input file for doped ZrO2 2*2*2 supercell

Total energy, geometry optimization, DFT+U, spin....

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amir
Posts: 19
Joined: Fri Oct 24, 2014 8:44 pm

input file for doped ZrO2 2*2*2 supercell

Post by amir » Tue Apr 21, 2015 11:30 pm

Hi,

I want to calculate total energy of a 2*2*2 supercell of doped ZrO2. Could someone please check the input file? It takes about one day to do the calculations, I am wondering if it is normal or there is any way that I can make it faster. (To make the post short I removed the coordinates of atoms)

ecut 28
pawecutdg 62
ecutsm 0.5

acell 3*10.056489654 angstrom
rprim
1 0 0
0 1 0
0 0 1

nstep 40
toldfe 1.0d-6

#Definition of the k-point grids
ngkpt 2 2 2
nshiftk 4
shiftk 0.5 0.5 0.5 # These shifts will be the same for all grids
0.5 0.0 0.0
0.0 0.5 0.0
0.0 0.0 0.5

diemac 4
chkprim 0

getwfk -1

ntypat 3
znucl 40 8 39
maxnsym 8000

natom 95 (not 96 because we have one vacancy)
typat 2*3 30*1 63*2

#NN/3NN

xred

0.5 0.25 0.25 #2NN
0.5 0.75 0.25 #1NN
.
.
.

Thanks a lot,
Amir

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jzwanzig
Posts: 504
Joined: Mon Aug 17, 2009 9:25 am

Re: input file for doped ZrO2 2*2*2 supercell

Post by jzwanzig » Mon May 04, 2015 1:45 pm

a 95 atom cell with no symmetry is simply a large calculation in the DFT world. you can speed it up by running on many cores in parallel and taking advantage of parallelization over k points, bands, and fft planes as described in the documentation for paral_kgb and autoparal key words.
Josef W. Zwanziger
Professor, Department of Chemistry
Canada Research Chair in NMR Studies of Materials
Dalhousie University
Halifax, NS B3H 4J3 Canada
jzwanzig@gmail.com

amir
Posts: 19
Joined: Fri Oct 24, 2014 8:44 pm

Re: input file for doped ZrO2 2*2*2 supercell

Post by amir » Tue May 12, 2015 7:18 am

Thank you very much. I just wanted to make sure that I am doing everything right and my input file contains all the necessary variables.

I ran the simulation with norm conserving pseudopotential and it took less than 3 hours. Does PAW really take that longer?

Mohamedy002
Posts: 9
Joined: Wed Aug 10, 2016 10:56 am

Re: input file for doped ZrO2 2*2*2 supercell

Post by Mohamedy002 » Tue Aug 30, 2016 3:17 pm

Hi Amir,

Please I would like to know why you choose the number of atoms like that

30 for Zr
63 for O
2 for Vacancies

I knew you have 95 atoms. BTW each Zr is bonded with 2 oxygen atoms so if we have 30 Zr then we are going to have 60 oxygen atoms and 1 of the 60 is going to be a vacancy but total also will not be 95 atoms.

Why you chose your super cell to consist of 95 atoms?

shalom
Posts: 12
Joined: Wed Mar 01, 2017 5:00 pm

Re: input file for doped ZrO2 2*2*2 supercell

Post by shalom » Fri May 26, 2017 12:36 am

Hi, Abinit users...
I want to know:
With abinit How to write a input file of entrance for the thiophen C4H4S for the calculation of its structure of band ?
thank you!

amir
Posts: 19
Joined: Fri Oct 24, 2014 8:44 pm

Re: input file for doped ZrO2 2*2*2 supercell

Post by amir » Wed Jun 07, 2017 6:05 am

Mohamed, Cubic zirconia has fluorite structure, O has coordination number of 4 and Zr has coordination number of 8.

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