Hello,
I compiled abinit 8.10.3 successfully using the following command:
../../../srcdir/abinit/8.10.3/configure --prefix=/uufs/chpc.utah.edu/sys/installdir/abinit/8.10.3 \
--enable-gpu --enable-mpi \
--enable-openmp --enable-stdin --enable-xml CPP="gcc -E" CXXCPP="g++ -E" \
--with-gpu-prefix=/uufs/chpc.utah.edu/sys/installdir/cuda/10.1.168 --with-linalg-flavor="netlib+magma" \
--with-fft-flavor=fftw3-mkl --with-fft-libs="-lmkl_intel_ilp64 -lmkl_intel_thread -lmkl_core "
make - j 24
make install
When I invoke make check I get the following type of error:
make check-local
make[3]: Entering directory `/uufs/chpc.utah.edu/sys/builddir/abinit/8.10.3/tests'
[ -f "runtests.py" ] && ./runtests.py fast -o1 --no-colors --no-logo || ../../../../srcdir/abinit/8.10.3/tests/runtests.py fast -o1 --no-colors --no-logo --with-pickle=0
Running on notch004 -- system Linux -- ncpus 64 -- Python 2.7.5 -- runtests.py-0.6.0
Regenerating database...
Test_suite directory already exists. Files will be removed
Running 26 test(s) with MPI_nprocs=1, OMP_nthreads=1, py_nthreads=1...
[TIP] runtests.py is using 1 CPUs but your architecture has 64 CPUs
You may want to use python threads to speed up the execution
Use `runtests -jNUM` to run with NUM threads
Command /uufs/chpc.utah.edu/sys/builddir/abinit/8.10.3/src/98_main/abinit < /uufs/chpc.utah.edu/sys/builddir/abinit/8.10.3/tests/Test_suite/fast_t00/t00.stdin > /uufs/chpc.utah.edu/sys/builddir/abinit/8.10.3/tests/Test_suite/fast_t00/t00.stdout 2> /uufs/chpc.utah.edu/sys/builddir/abinit/8.10.3/tests/Test_suite/fast_t00/t00.stderr
returned exit_code: 24
[fast][t00][np=1]: fldiff.pl fatal error:
Unable to open input file /uufs/chpc.utah.edu/sys/builddir/abinit/8.10.3/tests/Test_suite/fast_t00/t00.out [file=t00.out]
[fast][t00][np=1]Test was not expected to fail but subprocesses returned 24
forrtl: severe (24): end-of-file during read, unit 5, file /proc/247195/fd/0
Image PC Routine Line Source
abinit 0000000008BB30F6 Unknown Unknown Unknown
abinit 0000000008BE0B00 Unknown Unknown Unknown
abinit 00000000062BD1C7 Unknown Unknown Unknown
abinit 000000000040F915 Unknown Unknown Unknown
abinit 000000000040F492 Unknown Unknown Unknown
libc-2.17.so 00002AD64B00E3D5 __libc_start_main Unknown Unknown
abinit 000000000040F399 Unknown Unknown Unknown
No YAML Error found in [fast][t00][np=1]
Command /uufs/chpc.utah.edu/sys/builddir/abinit/8.10.3/src/98_main/abinit < /uufs/chpc.utah.edu/sys/builddir/abinit/8.10.3/tests/Test_suite/fast_t01/t01.stdin > /uufs/chpc.utah.edu/sys/builddir/abinit/8.10.3/tests/Test_suite/fast_t01/t01.stdout 2> /uufs/chpc.utah.edu/sys/builddir/abinit/8.10.3/tests/Test_suite/fast_t01/t01.stderr
returned exit_code: 24
From the error message I infer that the code crashes because It can't read a file.
Any suggestions?
Thanks,
Wim
Failing make check
Moderators: fgoudreault, mcote
Forum rules
Please have a look at ~abinit/doc/config/build-config.ac in the source package for detailed and up-to-date information about the configuration of Abinit 8 builds.
For a video explanation on how to build Abinit 7.x for Linux, please go to: http://www.youtube.com/watch?v=DppLQ-KQA68.
IMPORTANT: when an answer solves your problem, please check the little green V-like button on its upper-right corner to accept it.
Please have a look at ~abinit/doc/config/build-config.ac in the source package for detailed and up-to-date information about the configuration of Abinit 8 builds.
For a video explanation on how to build Abinit 7.x for Linux, please go to: http://www.youtube.com/watch?v=DppLQ-KQA68.
IMPORTANT: when an answer solves your problem, please check the little green V-like button on its upper-right corner to accept it.
Re: Failing make check
Dear Wim,
And if you go in the test folder and run the python script yourself, does it works (./runtests.py ; please look at the different options by typing ./runtests.py -h)
Best wishes,
Eric
And if you go in the test folder and run the python script yourself, does it works (./runtests.py ; please look at the different options by typing ./runtests.py -h)
Best wishes,
Eric