.4.3/build-ifort_11.1.072/bin/mpicc -c -g -O2  -I/home/temok/opt/abinit-6.12.2/build-parallel-ABINITForum3/fallbacks/exports/include conftest.c >&5
configure:3651: $? = 0
configure:3672: result: o
configure:3676: checking whether we are using the GNU C compiler
configure:3695: /home/temok/opt/openmpi-1.4.3/build-ifort_11.1.072/bin/mpicc -c -g -O2  -I/home/temok/opt/abinit-6.12.2/build-parallel-ABINITForum3/fallbacks/exports/include conftest.c >&5
configure:3695: $? = 0
configure:3704: result: yes
configure:3713: checking whether /home/temok/opt/openmpi-1.4.3/build-ifort_11.1.072/bin/mpicc accepts -g
configure:3733: /home/temok/opt/openmpi-1.4.3/build-ifort_11.1.072/bin/mpicc -c -g  -I/home/temok/opt/abinit-6.12.2/build-parallel-ABINITForum3/fallbacks/exports/include conftest.c >&5
configure:3733: $? = 0
configure:3774: result: yes
configure:3791: checking for /home/temok/opt/openmpi-1.4.3/build-ifort_11.1.072/bin/mpicc option to accept ISO C89
configure:3855: /home/temok/opt/openmpi-1.4.3/build-ifort_11.1.072/bin/mpicc  -c -g -O2  -I/home/temok/opt/abinit-6.12.2/build-parallel-ABINITForum3/fallbacks/exports/include conftest.c >&5
configure:3855: $? = 0
configure:3868: result: none needed
configure:3890: checking dependency style of /home/temok/opt/openmpi-1.4.3/build-ifort_11.1.072/bin/mpicc
configure:4000: result: none
configure:4015: checking for a sed that does not truncate output
configure:4079: result: /bin/sed
configure:4097: checking for grep that handles long lines and -e
configure:4155: result: /bin/grep
configure:4160: checking for egrep
configure:4222: result: /bin/grep -E
configure:4227: checking for fgrep
configure:4289: result: /bin/grep -F
configure:4324: checking for ld used by /home/temok/opt/openmpi-1.4.3/build-ifort_11.1.072/bin/mpicc
configure:4391: result: /usr/bin/ld
configure:4398: checking if the linker (/usr/bin/ld) is GNU ld
configure:4413: result: yes
configure:4425: checking for BSD- or MS-compatible name lister (nm)
configure:4474: result: /usr/bin/nm -B
configure:4592: checking the name lister (/usr/bin/nm -B) interface
configure:4599: /home/temok/opt/openmpi-1.4.3/build-ifort_11.1.072/bin/mpicc -c -g -O2  -I/home/temok/opt/abinit-6.12.2/build-parallel-ABINITForum3/fallbacks/exports/include conftest.c >&5
configure:4602: /usr/bin/nm -B "conftest.o"
configure:4605: output
0000000000000000 B some_variable
configure:4612: result: BSD nm
configure:4615: checking whether ln -s works
configure:4619: result: yes
configure:4627: checking the maximum length of command line arguments
configure:4747: result: 98304
configure:4764: checking whether the shell understands some XSI constructs
configure:4774: result: yes
configure:4778: checking whether the shell understands "+="
configure:4784: result: yes
configure:4819: checking for /usr/bin/ld option to reload object files
configure:4826: result: -r
configure:4895: checking for objdump
configure:4911: found /usr/bin/objdump
configure:4922: result: objdump
configure:4954: checking how to recognize dependent libraries
configure:5150: result: pass_all
configure:5210: checking for ar
configure:5237: result: ar
configure:5315: checking for strip
configure:5331: found /usr/bin/strip
configure:5342: result: strip
configure:5414: checking for ranlib
configure:5441: result: ranlib
configure:5531: checking command to parse /usr/bin/nm -B output from /home/temok/opt/openmpi-1.4.3/build-ifort_11.1.072/bin/mpicc object
configure:5649: /home/temok/opt/openmpi-1.4.3/build-ifort_11.1.072/bin/mpicc -c -g -O2  -I/home/temok/opt/abinit-6.12.2/build-parallel-ABINITForum3/fallbacks/exports/include conftest.c >&5
configure:5652: $? = 0
configure:5656: /usr/bin/nm -B conftest.o \| sed -n -e 's/^.*[    ]\([ABCDGIRSTW][ABCDGIRSTW]*\)[    ][    ]*\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2 \2/p' \> conftest.nm
configure:5659: $? = 0
configure:5713: /home/temok/opt/openmpi-1.4.3/build-ifort_11.1.072/bin/mpicc -o conftest -g -O2  -I/home/temok/opt/abinit-6.12.2/build-parallel-ABINITForum3/fallbacks/exports/include   conftest.c conftstm.o >&5
