Index

A

A2f (class in abipy.eph.a2f) a2f_qcoarse() (abipy.eph.a2f.A2fFile method) a2f_qintp() (abipy.eph.a2f.A2fFile method) A2fFile (class in abipy.eph.a2f) A2fFilePanel (class in abipy.panels.a2f) A2fReader (class in abipy.eph.a2f) A2fRobot (class in abipy.eph.a2f) A2Ftr (class in abipy.eph.a2f) a2ftr_qcoarse() (abipy.eph.a2f.A2fFile method) a2ftr_qintp() (abipy.eph.a2f.A2fFile method) A_hw() (abipy.lumi.lineshape.Lineshape method) a_kn() (abipy.eph.varpeq.Polaron method) abi_extensions() (in module abipy.flowtk.utils) abi_primitive() (abipy.core.structure.Structure method) abi_sanitize (abipy.panels.structure.InputFileGenerator attribute) abi_sanitize() (abipy.core.structure.Structure method) abi_spacegroup (abipy.core.structure.Structure property) abi_splitext() (in module abipy.flowtk.utils) abi_string (abipy.core.structure.Structure property) AbiAbstractInput (class in abipy.abio.inputs) abicheck() (in module abipy.abilab) abifile_subclass_from_filename() (in module abipy.abilab) abifiles (abipy.abio.robots.Robot property) abiget_autoparal_pconfs() (abipy.abio.inputs.AbinitInput method) abiget_dims_spginfo() (abipy.abio.inputs.AbinitInput method) abiget_dryrun_task() (abipy.abio.inputs.AbinitInput method) abiget_ibz() (abipy.abio.inputs.AbinitInput method) abiget_irred_ddeperts() (abipy.abio.inputs.AbinitInput method) abiget_irred_dteperts() (abipy.abio.inputs.AbinitInput method) abiget_irred_phperts() (abipy.abio.inputs.AbinitInput method) abiget_irred_strainperts() (abipy.abio.inputs.AbinitInput method) abiget_scr_ibz() (abipy.abio.inputs.AbinitInput method) abiget_spacegroup() (abipy.abio.inputs.AbinitInput method) abiget_spginfo() (abipy.core.structure.Structure method) abinb_mkstemp() (in module abipy.core.globals) abinit_build() (abipy.flowtk.tasks.TaskManager method) abinit_help() (in module abipy.abio.abivars_db) abinit_to_phonopy() (in module abipy.dfpt.converters) abinit_version() (abipy.core.mixins.AbinitNcFile method) AbinitBuild (class in abipy.flowtk.tasks) AbinitInput (class in abipy.abio.inputs) AbinitInputDecorator (class in abipy.abio.decorators) AbinitInputError AbinitInputFile (class in abipy.abio.abivars) AbinitInputParser (class in abipy.abio.abivars) AbinitLogFile (class in abipy.abio.outputs) AbinitNcFile (class in abipy.core.mixins) AbinitOutputFile (class in abipy.abio.outputs) AbinitOutputFilePanel (class in abipy.panels.outputs) AbinitOutputFilePanelWithFileInput (class in abipy.panels.outputs) AbinitSpaceGroup (class in abipy.core.symmetries) AbinitTask (class in abipy.flowtk.tasks) AbinitTaskMockedStart (class in abipy.flowtk.mocks) AbinitTextFile (class in abipy.abio.outputs) AbinitTimerParser (class in abipy.abio.timer) abiopen() (abipy.flowtk.nodes.FileNode method) (in module abipy.abilab) abiopen_ext2class_table() (in module abipy.abilab) abipanel() (in module abipy.abilab) (in module abipy.panels.core) abipy.abilab module abipy.abio module abipy.abio.abivars module abipy.abio.abivars_db module abipy.abio.decorators module abipy.abio.enums module abipy.abio.factories module abipy.abio.input_tags module abipy.abio.inputs module abipy.abio.outputs module abipy.abio.robots module abipy.abio.timer module abipy.abio.variable module abipy.core module abipy.core.abinit_units module abipy.core.atom module abipy.core.fields module abipy.core.func1d module abipy.core.globals module abipy.core.gsphere module abipy.core.irrepsdb module abipy.core.kpoints module abipy.core.mesh3d module abipy.core.mixins module abipy.core.restapi module abipy.core.site_symmetries module abipy.core.skw module abipy.core.structure module abipy.core.symmetries module abipy.data module abipy.dfpt module abipy.dfpt.anaddbnc module abipy.dfpt.converters module abipy.dfpt.ddb module abipy.dfpt.elastic module abipy.dfpt.frozen_phonons module abipy.dfpt.gruneisen module abipy.dfpt.ifc module abipy.dfpt.msqdos module abipy.dfpt.phonons module abipy.dfpt.phtk module abipy.dfpt.qha module abipy.dfpt.qha_2D module abipy.dfpt.qha_general_stress module abipy.dfpt.raman module abipy.dfpt.vsound module abipy.dfpt.vzsisa module abipy.display module abipy.display.mvtk module abipy.display.utils module abipy.dynamics module abipy.dynamics.analyzer module abipy.dynamics.hist module abipy.electrons module abipy.electrons.bse module abipy.electrons.charges module abipy.electrons.denpot module abipy.electrons.ebands module abipy.electrons.effmass_analyzer module abipy.electrons.eskw module abipy.electrons.fatbands module abipy.electrons.fold2bloch module abipy.electrons.gsr module abipy.electrons.gw module abipy.electrons.lobster module abipy.electrons.lruj module abipy.electrons.optic module abipy.electrons.psps module abipy.electrons.scissors module abipy.electrons.scr module abipy.embedding module abipy.embedding.embedding_ifc