construct an input file

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Bernard NAOUSSI
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construct an input file

Post by Bernard NAOUSSI » Sat Dec 18, 2010 10:04 am

Dear all

I need to study the convergence in energy cutoff (ecut) , lattice parameter (acell) and k-points and compute the band structure for GaN and AlN wurtzite phase.
but I can't build the corresponding input files. Especially for the wurtzite phase. I need some help to build these Input files.

Thank for advance

Regards

Bernard Naoussi
Bernard NAOUSSI
PhD. Student
Laboratory of Materials Science
University of Yaounde 1 (Cameroon)
bernard_naoussi@yahoo.fr

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jzwanzig
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Re: construct an input file

Post by jzwanzig » Sat Dec 18, 2010 12:35 pm

Can you be more specific? Do you at least have starting structures (.cif files or equivalent)?
Josef W. Zwanziger
Professor, Department of Chemistry
Canada Research Chair in NMR Studies of Materials
Dalhousie University
Halifax, NS B3H 4J3 Canada
jzwanzig@gmail.com

Bernard NAOUSSI
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Joined: Mon Dec 07, 2009 10:05 am

Re: construct an input file

Post by Bernard NAOUSSI » Sun Dec 19, 2010 9:09 am

Thank Professor for your reaction

I try to create input files for the study of convergence in ecut (Energy cutoff), acell and k point and calculating the band structure of GaN and AlN . GaN and AlN are in wurtzite phase (hexagonal).


I need some help to create these Input files.

Regards
Bernard NAOUSSI
PhD. Student
Laboratory of Materials Science
University of Yaounde 1 (Cameroon)
bernard_naoussi@yahoo.fr

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jzwanzig
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Re: construct an input file

Post by jzwanzig » Sun Dec 19, 2010 1:50 pm

Well, the tutorials explain in detail how to study convergence and optimize structures, have you done the tutorial lessons? With all respect, you really need to post more specific questions, as you know there are many input variables for abinit and it's not clear what it is you are having trouble with.
Josef W. Zwanziger
Professor, Department of Chemistry
Canada Research Chair in NMR Studies of Materials
Dalhousie University
Halifax, NS B3H 4J3 Canada
jzwanzig@gmail.com

Bernard NAOUSSI
Posts: 24
Joined: Mon Dec 07, 2009 10:05 am

Re: construct an input file

Post by Bernard NAOUSSI » Sun Dec 19, 2010 8:46 pm

Thank Professor.

My problem is the wurtzite phase. I do all the tutorial (lesson 1, 2, 3, 4) but is much more the cubic phase which is processed and treated me I need the case of a wurtzite phase.


Regards


bernard_naoussi@yahoo.fr
Bernard NAOUSSI
PhD. Student
Laboratory of Materials Science
University of Yaounde 1 (Cameroon)
bernard_naoussi@yahoo.fr

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jzwanzig
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Re: construct an input file

Post by jzwanzig » Mon Dec 20, 2010 2:14 am

What structure are you using? Do you have a .cif or related file of structural information?
Josef W. Zwanziger
Professor, Department of Chemistry
Canada Research Chair in NMR Studies of Materials
Dalhousie University
Halifax, NS B3H 4J3 Canada
jzwanzig@gmail.com

Bernard NAOUSSI
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Joined: Mon Dec 07, 2009 10:05 am

Re: construct an input file

Post by Bernard NAOUSSI » Mon Dec 20, 2010 9:01 am

Thank professor

I study the quatum wells GaN/AlN in wurtzite phase. I try to compute these properties in GaN and AlN. GaN and AlN are in the

wurtzite phase.

Thank for advance

Regards
Bernard NAOUSSI
PhD. Student
Laboratory of Materials Science
University of Yaounde 1 (Cameroon)
bernard_naoussi@yahoo.fr

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jzwanzig
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Re: construct an input file

Post by jzwanzig » Mon Dec 20, 2010 12:09 pm

Here's an input file for actual wurtzite (ZnS) to get you started.