configure:5716: $? = 0
configure:5754: result: ok
configure:5850: /home/temok/opt/openmpi-1.4.3/build-ifort_11.1.072/bin/mpicc -c -g -O2  -I/home/temok/opt/abinit-6.12.2/build-parallel-ABINITForum3/fallbacks/exports/include conftest.c >&5
configure:5853: $? = 0
configure:6563: checking how to run the C preprocessor
configure:6633: result: /home/temok/opt/openmpi-1.4.3/build-ifort_11.1.072/bin/mpicc -E
configure:6653: /home/temok/opt/openmpi-1.4.3/build-ifort_11.1.072/bin/mpicc -E  -I/home/temok/opt/abinit-6.12.2/build-parallel-ABINITForum3/fallbacks/exports/include conftest.c
configure:6653: $? = 0
configure:6667: /home/temok/opt/openmpi-1.4.3/build-ifort_11.1.072/bin/mpicc -E  -I/home/temok/opt/abinit-6.12.2/build-parallel-ABINITForum3/fallbacks/exports/include conftest.c
conftest.c:11:28: error: ac_nonexistent.h: No such file or directory
configure:6667: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "AtomPAW"
| #define PACKAGE_TARNAME "atompaw"
| #define PACKAGE_VERSION "3.0.1.3"
| #define PACKAGE_STRING "AtomPAW 3.0.1.3"
| #define PACKAGE_BUGREPORT "natalie@wfu.edu,marc.torrent@cea.fr"
| #define PACKAGE_URL ""
| #define PACKAGE "atompaw"
| #define VERSION "3.0.1.3"
| /* end confdefs.h.  */
| #include <ac_nonexistent.h>
configure:6696: checking for ANSI C header files
configure:6716: /home/temok/opt/openmpi-1.4.3/build-ifort_11.1.072/bin/mpicc -c -g -O2  -I/home/temok/opt/abinit-6.12.2/build-parallel-ABINITForum3/fallbacks/exports/include conftest.c >&5
configure:6716: $? = 0
configure:6789: /home/temok/opt/openmpi-1.4.3/build-ifort_11.1.072/bin/mpicc -o conftest -g -O2  -I/home/temok/opt/abinit-6.12.2/build-parallel-ABINITForum3/fallbacks/exports/include   conftest.c -L/home/temok/opt/abinit-6.12.2/build-parallel-ABINITForum3/fallbacks/exports/lib -lnetcdf -L/home/temok/opt/abinit-6.12.2/build-parallel-ABINITForum3/fallbacks/exports/lib -lxc  >&5
configure:6789: $? = 0
configure:6789: ./conftest
configure:6789: $? = 0
configure:6800: result: yes
configure:6813: checking for sys/types.h
configure:6813: /home/temok/opt/openmpi-1.4.3/build-ifort_11.1.072/bin/mpicc -c -g -O2  -I/home/temok/opt/abinit-6.12.2/build-parallel-ABINITForum3/fallbacks/exports/include conftest.c >&5
configure:6813: $? = 0
configure:6813: result: yes
configure:6813: checking for sys/stat.h
configure:6813: /home/temok/opt/openmpi-1.4.3/build-ifort_11.1.072/bin/mpicc -c -g -O2  -I/home/temok/opt/abinit-6.12.2/build-parallel-ABINITForum3/fallbacks/exports/include conftest.c >&5
configure:6813: $? = 0
configure:6813: result: yes
configure:6813: checking for stdlib.h
configure:6813: /home/temok/opt/openmpi-1.4.3/build-ifort_11.1.072/bin/mpicc -c -g -O2  -I/home/temok/opt/abinit-6.12.2/build-parallel-ABINITForum3/fallbacks/exports/include conftest.c >&5
configure:6813: $? = 0
configure:6813: result: yes
configure:6813: checking for string.h
configure:6813: /home/temok/opt/openmpi-1.4.3/build-ifort_11.1.072/bin/mpicc -c -g -O2  -I/home/temok/opt/abinit-6.12.2/build-parallel-ABINITForum3/fallbacks/exports/include conftest.c >&5
configure:6813: $? = 0
configure:6813: result: yes
configure:6813: checking for memory.h
configure:6813: /home/temok/opt/openmpi-1.4.3/build-ifort_11.1.072/bin/mpicc -c -g -O2  -I/home/temok/opt/abinit-6.12.2/build-parallel-ABINITForum3/fallbacks/exports/include conftest.c >&5
configure:6813: $? = 0
configure:6813: result: yes
configure:6813: checking for strings.h
configure:6813: /home/temok/opt/openmpi-1.4.3/build-ifort_11.1.072/bin/mpicc -c -g -O2  -I/home/temok/opt/abinit-6.12.2/build-parallel-ABINITForum3/fallbacks/exports/include conftest.c >&5
configure:6813: $? = 0
configure:6813: result: yes
configure:6813: checking for inttypes.h
configure:6813: /home/temok/opt/openmpi-1.4.3/build-ifort_11.1.072/bin/mpicc -c -g -O2  -I/home/temok/opt/abinit-6.12.2/build-parallel-ABINITForum3/fallbacks/exports/include conftest.c >&5
configure:6813: $? = 0