module abipy.embedding.utils_ifc module abipy.eph module abipy.eph.a2f module abipy.eph.common module abipy.eph.cumulant module abipy.eph.eph_plotter module abipy.eph.gpath module abipy.eph.gstore module abipy.eph.rta module abipy.eph.sigeph module abipy.eph.transportfile module abipy.eph.v1sym module abipy.eph.varpeq module abipy.eph.wr module abipy.flowtk module abipy.flowtk.abiinspect module abipy.flowtk.abiobjects module abipy.flowtk.abiphonopy module abipy.flowtk.abitimer module abipy.flowtk.dfpt_works module abipy.flowtk.effmass_works module abipy.flowtk.eph_flows module abipy.flowtk.events module abipy.flowtk.flows module abipy.flowtk.gruneisen module abipy.flowtk.gs_works module abipy.flowtk.gw_works module abipy.flowtk.gwr_works module abipy.flowtk.launcher module abipy.flowtk.lumi_works module abipy.flowtk.mocks module abipy.flowtk.netcdf module abipy.flowtk.nodes module abipy.flowtk.pseudos module abipy.flowtk.qadapters module abipy.flowtk.qjobs module abipy.flowtk.qutils module abipy.flowtk.tasks module abipy.flowtk.utils module abipy.flowtk.vzsisa module abipy.flowtk.works module abipy.flowtk.wrappers module abipy.flowtk.zsisa module abipy.iotools module abipy.iotools.visualizer module abipy.iotools.xsf module abipy.lumi module abipy.lumi.deltaSCF module abipy.lumi.lineshape module abipy.ml module abipy.ml.aseml module abipy.ml.extxyz_generator module abipy.ml.ml_phonopy module abipy.ml.relax_scanner module

abipy.ml.tools module abipy.panels module abipy.panels.a2f module abipy.panels.core module abipy.panels.ddb module abipy.panels.fatbands module abipy.panels.flows module abipy.panels.gsr module abipy.panels.hist module abipy.panels.nodes module abipy.panels.outputs module abipy.panels.phonons module abipy.panels.sigeph module abipy.panels.structure module abipy.panels.tasks module abipy.panels.viewers module abipy.panels.works module abipy.ppcodes module abipy.ppcodes.base_parser module abipy.ppcodes.oncv_parser module abipy.ppcodes.oncv_plotter module abipy.ppcodes.ppgen module abipy.tools module abipy.tools.bessel module abipy.tools.cli_parsers module abipy.tools.context_managers module abipy.tools.decorators module abipy.tools.derivatives module abipy.tools.devtools module abipy.tools.duck module abipy.tools.fftprof module abipy.tools.iotools module abipy.tools.notebooks module abipy.tools.numtools module abipy.tools.parallel module abipy.tools.plotting module abipy.tools.printing module abipy.tools.serialization module abipy.tools.tensors module abipy.tools.text module abipy.tools.typing module abipy.wannier90 module abipy.wannier90.abiwan module abipy.wannier90.win module abipy.wannier90.wout module abipy.waves module abipy.waves.pwwave module abipy.waves.wfkfile module abipy_logo1() (in module abipy.abilab) abipy_logo2() (in module abipy.abilab) abipy_logo3() (in module abipy.abilab) AbipyParameterized (class in abipy.panels.core) abirobot() (in module abipy.abilab) abisanitize_atoms() (in module abipy.ml.aseml) abivalidate() (abipy.abio.inputs.AbiAbstractInput method) (abipy.abio.inputs.AbinitInput method) (abipy.abio.inputs.AnaddbInput method) (abipy.abio.inputs.OpticInput method) abivalidate_inputs() (abipy.flowtk.flows.Flow method) AbiwanFile (class in abipy.wannier90.abiwan) AbiwanReader (class in abipy.wannier90.abiwan) AbiwanRobot (class in abipy.wannier90.abiwan) ABO3() (abipy.core.structure.Structure class method) AboRobot (class in abipy.abio.outputs) abs() (abipy.core.func1d.Function1D method) AbstractInput (class in abipy.abio.inputs) AbstractQHA (class in abipy.dfpt.qha) AbstractQmeshAnalyzer (class in abipy.dfpt.qha) accepted_basis_sets (abipy.electrons.lobster.LobsterInput attribute) accoustic_sum() (in module abipy.embedding.utils_ifc) AceViewer (class in abipy.panels.viewers) acoustic_debye_temp (abipy.dfpt.gruneisen.GrunsNcFile property) acoustic_indices() (abipy.dfpt.phonons.PhononBands method) ActiveBar (class in abipy.panels.core) add_abiobjects() (abipy.abio.inputs.AbiAbstractInput method) add_array() (abipy.tools.plotting.ArrayPlotter method) add_arrays() (abipy.tools.plotting.ArrayPlotter method) add_basename_info() (abipy.ml.aseml.MlBase method) add_comment() (abipy.flowtk.launcher.ScriptEditor method) add_data_ddb() (in module abipy.dfpt.converters) add_deps() (abipy.flowtk.nodes.Node method) add_ebands() (abipy.electrons.ebands.ElectronBandsPlotter method) add_ebands_task_to_work() (abipy.flowtk.tasks.ScfTask method) add_edos() (abipy.electrons.ebands.ElectronDosPlotter method) add_emptyline() (abipy.flowtk.launcher.ScriptEditor method) add_entry() (abipy.core.restapi.DatabaseStructures method) add_entry_from_file() (abipy.dynamics.analyzer.ArrheniusPlotter method) add_error() (abipy.flowtk.tasks.ParalHintsParser method) add_expose_options_to_parser() (in module