ecut 15
pawecutdg 30

prtgeo 2

toldff 1.0D-6

acell 3.8227 3.8227 6.2607 angstrom
angdeg 90. 90. 120.
spgroup 186

kptopt 1
kptrlen 60

ntypat 2
znucl 30 16

natom 4
natrd 2
typat 1 2

xred
1/3 2/3 0
1/3 2/3 0.3748

nstep 50
iscf 17
diemac 2.4
Josef W. Zwanziger
Professor, Department of Chemistry
Canada Research Chair in NMR Studies of Materials
Dalhousie University
Halifax, NS B3H 4J3 Canada
jzwanzig@gmail.com

Bernard NAOUSSI
Posts: 24
Joined: Mon Dec 07, 2009 10:05 am

Re: construct an input file

Post by Bernard NAOUSSI » Mon Dec 20, 2010 3:44 pm

Thank Professor

Can I use this input files to study the convergence in "ecut", "acell" , "k-point" and compute the band structure of GaN and AlN in wurtzite phase?

Thank for advance

Regards

bernard_naoussi@yahoo.fr
Bernard NAOUSSI
PhD. Student
Laboratory of Materials Science
University of Yaounde 1 (Cameroon)
bernard_naoussi@yahoo.fr

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jzwanzig
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Re: construct an input file

Post by jzwanzig » Mon Dec 20, 2010 4:27 pm

The file I posted is for wurtzite, which is ZnS. For GaN in the wurtzite structure, you will have to modify acell and xred to match the GaN values, and znucl to match Ga and N.
Josef W. Zwanziger
Professor, Department of Chemistry
Canada Research Chair in NMR Studies of Materials
Dalhousie University
Halifax, NS B3H 4J3 Canada
jzwanzig@gmail.com

Bernard NAOUSSI
Posts: 24
Joined: Mon Dec 07, 2009 10:05 am

Re: construct an input file

Post by Bernard NAOUSSI » Wed Dec 22, 2010 4:55 pm

Hello Professor

Can I have the same data for recent Zinc-blende structure?

Thank for advance

Regards


bernard_naoussi@yahoo.fr
Bernard NAOUSSI
PhD. Student
Laboratory of Materials Science
University of Yaounde 1 (Cameroon)
bernard_naoussi@yahoo.fr

Bernard NAOUSSI
Posts: 24
Joined: Mon Dec 07, 2009 10:05 am

Re: construct an input file

Post by Bernard NAOUSSI » Thu Dec 23, 2010 12:21 pm

Dear all

Now I want to start my study in Zinc blende structure : GaN and AlN (convergence in ecut, acell and kpoint). Can you help me to construct my Inputs files?

Thank for Advance.

Regards
Bernard NAOUSSI
PhD. Student
Laboratory of Materials Science
University of Yaounde 1 (Cameroon)
bernard_naoussi@yahoo.fr

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jzwanzig
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Re: construct an input file

Post by jzwanzig » Thu Dec 23, 2010 2:29 pm

see test V2/case 07. Surely you can be working some of this stuff out for yourself.
Josef W. Zwanziger
Professor, Department of Chemistry
Canada Research Chair in NMR Studies of Materials
Dalhousie University
Halifax, NS B3H 4J3 Canada
jzwanzig@gmail.com

Bernard NAOUSSI
Posts: 24
Joined: Mon Dec 07, 2009 10:05 am

Re: construct an input file

Post by Bernard NAOUSSI » Fri Dec 24, 2010 9:38 am

Bernard NAOUSSI
PhD. Student
Laboratory of Materials Science
University of Yaounde 1 (Cameroon)
bernard_naoussi@yahoo.fr

Bernard NAOUSSI
Posts: 24
Joined: Mon Dec 07, 2009 10:05 am

Re: construct an input file

Post by Bernard NAOUSSI » Wed Dec 29, 2010 9:46 am

Dear all

I need to have the xred of GaN and AlN please. I have a problem to compute the convergence in acell and ecut of these materials. Can I have in abinit/test/v1 or v2 or v3 or v4 some file like v2/t07 for GaAs where i can see the Input data of GaN and AlN wurtzite?

Thank for advance

Best Regards

bernard_naoussi@yahoo.fr
Bernard NAOUSSI
PhD. Student
Laboratory of Materials Science
University of Yaounde 1 (Cameroon)
bernard_naoussi@yahoo.fr

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Alain_Jacques
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Re: construct an input file

Post by Alain_Jacques » Wed Dec 29, 2010 12:02 pm

Look for the cif on http://www.crystallography.net - xred coords are at the end of the file :roll:

Alain

Bernard NAOUSSI
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Re: construct an input file

Post by Bernard NAOUSSI » Wed Dec 29, 2010 3:28 pm

Thank Alain

I don't see the file in http://www.crystallography.net . please can you specified me the link to get this file please in this web site?