configure:6813: result: yes
configure:6813: checking for stdint.h
configure:6813: /home/temok/opt/openmpi-1.4.3/build-ifort_11.1.072/bin/mpicc -c -g -O2  -I/home/temok/opt/abinit-6.12.2/build-parallel-ABINITForum3/fallbacks/exports/include conftest.c >&5
configure:6813: $? = 0
configure:6813: result: yes
configure:6813: checking for unistd.h
configure:6813: /home/temok/opt/openmpi-1.4.3/build-ifort_11.1.072/bin/mpicc -c -g -O2  -I/home/temok/opt/abinit-6.12.2/build-parallel-ABINITForum3/fallbacks/exports/include conftest.c >&5
configure:6813: $? = 0
configure:6813: result: yes
configure:6828: checking for dlfcn.h
configure:6828: /home/temok/opt/openmpi-1.4.3/build-ifort_11.1.072/bin/mpicc -c -g -O2  -I/home/temok/opt/abinit-6.12.2/build-parallel-ABINITForum3/fallbacks/exports/include conftest.c >&5
configure:6828: $? = 0
configure:6828: result: yes
configure:7012: checking for objdir
configure:7027: result: .libs
configure:7319: checking if /home/temok/opt/openmpi-1.4.3/build-ifort_11.1.072/bin/mpicc supports -fno-rtti -fno-exceptions
configure:7337: /home/temok/opt/openmpi-1.4.3/build-ifort_11.1.072/bin/mpicc -c -g -O2  -I/home/temok/opt/abinit-6.12.2/build-parallel-ABINITForum3/fallbacks/exports/include -fno-rtti -fno-exceptions conftest.c >&5
cc1: warning: command line option "-fno-rtti" is valid for C++/ObjC++ but not for C
configure:7341: $? = 0
configure:7354: result: no
configure:7374: checking for /home/temok/opt/openmpi-1.4.3/build-ifort_11.1.072/bin/mpicc option to produce PIC
configure:7646: result: -fPIC -DPIC
configure:7658: checking if /home/temok/opt/openmpi-1.4.3/build-ifort_11.1.072/bin/mpicc PIC flag -fPIC -DPIC works
configure:7676: /home/temok/opt/openmpi-1.4.3/build-ifort_11.1.072/bin/mpicc -c -g -O2  -I/home/temok/opt/abinit-6.12.2/build-parallel-ABINITForum3/fallbacks/exports/include -fPIC -DPIC -DPIC conftest.c >&5
configure:7680: $? = 0
configure:7693: result: yes
configure:7717: checking if /home/temok/opt/openmpi-1.4.3/build-ifort_11.1.072/bin/mpicc static flag -static works
configure:7745: result: no
configure:7760: checking if /home/temok/opt/openmpi-1.4.3/build-ifort_11.1.072/bin/mpicc supports -c -o file.o
configure:7781: /home/temok/opt/openmpi-1.4.3/build-ifort_11.1.072/bin/mpicc -c -g -O2  -I/home/temok/opt/abinit-6.12.2/build-parallel-ABINITForum3/fallbacks/exports/include -o out/conftest2.o conftest.c >&5
configure:7785: $? = 0
configure:7807: result: yes
configure:7815: checking if /home/temok/opt/openmpi-1.4.3/build-ifort_11.1.072/bin/mpicc supports -c -o file.o
configure:7862: result: yes
configure:7895: checking whether the /home/temok/opt/openmpi-1.4.3/build-ifort_11.1.072/bin/mpicc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries
configure:8881: result: yes
configure:9120: checking dynamic linker characteristics
configure:9553: /home/temok/opt/openmpi-1.4.3/build-ifort_11.1.072/bin/mpicc -o conftest -g -O2  -I/home/temok/opt/abinit-6.12.2/build-parallel-ABINITForum3/fallbacks/exports/include   -Wl,-rpath -Wl,/foo conftest.c -L/home/temok/opt/abinit-6.12.2/build-parallel-ABINITForum3/fallbacks/exports/lib -lnetcdf -L/home/temok/opt/abinit-6.12.2/build-parallel-ABINITForum3/fallbacks/exports/lib -lxc  >&5
configure:9553: $? = 0
configure:9771: result: GNU/Linux ld.so
configure:9873: checking how to hardcode library paths into programs
configure:9898: result: immediate
configure:10418: checking whether stripping libraries is possible
configure:10423: result: yes
configure:10458: checking if libtool supports shared libraries
configure:10460: result: yes
configure:10463: checking whether to build shared libraries
configure:10484: result: no
configure:10487: checking whether to build static libraries
configure:10491: result: yes
configure:10635: checking for Fortran compiler version
configure:10644: /home/temok/opt/openmpi-1.4.3/build-ifort_11.1.072/bin/mpif90 --version >&5
ifort (IFORT) 11.1 20100414
Copyright (C) 1985-2010 Intel Corporation.  All rights reserved.