abipy.tools.cli_parsers) add_extfile_of_node() (abipy.abio.robots.Robot method) add_fig_kwargs() (in module abipy.tools.plotting) add_file() (abipy.abio.robots.Robot method) (abipy.ppcodes.oncv_plotter.MultiOncvPlotter method) (abipy.tools.plotting.GenericDataFilesPlotter method) add_filechild() (abipy.flowtk.nodes.FileNode method) add_flow() (abipy.flowtk.launcher.MultiFlowScheduler method) (abipy.flowtk.launcher.PyFlowScheduler method) add_fundgap_span() (abipy.electrons.ebands.ElectronBands method) add_label_cycle() (abipy.flowtk.abiinspect.CyclesPlotter method) add_line() (abipy.flowtk.launcher.ScriptEditor method) add_lines() (abipy.flowtk.launcher.ScriptEditor method) add_main() (abipy.tools.iotools.PythonScript method) add_mdf() (abipy.electrons.bse.MdfPlotter method) add_mdf_file() (abipy.electrons.bse.MultipleMdfPlotter method) add_ncpaths() (abipy.electrons.lruj.LrujAnalyzer method) add_periodic_replicas() (in module abipy.tools.numtools) add_phbands() (abipy.dfpt.phonons.PhononBandsPlotter method) add_phdos() (abipy.dfpt.phonons.PhononDosPlotter method) add_phonon_works_and_build() (abipy.flowtk.gruneisen.GruneisenWork method) add_phonopy_works_and_build() (abipy.flowtk.abiphonopy.PhonopyGruneisenWork method) add_plotly_fig_kwargs() (in module abipy.tools.plotting) add_plotter() (abipy.dfpt.phonons.PhononBandsPlotter method) (abipy.electrons.ebands.ElectronBandsPlotter method) add_state() (abipy.core.atom.AtomicConfiguration method) add_tags() (abipy.abio.inputs.AbinitInput method) (abipy.abio.inputs.MultiDataset method) add_text() (abipy.abio.robots.RobotPythonScript method) add_vrect_to_fig() (abipy.panels.nodes.StatusCards method) addnew_from() (abipy.abio.inputs.MultiDataset method) ae (abipy.ppcodes.oncv_parser.AePsNamedTuple attribute) ae_core_density_on_mesh() (abipy.core.fields.Density class method) AePsNamedTuple (class in abipy.ppcodes.oncv_parser) afm_symmops (abipy.core.symmetries.AbinitSpaceGroup property) ALL_COMPS (abipy.dfpt.msqdos.MsqDos attribute) all_docs_with_tag() (abipy.flowtk.abiinspect.YamlTokenizer method) all_done (abipy.flowtk.works.Work property) ALL_ELASTIC_TENSOR_NAMES (abipy.dfpt.elastic.ElasticData attribute) all_have_ibte() (abipy.eph.rta.RtaRobot method) ALL_NN_TYPES (abipy.ml.aseml.CalcBuilder attribute) all_ok (abipy.flowtk.flows.Flow property) ALL_PIEZOELECTRIC_TENSOR_NAMES (abipy.dfpt.elastic.ElasticData attribute) all_qsamps (abipy.eph.a2f.A2fRobot attribute) ALL_STATUS (abipy.flowtk.nodes.Node attribute) all_status_strings() (abipy.flowtk.nodes.Status class method) ALL_TENSOR_NAMES (abipy.dfpt.elastic.ElasticData attribute) all_visunames() (abipy.iotools.visualizer.Visualizer class method) ALL_VOIGT_COMPS (abipy.ml.aseml.AseResultsComparator attribute) all_yaml_docs() (abipy.flowtk.abiinspect.YamlTokenizer method) allocate() (abipy.flowtk.flows.Flow method) (abipy.flowtk.works.Work method) allocated (abipy.flowtk.flows.Flow property) alpha (abipy.electrons.fatbands.FatBandsFile attribute) alphas (abipy.electrons.lruj.LrujResults attribute) alternate() (in module abipy.tools.numtools) amu() (abipy.dfpt.anaddbnc.AnaddbNcFile method) amu_list() (abipy.lumi.deltaSCF.DeltaSCF method) amu_symbol() (abipy.dfpt.gruneisen.GrunsNcFile method) anacompare_asr() (abipy.dfpt.ddb.DdbFile method) anacompare_becs() (abipy.dfpt.ddb.DdbRobot method) anacompare_dipdip() (abipy.dfpt.ddb.DdbFile method) anacompare_elastic() (abipy.dfpt.ddb.DdbRobot method) anacompare_eps0() (abipy.dfpt.ddb.DdbRobot method) anacompare_epsinf() (abipy.dfpt.ddb.DdbRobot method) anacompare_phdos() (abipy.dfpt.ddb.DdbFile method) anacompare_quad() (abipy.dfpt.ddb.DdbFile method) anacompare_rifcsph() (abipy.dfpt.ddb.DdbFile method) AnaddbError AnaddbInput (class in abipy.abio.inputs) AnaddbInputError AnaddbNcFile (class in abipy.dfpt.anaddbnc) AnaddbNcRobot (class in abipy.dfpt.anaddbnc) AnaddbTask (class in abipy.flowtk.tasks) anaget_dielectric_tensor_generator() (abipy.dfpt.ddb.DdbFile method) anaget_elastic() (abipy.dfpt.ddb.DdbFile method) anaget_epsinf_and_becs() (abipy.dfpt.ddb.DdbFile method) anaget_ifc() (abipy.dfpt.ddb.DdbFile method) anaget_interpolated_ddb() (abipy.dfpt.ddb.DdbFile method) anaget_nlo() (abipy.dfpt.ddb.DdbFile method) anaget_phbst_and_phdos_files() (abipy.dfpt.ddb.DdbFile method) anaget_phdoses_with_gauss() (in module abipy.dfpt.vzsisa) anaget_phmodes_at_qpoint() (abipy.dfpt.ddb.DdbFile method) anaget_phmodes_at_qpoints() (abipy.dfpt.ddb.DdbFile method) anaget_phonon_plotters() (abipy.dfpt.ddb.DdbRobot method) anaget_phonopy_ifc() (abipy.dfpt.ddb.DdbFile method) anaget_raman() (abipy.dfpt.ddb.DdbFile method) angle_tolerance (abipy.core.skw.ElectronInterpolator attribute) animate() (abipy.dfpt.phonons.PhononBandsPlotter method) (abipy.electrons.ebands.ElectronBandsPlotter method) any2mb() (in