Thank for advance

Best Regards
Bernard NAOUSSI
PhD. Student
Laboratory of Materials Science
University of Yaounde 1 (Cameroon)
bernard_naoussi@yahoo.fr

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Alain_Jacques
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Re: construct an input file

Post by Alain_Jacques » Thu Dec 30, 2010 12:32 am


Bernard NAOUSSI
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Re: construct an input file

Post by Bernard NAOUSSI » Thu Dec 30, 2010 1:39 pm

Thank Alain

The CIF files have the xred of Ga, Al and N but I need the xred oh GaN and AlN in wurtzite phase please.

If it's possible, send me the xred of GaN and AlN in wurtzite phase. I need also the syntax of "jdtset" variables to study de convergence of acell and ecut. "udtset" can compute only max 9 values.

Thank for advance.


Best Regards.

Bernard_naoussi@yahoo.fr
Bernard NAOUSSI
PhD. Student
Laboratory of Materials Science
University of Yaounde 1 (Cameroon)
bernard_naoussi@yahoo.fr

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Alain_Jacques
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Location: Université catholique de Louvain - Belgium

Re: construct an input file

Post by Alain_Jacques » Thu Dec 30, 2010 5:32 pm

:shock: I give up

Bernard NAOUSSI
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Joined: Mon Dec 07, 2009 10:05 am

HAPPY NEW YEAR

Post by Bernard NAOUSSI » Sun Jan 02, 2011 2:18 pm

Happy New Year to all forum members
Bernard NAOUSSI
PhD. Student
Laboratory of Materials Science
University of Yaounde 1 (Cameroon)
bernard_naoussi@yahoo.fr

Bernard NAOUSSI
Posts: 24
Joined: Mon Dec 07, 2009 10:05 am

INPUT FILE OF VANADIUM DIOXIDE (VO2)

Post by Bernard NAOUSSI » Tue Apr 12, 2011 4:49 pm

Dear All

I want to compute the electronic structure of VO2 (VANADIUM DIOXIDE). Please I need some help to create an input file for this computation.

Thanks for advance

Bernard NAOUSSI
Bernard NAOUSSI
PhD. Student
Laboratory of Materials Science
University of Yaounde 1 (Cameroon)
bernard_naoussi@yahoo.fr

BAMGBOSE, M. K.
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Location: Department of Physics, Federal University of Agriculture Abeokuta, Nigeria.

Re: construct an input file

Post by BAMGBOSE, M. K. » Tue Feb 26, 2013 8:28 pm

Dear Prof jzwanzig,
I need your assistance on correction to this input file for doped CaB6. i want to determined optimized lattice parameter and the structure of the doped system.


#Optimization of the lattice parameters
optcell 1
ionmov 3
ntime 10
dilatmx 1.5
ecutsm 0.5
ecut 35
nsym 0
occopt 1
mkmem 0
#Definition of the k-point grids
kptopt 1 # Option for the automatic generation of k points, taking
# into account the symmetry
nshiftk 1
shiftk 0.5 0.5 0.5
ngkpt 4 4 4
getwfk -1

chkprim 0

#Definition of the SCF procedure
#nstep 300
toldfe 1.0d-8
diemac 9.0


#COMMON INPUT DATA###########################################################
#alchemical input
npsp 3
ntypalch 1
mixalch 0.95 0.05
#
# CaB6 lattice structure
ntypat 2
znucl 5 20 56
natom 7
typat 1 2 2 2 2 2 2

#Definition of the unit cell
acell 3*7.6
#angdeg 90 90 90
#spgroup 221

# Atomic positions
xred 0.00 0.00 0.00 #Ca1
0.50 0.50 0.20 #B2
0.50 0.50 -0.20 #B2
0.50 0.20 0.50 #B2
0.50 -0.20 0.50 #B2
0.20 0.50 0.50 #B2
0.80 0.50 0.50 #B2


ixc 11
timopt 2


Thanks alot prof
M. K. Bamgbose (PhD),
Condensed Matter Physics.

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