configure:10655: $? = 0
configure:10644: /home/temok/opt/openmpi-1.4.3/build-ifort_11.1.072/bin/mpif90 -v >&5
Version 11.1 
configure:10655: $? = 0
configure:10644: /home/temok/opt/openmpi-1.4.3/build-ifort_11.1.072/bin/mpif90 -V >&5
Intel(R) Fortran Intel(R) 64 Compiler Professional for applications running on Intel(R) 64, Version 11.1    Build 20100414 
Copyright (C) 1985-2010 Intel Corporation.  All rights reserved.
FOR NON-COMMERCIAL USE ONLY

configure:10655: $? = 0
configure:10644: /home/temok/opt/openmpi-1.4.3/build-ifort_11.1.072/bin/mpif90 -qversion >&5
ifort: command line warning #10006: ignoring unknown option '-qversion'
ifort: command line error: no files specified; for help type "ifort -help"
configure:10655: $? = 1
configure:10664: checking whether we are using the GNU Fortran compiler
configure:10677: /home/temok/opt/openmpi-1.4.3/build-ifort_11.1.072/bin/mpif90 -c -free -g -extend-source -vec-report0 -noaltparam -nofpscomp  -O2 -g -O2 -I/home/temok/opt/abinit-6.12.2/build-parallel-ABINITForum3/fallbacks/exports/include  conftest.F >&5
conftest.F(3): error #5082: Syntax error, found IDENTIFIER 'ME' when expecting one of: ( % : . = =>
       choke me
-------------^
compilation aborted for conftest.F (code 1)
configure:10677: $? = 1
configure: failed program was:
|       program main
| #ifndef __GNUC__
|        choke me
| #endif
| 
|       end
configure:10686: result: no
configure:10692: checking whether /home/temok/opt/openmpi-1.4.3/build-ifort_11.1.072/bin/mpif90 accepts -g
configure:10703: /home/temok/opt/openmpi-1.4.3/build-ifort_11.1.072/bin/mpif90 -c -g  conftest.f >&5
configure:10703: $? = 0
configure:10711: result: yes
configure:10844: checking if libtool supports shared libraries
configure:10846: result: yes
configure:10849: checking whether to build shared libraries
configure:10869: result: no
configure:10872: checking whether to build static libraries
configure:10876: result: yes
configure:10902: /home/temok/opt/openmpi-1.4.3/build-ifort_11.1.072/bin/mpif90 -c -free -g -extend-source -vec-report0 -noaltparam -nofpscomp  -O2 -g -O2 -I/home/temok/opt/abinit-6.12.2/build-parallel-ABINITForum3/fallbacks/exports/include  conftest.f >&5
configure:10905: $? = 0
configure:11033: checking for /home/temok/opt/openmpi-1.4.3/build-ifort_11.1.072/bin/mpif90 option to produce PIC
configure:11305: result: 
configure:11370: checking if /home/temok/opt/openmpi-1.4.3/build-ifort_11.1.072/bin/mpif90 static flag  works
/opt/intel/fce/10.0.023/lib/libimf.so: warning: warning: feupdateenv is not implemented and will always fail
configure:11398: result: yes
configure:11410: checking if /home/temok/opt/openmpi-1.4.3/build-ifort_11.1.072/bin/mpif90 supports -c -o file.o
configure:11431: /home/temok/opt/openmpi-1.4.3/build-ifort_11.1.072/bin/mpif90 -c -free -g -extend-source -vec-report0 -noaltparam -nofpscomp  -O2 -g -O2 -I/home/temok/opt/abinit-6.12.2/build-parallel-ABINITForum3/fallbacks/exports/include -o out/conftest2.o  conftest.f >&5
configure:11435: $? = 0
configure:11457: result: yes
configure:11462: checking if /home/temok/opt/openmpi-1.4.3/build-ifort_11.1.072/bin/mpif90 supports -c -o file.o
configure:11509: result: yes
configure:11539: checking whether the /home/temok/opt/openmpi-1.4.3/build-ifort_11.1.072/bin/mpif90 linker (/usr/bin/ld -m elf_x86_64) supports shared libraries
configure:12512: result: yes
configure:12649: checking dynamic linker characteristics
configure:13024: /home/temok/opt/openmpi-1.4.3/build-ifort_11.1.072/bin/mpif90 -o conftest -free -g -extend-source -vec-report0 -noaltparam -nofpscomp  -O2 -g -O2 -I/home/temok/opt/abinit-6.12.2/build-parallel-ABINITForum3/fallbacks/exports/include   -rpath /foo  conftest.f -L/home/temok/opt/abinit-6.12.2/build-parallel-ABINITForum3/fallbacks/exports/lib -lnetcdf -L/home/temok/opt/abinit-6.12.2/build-parallel-ABINITForum3/fallbacks/exports/lib -lxc  >&5
ifort: command line warning #10156: ignoring option '-r'; no argument required
ifort: error #10236: File not found:  '/foo'
configure:13024: $? = 1
configure: failed program was:
|       program main
| 
|       end
configure:13242: result: GNU/Linux ld.so
configure:13293: checking how to hardcode library paths into programs
configure:13318: result: immediate
configure:13414: setting linear algebra flavor to 'netlib'
configure:13421: checking whether make sets $(MAKE)
configure:13443: result: yes
configure:13453: checking whether ln -s works
configure:13457: result: yes
configure:13464: checking for a sed that does not truncate output
configure:13528: result: /bin/sed
configure:13537: checking for gawk
configure:13564: result: gawk
configure:13575: checking for grep that handles long lines and -e
configure:13633: result: /bin/grep
configure:13640: checking for egrep
configure:13702: result: /bin/grep -E
configure:13759: checking for perl
configure:13775: found /usr/bin/perl
configure:13786: result: perl
configure:13801: checking for latex
configure:13817: found /usr/bin/latex
configure:13828: result: latex
configure:13843: checking for dvipdf
configure:13859: found /usr/bin/dvipdf
configure:13870: result: dvipdf
configure:14043: checking for Fortran compiler version
configure:14052: /home/temok/opt/openmpi-1.4.3/build-ifort_11.1.072/bin/mpif90 --version >&5
ifort (IFORT) 11.1 20100414
Copyright (C) 1985-2010 Intel Corporation.  All rights reserved.