module abipy.flowtk.qutils) append() (abipy.abio.inputs.MultiDataset method) (abipy.dynamics.analyzer.ArrheniusPlotter method) append_plotter() (abipy.dfpt.phonons.PhononBandsPlotter method) Appender (class in abipy.tools.decorators) apply() (abipy.electrons.scissors.Scissors method) apply_getters() (abipy.flowtk.nodes.Dependency method) apply_scissors() (abipy.electrons.ebands.ElectronBands method) arange() (abipy.abio.inputs.AbinitInput method) arr_tt0 (abipy.dynamics.analyzer.Msdtt0 attribute) ArrayPlotter (class in abipy.tools.plotting) ArrheniusEntry (class in abipy.dynamics.analyzer) ArrheniusPlotter (class in abipy.dynamics.analyzer) as_bool() (in module abipy.flowtk.utils) as_calculator() (in module abipy.ml.aseml) as_condition() (abipy.flowtk.utils.Condition class method) as_ddb() (abipy.dfpt.ddb.DdbFile class method) as_dict() (abipy.abio.decorators.LdaUDecorator method) (abipy.abio.decorators.LexxDecorator method) (abipy.abio.decorators.SmearingDecorator method) (abipy.abio.decorators.SpinDecorator method) (abipy.abio.decorators.XcDecorator method) (abipy.abio.inputs.AbinitInput method) (abipy.abio.inputs.AnaddbInput method) (abipy.abio.inputs.Cut3DInput method) (abipy.abio.inputs.OpticInput method) (abipy.abio.robots.Robot method) (abipy.core.atom.NlkState method) (abipy.core.kpoints.KpointList method) (abipy.dfpt.ddb.Becs method) (abipy.electrons.ebands.ElectronBands method) (abipy.electrons.gsr.GsrFile method) (abipy.electrons.gw.QPState method) (abipy.flowtk.abiinspect.YamlDoc method) (abipy.flowtk.events.Correction method) (abipy.flowtk.events.DilatmxErrorHandler method) (abipy.flowtk.flows.Flow method) (abipy.flowtk.nodes.HistoryRecord method) (abipy.flowtk.nodes.NodeResults method) (abipy.flowtk.tasks.ParalHints method) (abipy.flowtk.tasks.TaskManager method) as_ebands() (abipy.electrons.ebands.ElectronBands class method) as_edos() (abipy.electrons.ebands.ElectronDos class method) as_flow() (abipy.flowtk.flows.Flow class method) as_kpoint() (abipy.core.kpoints.Kpoint class method) as_kpoints() (in module abipy.core.kpoints) as_manager() (abipy.flowtk.tasks.TaskManager class method) as_ngkpt() (abipy.core.structure.Structure method) as_node() (abipy.flowtk.nodes.Node class method) as_phbands() (abipy.dfpt.phonons.PhononBands class method) as_phdos() (abipy.dfpt.phonons.PhononDos class method) as_slice() (in module abipy.tools.duck) as_status() (abipy.flowtk.nodes.Status class method) (abipy.ppcodes.ppgen.Status class method) as_structure() (abipy.core.structure.Structure class method) asctime (abipy.flowtk.nodes.HistoryRecord attribute) ase_optimizer_cls() (in module abipy.ml.aseml) AseMdLog (class in abipy.ml.aseml) AseRelaxation (class in abipy.ml.aseml) AseResults (class in abipy.ml.aseml) AseResultsComparator (class in abipy.ml.aseml) AseTrajectoryPlotter (class in abipy.ml.aseml) ask_yes_no() (in module abipy.tools.iotools) ask_yesno() (in module abipy.tools.iotools) asr (abipy.panels.ddb.PanelWithAnaddbParams attribute) asr_breaking() (abipy.dfpt.phonons.PhononBands method) assume_gap() (abipy.eph.rta.RtaFile method) (abipy.eph.rta.RtaRobot method) atan_logders() (abipy.ppcodes.oncv_parser.OncvParser method) AtanLogDer (class in abipy.ppcodes.oncv_parser) AtomicConfiguration (class in abipy.core.atom) AtomicFile (class in abipy.tools.iotools) AtomicLevel (class in abipy.ppcodes.oncv_parser) atoms (abipy.ml.aseml.AseResults attribute) atoms_from_structure() (in module abipy.flowtk.abiphonopy) atsym (abipy.ppcodes.oncv_parser.OncvParser attribute) autodoc() (abipy.flowtk.tasks.TaskManager class method) autoparal_run() (abipy.flowtk.tasks.AbinitTask method) (abipy.flowtk.tasks.OpticTask method) available_advanced_options (abipy.electrons.lobster.LobsterInput attribute) average_gruneisen() (abipy.dfpt.gruneisen.GrunsNcFile method) averaged (abipy.electrons.lobster.CoxpFile attribute) avg_volume (abipy.dynamics.analyzer.DiffusionData attribute) (abipy.dynamics.analyzer.MdAnalyzer property)

B

b_qnu() (abipy.eph.varpeq.Polaron method) BaderCharges (class in abipy.electrons.charges) band_block() (abipy.electrons.eskw.EskwFile method) bands_dict (abipy.dfpt.phonons.PhononBandsPlotter property) bands_in() (abipy.wannier90.abiwan.AbiwanFile method) bands_statdiff() (abipy.electrons.ebands.ElectronBandsPlotter method) bandstructure_flow() (in module abipy.flowtk.flows) BandStructureWork (class in abipy.flowtk.works) bandwidths (abipy.electrons.ebands.ElectronBands property) base_point (abipy.core.kpoints.KpointStar property) BaseEphReader (class in abipy.eph.common) basename (abipy.abio.variable.InputVariable property) (abipy.flowtk.utils.Directory property) (abipy.flowtk.utils.File property) basename() (abipy.flowtk.nodes.FileNode method) BaseParser (class in abipy.ppcodes.base_parser) BaseRobotPanel (class in abipy.panels.core) bcc() (abipy.core.structure.Structure class method) bec_tasks (abipy.flowtk.abiphonopy.PhonopyWork attribute) becs (abipy.dfpt.anaddbnc.AnaddbNcFile attribute) Becs (class in abipy.dfpt.ddb) becs() (abipy.dfpt.anaddbnc.AnaddbNcFile method) BecWork (class in abipy.flowtk.works) best_angcoeff (abipy.dynamics.analyzer.DiffusionData attribute) binpath() (abipy.iotools.visualizer.Visualizer method) BlochRegularGridInterpolator (class in abipy.tools.numtools) block_mean_var() (in module abipy.dynamics.analyzer) block_size1 (abipy.dynamics.analyzer.DiffusionData attribute) block_size2 (abipy.dynamics.analyzer.DiffusionData attribute) block_sizes1 (abipy.dynamics.analyzer.SigmaBerend attribute)

block_sizes2 (abipy.dynamics.analyzer.SigmaBerend attribute) blocks() (abipy.dfpt.ddb.DdbFile method) BlueGeneJob (class in abipy.flowtk.qjobs) bma (abipy.core.func1d.Function1D property) born_to_lotosplitting() (in module abipy.dfpt.converters) Bose_einstein() (abipy.lumi.lineshape.Lineshape method) boxed_atom() (abipy.core.structure.Structure class method) boxed_molecule() (abipy.core.structure.Structure class method) boxplot() (abipy.dfpt.phonons.PhononBands method) (abipy.dfpt.phonons.PhononBandsPlotter method) (abipy.electrons.ebands.ElectronBands method) (abipy.electrons.ebands.ElectronBandsPlotter method) boxplotly() (abipy.dfpt.phonons.PhononBands method) (abipy.electrons.ebands.ElectronBands method) braket() (abipy.waves.pwwave.PWWaveFunction method) BSE (abipy.abio.enums.RUNL attribute) bse_with_mdf_inputs() (in module abipy.abio.factories) BseMdfWork (class in abipy.flowtk.works) bstart (abipy.eph.gstore.Gqk attribute) (abipy.eph.varpeq.Polaron attribute) bstop (abipy.eph.varpeq.Polaron attribute) build() (abipy.electrons.scissors.ScissorsBuilder method) (abipy.flowtk.flows.Flow method) (abipy.flowtk.works.Work method) build_and_pickle_dump() (abipy.flowtk.flows.Flow method) build_flow_main_parser() (in module abipy.flowtk) build_mesh() (in module abipy.tools.numtools) ButtonContext (class in abipy.panels.core) bxsf_write() (in module abipy.iotools.xsf) bz (abipy.core.kpoints.Ktables attribute) BzRegularGridInterpolator (class in abipy.tools.numtools)

C

cal_stress() (abipy.dfpt.qha_general_stress.QHA_ZSISA method) calc_kptbounds() (abipy.core.structure.Structure method) calc_ksampling() (abipy.core.structure.Structure method) calc_ngkpt() (abipy.core.structure.Structure method) calc_shiftk() (abipy.core.structure.Structure method) CalcBuilder (class in abipy.ml.aseml) calculate_gruns_finite_differences() (in module abipy.dfpt.gruneisen) calculate_gw_from_sigeph_skb() (abipy.eph.cumulant.CumulantSelfEnergy class method) calculate_sigma_skb_fromgw() (abipy.eph.cumulant.CumulantSelfEnergy method) callback() (abipy.flowtk.launcher.MultiFlowScheduler method) (abipy.flowtk.launcher.PyFlowScheduler method) can_change_physics (abipy.flowtk.events.DilatmxErrorHandler attribute) cancel() (abipy.flowtk.flows.Flow method) (abipy.flowtk.tasks.TaskManager method) cart_bounds() (abipy.core.kpoints.Kpath method) cart_coords() (abipy.core.kpoints.Kpoint method) cart_forces() (abipy.dfpt.ddb.DdbFile method) (abipy.electrons.gsr.GsrFile method) cart_stress_tensor() (abipy.dfpt.ddb.DdbFile method) (abipy.electrons.gsr.GsrFile method) cbk_qptdm_workflow() (abipy.flowtk.flows.G0W0WithQptdmFlow method) CC4S (abipy.abio.enums.GWR_TASK attribute) CC4S_FULL (abipy.abio.enums.GWR_TASK attribute) cell (abipy.ml.aseml.RX_MODE attribute) cempty() (abipy.core.gsphere.GSphere method) (abipy.core.mesh3d.Mesh3D method) center_wrt_defect() (in module abipy.embedding.utils_ifc) change_ext_from_top() (in module abipy.tools.iotools) change_labels() (abipy.abio.robots.Robot method) change_manager() (abipy.flowtk.flows.Flow method) change_task_start() (in module abipy.flowtk.mocks) check_dependencies() (abipy.flowtk.flows.Flow method) check_pid_file() (abipy.flowtk.flows.Flow method) check_site_symmetries() (abipy.core.site_symmetries.SiteSymmetries method) (abipy.dfpt.ddb.Becs method) (abipy.dfpt.msqdos.MsqDos method) check_spectator() (in module abipy.flowtk.nodes) check_status() (abipy.flowtk.flows.Flow method) (abipy.flowtk.mocks.InfiniteFlow method) (abipy.flowtk.nodes.FileNode method) (abipy.flowtk.nodes.Node method) (abipy.flowtk.works.Work method) (abipy.ppcodes.ppgen.OncvGenerator method) CHECK_SYMTAB (abipy.abio.enums.WFK_TASK attribute) check_unfilled_entries_in_gvals() (abipy.eph.gstore.GstoreFile method) check_vasp_success() (in module abipy.ml.extxyz_generator) check_weights() (abipy.core.kpoints.KpointList method) chemical_symbols() (abipy.iotools.ETSF_Reader method) CHI0 (abipy.abio.enums.GWR_TASK attribute) chi0_coefficients (abipy.electrons.lruj.LrujResults attribute) chi_coefficients (abipy.electrons.lruj.LrujResults