configure:14063: $? = 0
configure:14052: /home/temok/opt/openmpi-1.4.3/build-ifort_11.1.072/bin/mpif90 -v >&5
Version 11.1 
configure:14063: $? = 0
configure:14052: /home/temok/opt/openmpi-1.4.3/build-ifort_11.1.072/bin/mpif90 -V >&5
Intel(R) Fortran Intel(R) 64 Compiler Professional for applications running on Intel(R) 64, Version 11.1    Build 20100414 
Copyright (C) 1985-2010 Intel Corporation.  All rights reserved.
FOR NON-COMMERCIAL USE ONLY

configure:14063: $? = 0
configure:14052: /home/temok/opt/openmpi-1.4.3/build-ifort_11.1.072/bin/mpif90 -qversion >&5
ifort: command line warning #10006: ignoring unknown option '-qversion'
ifort: command line error: no files specified; for help type "ifort -help"
configure:14063: $? = 1
configure:14072: checking whether we are using the GNU Fortran compiler
configure:14094: result: no
configure:14100: checking whether /home/temok/opt/openmpi-1.4.3/build-ifort_11.1.072/bin/mpif90 accepts -g
configure:14119: result: yes
configure:14164: checking which type of Fortran compiler we have
configure:14524: result: intel 11.1
configure:14535: checking fortran 90 modules extension
configure:14562: /home/temok/opt/openmpi-1.4.3/build-ifort_11.1.072/bin/mpif90 -c -free -g -extend-source -vec-report0 -noaltparam -nofpscomp  -O2 -g -O2 -I/home/temok/opt/abinit-6.12.2/build-parallel-ABINITForum3/fallbacks/exports/include  conftest.f >&5
configure:14562: $? = 0
configure:14585: result: mod
configure:14600: checking for Fortran flag to compile .F90 files
configure:14616: /home/temok/opt/openmpi-1.4.3/build-ifort_11.1.072/bin/mpif90 -c -free -g -extend-source -vec-report0 -noaltparam -nofpscomp  -O2 -g -O2 -I/home/temok/opt/abinit-6.12.2/build-parallel-ABINITForum3/fallbacks/exports/include  conftest.F90 >&5
configure:14616: $? = 0
configure:14625: result: none
configure:14661: determining Fortran module case
configure:14675: /home/temok/opt/openmpi-1.4.3/build-ifort_11.1.072/bin/mpif90 -c -free -g -extend-source -vec-report0 -noaltparam -nofpscomp  -O2 -g -O2 -I/home/temok/opt/abinit-6.12.2/build-parallel-ABINITForum3/fallbacks/exports/include  conftest.F90 >&5
configure:14675: $? = 0
configure:14699: checking whether Fortran modules are upper-case
configure:14701: result: no
configure:14879: checking whether the LibXC library works
configure:14898: /home/temok/opt/openmpi-1.4.3/build-ifort_11.1.072/bin/mpif90 -o conftest -free -g -extend-source -vec-report0 -noaltparam -nofpscomp  -O2 -g -O2 -I/home/temok/opt/abinit-6.12.2/build-parallel-ABINITForum3/fallbacks/exports/include  -I/home/temok/opt/abinit-6.12.2/build-parallel-ABINITForum3/fallbacks/exports/include -I/home/temok/opt/abinit-6.12.2/build-parallel-ABINITForum3/fallbacks/exports/include    conftest.F90 -L/home/temok/opt/abinit-6.12.2/build-parallel-ABINITForum3/fallbacks/exports/lib -lxc -L/home/temok/intel/Compiler/11.1/072/mkl/lib/em64t -Wl,--start-group  -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -Wl,--end-group -L/home/temok/opt/abinit-6.12.2/build-parallel-ABINITForum3/fallbacks/exports/lib -lnetcdf -L/home/temok/opt/abinit-6.12.2/build-parallel-ABINITForum3/fallbacks/exports/lib -lxc  >&5
/opt/intel/fce/10.0.023/lib/libimf.so: warning: warning: feupdateenv is not implemented and will always fail
configure:14898: $? = 0
configure:14905: result: yes
configure:14919: === libXC library OK for use
configure:14921: === generating the src/libxc_names.in file
configure:14992: checking whether linear algebra libraries work
configure:15002: /home/temok/opt/openmpi-1.4.3/build-ifort_11.1.072/bin/mpif90 -o conftest -free -g -extend-source -vec-report0 -noaltparam -nofpscomp  -O2 -g -O2 -I/home/temok/opt/abinit-6.12.2/build-parallel-ABINITForum3/fallbacks/exports/include    conftest.F90 -L/home/temok/opt/abinit-6.12.2/build-parallel-ABINITForum3/fallbacks/exports/lib -lxc -L/home/temok/intel/Compiler/11.1/072/mkl/lib/em64t -Wl,--start-group  -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -Wl,--end-group -L/home/temok/opt/abinit-6.12.2/build-parallel-ABINITForum3/fallbacks/exports/lib -lnetcdf -L/home/temok/opt/abinit-6.12.2/build-parallel-ABINITForum3/fallbacks/exports/lib -lxc  >&5
/opt/intel/fce/10.0.023/lib/libimf.so: warning: warning: feupdateenv is not implemented and will always fail
configure:15002: $? = 0
configure:15009: result: yes
configure:15028: FC       = /home/temok/opt/openmpi-1.4.3/build-ifort_11.1.072/bin/mpif90
configure:15030: CPPFLAGS =  -I/home/temok/opt/abinit-6.12.2/build-parallel-ABINITForum3/fallbacks/exports/include -I/home/temok/opt/abinit-6.12.2/build-parallel-ABINITForum3/fallbacks/exports/include
configure:15032: FCFLAGS  = -free -g -extend-source -vec-report0 -noaltparam -nofpscomp  -O2 -g -O2 -I/home/temok/opt/abinit-6.12.2/build-parallel-ABINITForum3/fallbacks/exports/include
configure:15034: LDFLAGS  =  
configure:15036: LIBS     = -L/home/temok/opt/abinit-6.12.2/build-parallel-ABINITForum3/fallbacks/exports/lib -lxc -L/home/temok/intel/Compiler/11.1/072/mkl/lib/em64t -Wl,--start-group  -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -Wl,--end-group -L/home/temok/opt/abinit-6.12.2/build-parallel-ABINITForum3/fallbacks/exports/lib -lnetcdf -L/home/temok/opt/abinit-6.12.2/build-parallel-ABINITForum3/fallbacks/exports/lib -lxc 
configure:15159: creating ./config.status

## ---------------------- ##
## Running config.status. ##
## ---------------------- ##

This file was extended by AtomPAW config.status 3.0.1.3, which was
generated by GNU Autoconf 2.65.  Invocation command line was

  CONFIG_FILES    = 
  CONFIG_HEADERS  = 
  CONFIG_LINKS    = 
  CONFIG_COMMANDS = 
  $ ./config.status 

on panther-2

config.status:1149: creating Makefile
config.status:1149: creating src/Makefile
config.status:1149: creating src/pkginfo.f90
config.status:1149: creating config.h
config.status:1369: executing depfiles commands
config.status:1369: executing libtool commands