attribute) chmod() (abipy.flowtk.utils.File method) chneut (abipy.panels.ddb.PanelWithAnaddbParams attribute) chroot() (abipy.flowtk.flows.Flow method) (abipy.flowtk.works.Work method) chunks() (abipy.flowtk.works.Work method) cif_file() (in module abipy.data) class_for_ext() (abipy.abio.robots.Robot class method) class_handles_filename() (abipy.abio.robots.Robot class method) (abipy.dfpt.ddb.DdbRobot class method) CLASSIFY (abipy.abio.enums.WFK_TASK attribute) clean() (abipy.flowtk.utils.Directory method) clean_structure() (in module abipy.embedding.utils_ifc) cleanup() (abipy.flowtk.launcher.PyFlowScheduler method) close() (abipy.abio.abivars.AbinitInputFile method) (abipy.abio.outputs.OutNcFile method) (abipy.abio.robots.Robot method) (abipy.dfpt.anaddbnc.AnaddbNcFile method) (abipy.dfpt.gruneisen.GrunsNcFile method) (abipy.dfpt.phonons.PhbstFile method) (abipy.dfpt.phonons.PhdosFile method) (abipy.dfpt.qha.QHA3P method) (abipy.dynamics.hist.HistFile method) (abipy.electrons.bse.MdfFile method) (abipy.electrons.eskw.EskwFile method) (abipy.electrons.fatbands.FatBandsFile method) (abipy.electrons.fold2bloch.Fold2BlochNcfile method) (abipy.electrons.gsr.GsrFile method) (abipy.electrons.gw.SigresFile method) (abipy.electrons.optic.OpticNcFile method) (abipy.electrons.psps.PspsFile method) (abipy.electrons.scr.ScrFile method) (abipy.eph.a2f.A2fFile method) (abipy.eph.gpath.GpathFile method) (abipy.eph.gstore.GstoreFile method) (abipy.eph.rta.RtaFile method) (abipy.eph.sigeph.SigEPhFile method) (abipy.eph.transportfile.TransportFile method) (abipy.eph.v1sym.V1symFile method) (abipy.eph.varpeq.VarpeqFile method) (abipy.eph.wr.WrNcFile method) (abipy.flowtk.abiinspect.YamlTokenizer method) (abipy.tools.iotools.AtomicFile method) (abipy.wannier90.abiwan.AbiwanFile method) (abipy.wannier90.wout.WoutFile method) (abipy.waves.wfkfile.WfkFile method) close_all_cards() (abipy.panels.nodes.StatusCards method) cmdarg (abipy.iotools.visualizer.Visualizer property) cod_search() (in module abipy.core.structure) CodStructures (class in abipy.core.restapi) color_der (abipy.electrons.psps.PspsFile attribute) color_hex() (abipy.flowtk.nodes.Node method) color_l (abipy.ppcodes.oncv_plotter.OncvPlotter attribute) color_opts (abipy.flowtk.nodes.Status property) color_rgb (abipy.flowtk.nodes.FileNode attribute) (abipy.flowtk.nodes.Node attribute) (abipy.flowtk.tasks.AnaddbTask attribute) (abipy.flowtk.tasks.DdkTask attribute) (abipy.flowtk.tasks.EffMassTask attribute) (abipy.flowtk.tasks.ElasticTask attribute) (abipy.flowtk.tasks.EphTask attribute) (abipy.flowtk.tasks.GwrTask attribute) (abipy.flowtk.tasks.KerangeTask attribute) (abipy.flowtk.tasks.NscfTask attribute) (abipy.flowtk.tasks.OpticTask attribute) (abipy.flowtk.tasks.PhononTask attribute) (abipy.flowtk.tasks.RelaxTask attribute) (abipy.flowtk.tasks.ScfTask attribute) (abipy.flowtk.tasks.SigmaTask attribute)

color_spin (abipy.electrons.gw.SigresFile attribute) (abipy.eph.sigeph.SigEPhFile attribute) colored (abipy.flowtk.nodes.Status property) colormap (abipy.dfpt.qha.AbstractQmeshAnalyzer attribute) colormap_widget() (in module abipy.display.utils) colors_dropdow() (in module abipy.display.utils) combiboxplot() (abipy.dfpt.phonons.PhononBandsPlotter method) (abipy.electrons.ebands.ElectronBandsPlotter method) combiplot() (abipy.dfpt.phonons.PhononBandsPlotter method) (abipy.dfpt.phonons.PhononDosPlotter method) (abipy.dynamics.hist.HistRobot method) (abipy.electrons.ebands.ElectronBandsPlotter method) (abipy.electrons.ebands.ElectronDosPlotter method) (abipy.flowtk.abiinspect.CyclesPlotter method) combiplotly() (abipy.dfpt.phonons.PhononBandsPlotter method) (abipy.dfpt.phonons.PhononDosPlotter method) (abipy.electrons.ebands.ElectronBandsPlotter method) (abipy.electrons.ebands.ElectronDosPlotter method) comment (abipy.abio.inputs.AbinitInput property) common_eph_params() (abipy.eph.common.BaseEphReader method) common_oxidation_states() (in module abipy.dynamics.analyzer) compare_abivars() (abipy.flowtk.flows.Flow method) compare_d2de_scf_cycles() (abipy.abio.outputs.AbinitOutputFile method) compare_ebands() (abipy.flowtk.flows.Flow method) compare_gauss_edos() (abipy.electrons.ebands.ElectronBands method) compare_gs_scf_cycles() (abipy.abio.outputs.AbinitOutputFile method) compare_hist() (abipy.flowtk.flows.Flow method) compare_structures() (abipy.flowtk.flows.Flow method) compare_version() (abipy.flowtk.tasks.AbinitBuild method) CompareDdbWithMP (class in abipy.panels.ddb) composition (abipy.dynamics.analyzer.ArrheniusEntry attribute) compute_star() (abipy.core.kpoints.Kpoint method) computed_components_intersection() (abipy.electrons.optic.OpticRobot method) computed_dynmat() (abipy.dfpt.ddb.DdbFile method) Condition (class in abipy.flowtk.utils) conductivity (abipy.dynamics.analyzer.DiffusionData attribute) ConducWork (class in abipy.flowtk.works) conjugate() (abipy.core.func1d.Function1D method) connect_signals() (abipy.flowtk.flows.Flow method) connecting_vars() (abipy.flowtk.nodes.Dependency method) (abipy.flowtk.nodes.Product method) consistency_check() (abipy.dynamics.analyzer.MdAnalyzer method) ConvData (class in abipy.ppcodes.oncv_parser) convert() (abipy.core.structure.Structure method) (abipy.panels.structure.StructurePanel method) convert_to_ieee() (abipy.dfpt.elastic.ElasticData method) convert_ucart() (abipy.dfpt.msqdos.MsqDos method) coords_dataframe (abipy.core.restapi.DatabaseStructures property) cop_type (abipy.electrons.lobster.CoxpFile attribute) (abipy.electrons.lobster.ICoxpFile attribute) copy() (abipy.core.atom.AtomicConfiguration method) (abipy.core.gsphere.GSphere method) (abipy.core.kpoints.Kpoint method) (abipy.dynamics.analyzer.ArrheniusPlotter method) (abipy.electrons.gw.QPState method) (abipy.flowtk.tasks.ParalHints method) copy_abiext() (abipy.flowtk.utils.Directory method) copy_r() (abipy.flowtk.utils.Directory method) CORRALGO (class in abipy.ml.aseml) Correction (class in abipy.flowtk.events) corrections (abipy.flowtk.nodes.Node property) count() (abipy.core.gsphere.GSphere method) (abipy.core.kpoints.KpointList method) CoxpFile (class in abipy.electrons.lobster) cpdata2dst (abipy.flowtk.abiphonopy.PhonopyWork attribute) cplex (abipy.eph.gstore.Gqk attribute) cprint_traceback() (in module abipy.ml.ml_phonopy) crandom() (abipy.core.mesh3d.Mesh3D method) create_ascii_vib() (abipy.dfpt.phonons.PhononBands method) create_phononwebsite_json() (abipy.dfpt.phonons.PhononBands method) create_sqldb() (abipy.flowtk.launcher.MultiFlowScheduler method) create_tasks() (abipy.flowtk.works.QptdmWork method) create_xsf() (abipy.eph.wr.WrNcFile method) create_xyz_vib() (abipy.dfpt.phonons.PhononBands method) created (abipy.flowtk.nodes.HistoryRecord attribute) creation_date (abipy.flowtk.flows.Flow attribute) critical() (abipy.flowtk.nodes.NodeHistory method) CRITICAL_EVENTS (abipy.flowtk.tasks.NscfTask attribute) (abipy.flowtk.tasks.RelaxTask attribute) (abipy.flowtk.tasks.ScfTask attribute) (abipy.flowtk.tasks.SigmaTask attribute) CumulantEPhFile (class in abipy.eph.cumulant) CumulantPhReader (class in abipy.eph.cumulant) CumulantQpTempState (class in abipy.eph.cumulant) CumulantSelfEnergy (class in abipy.eph.cumulant) custodian_script_name (abipy.ml.extxyz_generator.SinglePointRunner attribute) customize_mpl() (in module abipy.tools.cli_parsers) Cut3D (class in abipy.flowtk.wrappers) cut3d() (abipy.flowtk.wrappers.Cut3D method) Cut3DInput (class in abipy.abio.inputs) cycle_class() (abipy.flowtk.tasks.AbinitTask method) CyclesPlotter (class in abipy.flowtk.abiinspect) czeros() (abipy.core.gsphere.GSphere method) (abipy.core.mesh3d.Mesh3D method)

D

D2DEScfCycle (class in abipy.flowtk.abiinspect) data (abipy.ppcodes.oncv_parser.GrepResults attribute) data_from_cplx_mode() (in module abipy.tools.numtools) (in module abipy.tools.plotting) DatabaseStructures (class in abipy.core.restapi) dataframe() (abipy.core.restapi.CodStructures method) (abipy.core.restapi.MpStructures method) (abipy.electrons.lobster.ICoxpFile method) dataframe_from_ebands() (in module abipy.electrons.ebands) dataframe_from_filepath() (in module abipy.tools.iotools) dataframe_from_pseudos() (in module abipy.electrons.psps) dataframe_from_results_list() (in module abipy.ml.aseml) dataframes_from_structures() (in module abipy.core.structure) dataset (abipy.abio.variable.InputVariable property) dbname (abipy.core.restapi.CodStructures attribute) (abipy.core.restapi.MpStructures attribute) dchide() (abipy.dfpt.anaddbnc.AnaddbNcFile method) dchidt() (abipy.dfpt.anaddbnc.AnaddbNcFile method) ddb_filepath (abipy.flowtk.tasks.AnaddbTask property) ddb_ngqpt() (abipy.eph.common.BaseEphReader method) ddb_ucell_to_ddb_supercell() (in module abipy.dfpt.converters) ddb_ucell_to_phonopy_supercell() (in module abipy.dfpt.converters) DdbError DdbFile (class in abipy.dfpt.ddb) DdbFile.AnaddbError DdbFilePanel (class in abipy.panels.ddb) DdbPanelWithFileInput (class in abipy.panels.ddb) DdbRobot (class in abipy.dfpt.ddb) DdbRobotPanel (class in abipy.panels.ddb) ddepert_from_gsinput() (in module abipy.abio.factories) DDK (abipy.abio.enums.WFK_TASK attribute) DDK_DIAGO (abipy.abio.enums.WFK_TASK attribute) ddk_filepath (abipy.flowtk.tasks.AnaddbTask property) ddk_filepaths (abipy.flowtk.tasks.OpticTask property) ddkpert_from_gsinput() (in module abipy.abio.factories) DdkTask (class in abipy.flowtk.tasks) debug() (abipy.flowtk.flows.Flow method) (abipy.flowtk.nodes.NodeHistory method) debye_temp (abipy.dfpt.gruneisen.GrunsNcFile property) (abipy.dfpt.phonons.PhononDos property) declare_var() (abipy.flowtk.launcher.ScriptEditor