## ---------------- ##
## Cache variables. ##
## ---------------- ##

ac_cv_build=x86_64-unknown-linux-gnu
ac_cv_c_compiler_gnu=yes
ac_cv_env_ATOMPAW_LIBDIR_set=
ac_cv_env_ATOMPAW_LIBDIR_value=
ac_cv_env_CC_set=set
ac_cv_env_CC_value=/home/temok/opt/openmpi-1.4.3/build-ifort_11.1.072/bin/mpicc
ac_cv_env_CFLAGS_set=set
ac_cv_env_CFLAGS_value='-g -O2'
ac_cv_env_CPPFLAGS_set=set
ac_cv_env_CPPFLAGS_value=' -I/home/temok/opt/abinit-6.12.2/build-parallel-ABINITForum3/fallbacks/exports/include'
ac_cv_env_CPP_set=set
ac_cv_env_CPP_value='/home/temok/opt/openmpi-1.4.3/build-ifort_11.1.072/bin/mpicc -E'
ac_cv_env_FCFLAGS_set=set
ac_cv_env_FCFLAGS_value='-free -g -extend-source -vec-report0 -noaltparam -nofpscomp  -O2 -g -O2 -I/home/temok/opt/abinit-6.12.2/build-parallel-ABINITForum3/fallbacks/exports/include'
ac_cv_env_FC_set=set
ac_cv_env_FC_value=/home/temok/opt/openmpi-1.4.3/build-ifort_11.1.072/bin/mpif90
ac_cv_env_LDFLAGS_set=set
ac_cv_env_LDFLAGS_value=' '
ac_cv_env_LIBS_set=set
ac_cv_env_LIBS_value='-L/home/temok/opt/abinit-6.12.2/build-parallel-ABINITForum3/fallbacks/exports/lib -lnetcdf -L/home/temok/opt/abinit-6.12.2/build-parallel-ABINITForum3/fallbacks/exports/lib -lxc '
ac_cv_env_build_alias_set=
ac_cv_env_build_alias_value=
ac_cv_env_host_alias_set=
ac_cv_env_host_alias_value=
ac_cv_env_target_alias_set=
ac_cv_env_target_alias_value=
ac_cv_fc_compiler_gnu=no
ac_cv_fc_srcext_F90=none
ac_cv_header_dlfcn_h=yes
ac_cv_header_inttypes_h=yes
ac_cv_header_memory_h=yes
ac_cv_header_stdc=yes
ac_cv_header_stdint_h=yes
ac_cv_header_stdlib_h=yes
ac_cv_header_string_h=yes
ac_cv_header_strings_h=yes
ac_cv_header_sys_stat_h=yes
ac_cv_header_sys_types_h=yes
ac_cv_header_unistd_h=yes
ac_cv_host=x86_64-unknown-linux-gnu
ac_cv_objext=o
ac_cv_path_EGREP='/bin/grep -E'
ac_cv_path_FGREP='/bin/grep -F'
ac_cv_path_GREP=/bin/grep
ac_cv_path_SED=/bin/sed
ac_cv_path_install='/usr/bin/install -c'
ac_cv_path_mkdir=/bin/mkdir
ac_cv_prog_AWK=gawk
ac_cv_prog_CPP='/home/temok/opt/openmpi-1.4.3/build-ifort_11.1.072/bin/mpicc -E'
ac_cv_prog_DVIPDF=dvipdf
ac_cv_prog_LATEX=latex
ac_cv_prog_PERL=perl
ac_cv_prog_ac_ct_AR=ar
ac_cv_prog_ac_ct_CC=/home/temok/opt/openmpi-1.4.3/build-ifort_11.1.072/bin/mpicc
ac_cv_prog_ac_ct_OBJDUMP=objdump
ac_cv_prog_ac_ct_RANLIB=ranlib
ac_cv_prog_ac_ct_STRIP=strip
ac_cv_prog_cc_c89=
ac_cv_prog_cc_g=yes
ac_cv_prog_fc_g=yes
ac_cv_prog_make_make_set=yes
ac_cv_target=x86_64-unknown-linux-gnu
am_cv_CC_dependencies_compiler_type=none
ax_cv_f90_modext=mod
lt_cv_deplibs_check_method=pass_all
lt_cv_file_magic_cmd='$MAGIC_CMD'
lt_cv_file_magic_test_file=
lt_cv_ld_reload_flag=-r
lt_cv_nm_interface='BSD nm'
lt_cv_objdir=.libs
lt_cv_path_LD=/usr/bin/ld
lt_cv_path_NM='/usr/bin/nm -B'
lt_cv_prog_compiler_c_o=yes
lt_cv_prog_compiler_c_o_FC=yes
lt_cv_prog_compiler_pic_works=yes
lt_cv_prog_compiler_rtti_exceptions=no
lt_cv_prog_compiler_static_works=no
lt_cv_prog_compiler_static_works_FC=yes
lt_cv_prog_gnu_ld=yes
lt_cv_sys_global_symbol_pipe='sed -n -e '\''s/^.*[    ]\([ABCDGIRSTW][ABCDGIRSTW]*\)[    ][    ]*\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2 \2/p'\'''
lt_cv_sys_global_symbol_to_c_name_address='sed -n -e '\''s/^: \([^ ]*\) $/  {\"\1\", (void *) 0},/p'\'' -e '\''s/^[ABCDGIRSTW]* \([^ ]*\) \([^ ]*\)$/  {"\2", (void *) \&\2},/p'\'''
lt_cv_sys_global_symbol_to_c_name_address_lib_prefix='sed -n -e '\''s/^: \([^ ]*\) $/  {\"\1\", (void *) 0},/p'\'' -e '\''s/^[ABCDGIRSTW]* \([^ ]*\) \(lib[^ ]*\)$/  {"\2", (void *) \&\2},/p'\'' -e '\''s/^[ABCDGIRSTW]* \([^ ]*\) \([^ ]*\)$/  {"lib\2", (void *) \&\2},/p'\'''
lt_cv_sys_global_symbol_to_cdecl='sed -n -e '\''s/^T .* \(.*\)$/extern int \1();/p'\'' -e '\''s/^[ABCDGIRSTW]* .* \(.*\)$/extern char \1;/p'\'''
lt_cv_sys_max_cmd_len=98304

## ----------------- ##
## Output variables. ##
## ----------------- ##

ACLOCAL='${SHELL} /home/temok/opt/abinit-6.12.2/build-parallel-ABINITForum3/fallbacks/sources/atompaw-3.0.1.3/config/gnu/missing --run aclocal-1.11'
AMDEPBACKSLASH='\'
AMDEP_FALSE='#'
AMDEP_TRUE=''
AMTAR='${SHELL} /home/temok/opt/abinit-6.12.2/build-parallel-ABINITForum3/fallbacks/sources/atompaw-3.0.1.3/config/gnu/missing --run tar'
AR='ar'
ATOMPAW_LIBDIR=''
ATP_FCOPTS='-O2'
ATP_LDOPTS='-O2 -Vaxlib'
ATP_LIBS=''
AUTOCONF='${SHELL} /home/temok/opt/abinit-6.12.2/build-parallel-ABINITForum3/fallbacks/sources/atompaw-3.0.1.3/config/gnu/missing --run autoconf'
AUTOHEADER='${SHELL} /home/temok/opt/abinit-6.12.2/build-parallel-ABINITForum3/fallbacks/sources/atompaw-3.0.1.3/config/gnu/missing --run autoheader'
AUTOMAKE='${SHELL} /home/temok/opt/abinit-6.12.2/build-parallel-ABINITForum3/fallbacks/sources/atompaw-3.0.1.3/config/gnu/missing --run automake-1.11'
AWK='gawk'
CC='/home/temok/opt/openmpi-1.4.3/build-ifort_11.1.072/bin/mpicc'
CCDEPMODE='depmode=none'
CFLAGS='-g -O2'
CPP='/home/temok/opt/openmpi-1.4.3/build-ifort_11.1.072/bin/mpicc -E'
CPPFLAGS=' -I/home/temok/opt/abinit-6.12.2/build-parallel-ABINITForum3/fallbacks/exports/include -I/home/temok/opt/abinit-6.12.2/build-parallel-ABINITForum3/fallbacks/exports/include'
CYGPATH_W='echo'
DEFS='-DHAVE_CONFIG_H'
DEPDIR='.deps'
DSYMUTIL=''
DUMPBIN=''
DVIPDF='dvipdf'
ECHO_C=''
ECHO_N='-n'
ECHO_T=''
EGREP='/bin/grep -E'
EXEEXT=''
FC='/home/temok/opt/openmpi-1.4.3/build-ifort_11.1.072/bin/mpif90'
FCFLAGS='-free -g -extend-source -vec-report0 -noaltparam -nofpscomp  -O2 -g -O2 -I/home/temok/opt/abinit-6.12.2/build-parallel-ABINITForum3/fallbacks/exports/include'
FCFLAGS_F90=''
FGREP='/bin/grep -F'
GREP='/bin/grep'
INSTALL_DATA='${INSTALL} -m 644'
INSTALL_PROGRAM='${INSTALL}'
INSTALL_SCRIPT='${INSTALL}'
INSTALL_STRIP_PROGRAM='$(install_sh) -c -s'
LATEX='latex'
LD='/usr/bin/ld -m elf_x86_64'
LDFLAGS=' '
LIBOBJS=''
LIBS='-L/home/temok/opt/abinit-6.12.2/build-parallel-ABINITForum3/fallbacks/exports/lib -lxc -L/home/temok/intel/Compiler/11.1/072/mkl/lib/em64t -Wl,--start-group  -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -Wl,--end-group -L/home/temok/opt/abinit-6.12.2/build-parallel-ABINITForum3/fallbacks/exports/lib -lnetcdf -L/home/temok/opt/abinit-6.12.2/build-parallel-ABINITForum3/fallbacks/exports/lib -lxc '
LIBTOOL='$(SHELL) $(top_builddir)/libtool'
LIPO=''
LN_S='ln -s'
LTLIBOBJS=''
LTOBJEXT='lo'
MAKEINFO='${SHELL} /home/temok/opt/abinit-6.12.2/build-parallel-ABINITForum3/fallbacks/sources/atompaw-3.0.1.3/config/gnu/missing --run makeinfo'
MKDIR_P='/bin/mkdir -p'
MODEXT='mod'
NM='/usr/bin/nm -B'
NMEDIT=''
OBJDUMP='objdump'
OBJEXT='o'
OTOOL64=''
OTOOL=''
PACKAGE='atompaw'
PACKAGE_BUGREPORT='natalie@wfu.edu,marc.torrent@cea.fr'
PACKAGE_NAME='AtomPAW'
PACKAGE_STRING='AtomPAW 3.0.1.3'
PACKAGE_TARNAME='atompaw'
PACKAGE_URL=''
PACKAGE_VERSION='3.0.1.3'
PATH_SEPARATOR=':'
PERL='perl'
RANLIB='ranlib'
SED='/bin/sed'
SET_MAKE=''
SHELL='/bin/sh'
STRIP='strip'
VERSION='3.0.1.3'
ac_ct_CC='/home/temok/opt/openmpi-1.4.3/build-ifort_11.1.072/bin/mpicc'
ac_ct_DUMPBIN=''
ac_ct_FC=''
am__EXEEXT_FALSE=''
am__EXEEXT_TRUE='#'
am__fastdepCC_FALSE=''
am__fastdepCC_TRUE='#'
am__include='include'
am__isrc=''
am__leading_dot='.'
am__quote=''
am__tar='${AMTAR} chof - "$$tardir"'
am__untar='${AMTAR} xf -'
atp_fc_path=''
atp_fc_vendor='intel'
atp_fc_version='11.1'
atp_fc_wrap='no'
bindir='${exec_prefix}/bin'
build='x86_64-unknown-linux-gnu'
build_alias=''
build_cpu='x86_64'
build_os='linux-gnu'
build_vendor='unknown'
datadir='${datarootdir}'
datarootdir='${prefix}/share'
docdir='${datarootdir}/doc/${PACKAGE_TARNAME}'
dvidir='${docdir}'
exec_prefix='${prefix}'
host='x86_64-unknown-linux-gnu'
host_alias=''
host_cpu='x86_64'
host_os='linux-gnu'
host_vendor='unknown'
htmldir='${docdir}'
includedir='${prefix}/include'
infodir='${datarootdir}/info'
install_sh='${SHELL} /home/temok/opt/abinit-6.12.2/build-parallel-ABINITForum3/fallbacks/sources/atompaw-3.0.1.3/config/gnu/install-sh'
libdir='${exec_prefix}/lib'
libexecdir='${exec_prefix}/libexec'
localedir='${datarootdir}/locale'
localstatedir='${prefix}/var'
lt_ECHO='echo'
mandir='${datarootdir}/man'
mkdir_p='/bin/mkdir -p'
oldincludedir='/usr/include'
pdfdir='${docdir}'
prefix='/home/temok/opt/abinit-6.12.2/build-parallel-ABINITForum3/fallbacks/exports'
program_transform_name='s&$$&-abinit&'
psdir='${docdir}'
sbindir='${exec_prefix}/sbin'
sharedstatedir='${prefix}/com'
sysconfdir='${prefix}/etc'
target='x86_64-unknown-linux-gnu'
target_alias=''
target_cpu='x86_64'
target_os='linux-gnu'
target_vendor='unknown'

## ----------- ##
## confdefs.h. ##
## ----------- ##

/* confdefs.h */
#define PACKAGE_NAME "AtomPAW"
#define PACKAGE_TARNAME "atompaw"
#define PACKAGE_VERSION "3.0.1.3"
#define PACKAGE_STRING "AtomPAW 3.0.1.3"
#define PACKAGE_BUGREPORT "natalie@wfu.edu,marc.torrent@cea.fr"
#define PACKAGE_URL ""
#define PACKAGE "atompaw"
#define VERSION "3.0.1.3"
#define STDC_HEADERS 1
#define HAVE_SYS_TYPES_H 1
#define HAVE_SYS_STAT_H 1
#define HAVE_STDLIB_H 1
#define HAVE_STRING_H 1
#define HAVE_MEMORY_H 1
#define HAVE_STRINGS_H 1
#define HAVE_INTTYPES_H 1
#define HAVE_STDINT_H 1
#define HAVE_UNISTD_H 1
#define HAVE_DLFCN_H 1
#define LT_OBJDIR ".libs/"
#define FC_INTEL 1
#define HAVE_LIBXC 1

configure: exit 0

2) you have a problem with wannier90, then we need the config.log found in
abinit-6.12.2/build-parallel-ABINITForum/fallbacks/sources/wannier90-1.2.0.1 :

Such config.log is attached in this reply. Please note that such log file corresponds for the case ifort 12.1 + openmpi-1.4.5, which I have desisted under your suggestion

Thanks,
Temok

Attachments

config.log: (11.44 KiB) Downloaded 376 times

jbeuken: Posts: 365; Joined: Tue Aug 18, 2009 9:24 pm; Contact:
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Re: abinit-6.12.1. Compiler error at ATOMPAW

Quote

Post by jbeuken » Tue Mar 27, 2012 7:51 pm

Hi Temok,

Such config.log is attached in this reply. Please note that such log file corresponds for the case ifort 12.1 + openmpi-1.4.5, which I have desisted under your suggestion

with this config.log, it's simple to find the problem...

Code: Select all

...
./conftest: error while loading shared libraries: libmkl_intel_lp64.so: cannot open shared object file: No such file or directory
...

don't forget to set the LD_LIBRARY_PATH and/or LIBRARY_PATH in your environment

for example, with the intel11.1 / openmpi, my environment is set by :

Code: Select all

source /opt/intel/Compiler/11.1/073/bin/ifortvars.sh intel64
source /opt/intel/Compiler/11.1/073/bin/iccvars.sh intel64
export PATH=/usr/local/openmpi_intel/bin:$PATH
export LD_LIBRARY_PATH=/usr/local/openmpi_intel/lib:$LD_LIBRARY_PATH

and the environment has , among other things, :

Code: Select all

MKLROOT=/opt/intel/Compiler/11.1/073/mkl

LD_LIBRARY_PATH=/usr/local/openmpi_intel/lib:/opt/intel/Compiler/11.1/073/lib/intel64:/opt/intel/Compiler/11.1/073/ipp/em64t/sharedlib:/opt/intel/Compiler/11.1/073/mkl/lib/em64t:/opt/intel/Compiler/11.1/073/tbb/intel64/cc4.1.0_libc2.4_kernel2.6.16.21/lib:/opt/intel/Compiler/11.1/073/lib/intel64:/opt/intel/Compiler/11.1/073/ipp/em64t/sharedlib:/opt/intel/Compiler/11.1/073/mkl/lib/em64t:/opt/intel/Compiler/11.1/073/tbb/intel64/cc4.1.0_libc2.4_kernel2.6.16.21/lib

LIBRARY_PATH=/opt/intel/Compiler/11.1/073/lib/intel64:/opt/intel/Compiler/11.1/073/ipp/em64t/lib:/opt/intel/Compiler/11.1/073/mkl/lib/em64t:/opt/intel/Compiler/11.1/073/tbb/intel64/cc4.1.0_libc2.4_kernel2.6.16.21/lib:/opt/intel/Compiler/11.1/073/lib/intel64:/opt/intel/Compiler/11.1/073/ipp/em64t/lib:/opt/intel/Compiler/11.1/073/mkl/lib/em64t:/opt/intel/Compiler/11.1/073/tbb/intel64/cc4.1.0_libc2.4_kernel2.6.16.21/lib

jmb

------
Jean-Michel Beuken
Computer Scientist

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