method) declare_vars() (abipy.flowtk.launcher.ScriptEditor method) decorate_ax() (abipy.dfpt.phonons.PhononBands method) (abipy.electrons.ebands.ElectronBands method) (abipy.ppcodes.oncv_plotter.OncvPlotter static method) decorate_plotly() (abipy.dfpt.phonons.PhononBands method) (abipy.electrons.ebands.ElectronBands method) decorators (abipy.abio.inputs.AbinitInput property) deepcopy() (abipy.abio.inputs.AbstractInput method) (abipy.abio.inputs.MultiDataset method) (abipy.dynamics.analyzer.MdAnalyzer method) (abipy.electrons.ebands.ElectronBands method) (abipy.flowtk.tasks.TaskManager method) DEFAULT_EDITOR (abipy.tools.iotools.Editor attribute) defect_index() (abipy.lumi.deltaSCF.DeltaSCF method) degeneracies() (abipy.electrons.ebands.ElectronBands method) delta (abipy.ml.aseml.CORRALGO attribute) delta_q() (abipy.lumi.deltaSCF.DeltaSCF method) Delta_Q() (abipy.lumi.lineshape.Lineshape method) Delta_Q_nu() (abipy.lumi.lineshape.Lineshape method) delta_r() (abipy.lumi.deltaSCF.DeltaSCF method) delta_sigmas1 (abipy.dynamics.analyzer.SigmaBerend attribute) delta_sigmas2 (abipy.dynamics.analyzer.SigmaBerend attribute) DeltaSCF (class in abipy.lumi.deltaSCF) den_to_3d_formatted() (abipy.abio.inputs.Cut3DInput class method) den_to_3d_indexed() (abipy.abio.inputs.Cut3DInput class method) den_to_cube() (abipy.abio.inputs.Cut3DInput class method) den_to_molekel() (abipy.abio.inputs.Cut3DInput class method) den_to_tecplot() (abipy.abio.inputs.Cut3DInput class method) den_to_xsf() (abipy.abio.inputs.Cut3DInput class method) densities() (abipy.ppcodes.oncv_parser.OncvParser method)

Density (class in abipy.core.fields) density() (abipy.electrons.denpot.DensityNcFile method) DensityNcFile (class in abipy.electrons.denpot) Dependency (class in abipy.flowtk.nodes) depends_on() (abipy.flowtk.nodes.Node method) depends_on_btn_click() (in module abipy.panels.core) deps (abipy.flowtk.nodes.Node property) deps_status (abipy.flowtk.nodes.Node property) derivatives() (abipy.core.atom.RadialFunction method) (abipy.electrons.ebands.ElectronBands method) det() (abipy.core.symmetries.LatticeRotation method) df() (abipy.ml.aseml.AseMdLog method) (abipy.ml.relax_scanner.RelaxScannerAnalyzer method) dfc() (in module abipy.panels.core) dfpt() (abipy.abio.inputs.AnaddbInput class method) dfpt_from_gsinput() (in module abipy.abio.factories) DielectricFunction (class in abipy.electrons.bse) (class in abipy.electrons.scr) DielectricTensor (class in abipy.tools.tensors) DielectricTensorGenerator (class in abipy.dfpt.ddb) diem (abipy.electrons.lruj.LrujResults attribute) diem_token (abipy.electrons.lruj.LrujResults attribute) diff_datasets() (abipy.abio.outputs.AbinitOutputFile method) diff_pos() (abipy.lumi.deltaSCF.DeltaSCF method) diff_pos_mass_weighted() (abipy.lumi.deltaSCF.DeltaSCF method) diff_stats() (in module abipy.ml.aseml) diff_two_structures() (in module abipy.ml.aseml) difflib() (abipy.tools.devtools.HtmlDiff method) diffusion_coeff (abipy.dynamics.analyzer.DiffusionData attribute) DiffusionData (class in abipy.dynamics.analyzer) DiffusionDataList (class in abipy.dynamics.analyzer) diffusions (abipy.dynamics.analyzer.ArrheniusEntry attribute) DilatmxError (class in abipy.flowtk.events) DilatmxErrorHandler (class in abipy.flowtk.events) dipdip (abipy.panels.ddb.PanelWithAnaddbParams attribute) dipquad (abipy.panels.ddb.PanelWithAnaddbParams attribute) dir2abifiles() (in module abipy.abilab) direct_gaps (abipy.electrons.ebands.ElectronBands property) DirectDiagoWork (class in abipy.flowtk.gwr_works) Directory (class in abipy.flowtk.utils) dirname (abipy.flowtk.utils.File property) Dirviz (class in abipy.flowtk.utils) disable_notebook() (in module abipy.core.globals) disable_show_messages() (abipy.panels.core.AbipyParameterized method) discard() (abipy.tools.iotools.AtomicFile method) disconnect_signals() (abipy.flowtk.flows.Flow method) dispersionless_states() (abipy.electrons.ebands.ElectronBands method) displ_shape (abipy.dfpt.phonons.PhononBands property) displace() (abipy.core.structure.Structure method) displace_one_site() (abipy.core.structure.Structure method) displacements_visu() (abipy.lumi.deltaSCF.DeltaSCF method) display_top() (in module abipy.tools.devtools) dist (abipy.ml.relax_scanner.Pair attribute) dist_gridpoints_in_spheres() (abipy.core.mesh3d.Mesh3D method) dmatpuopt (abipy.electrons.lruj.LrujResults attribute) docvar() (in module abipy.abio.abivars_db) dos_idos() (abipy.electrons.ebands.ElectronDos method) dos_method (abipy.panels.ddb.PanelWithAnaddbParams attribute) dot() (abipy.core.structure.Structure method) Dotdict (class in abipy.core.restapi) dotget() (abipy.core.restapi.Dotdict method) draw_displaced_parabolas() (abipy.lumi.deltaSCF.DeltaSCF method) draw_displacements_vesta() (abipy.lumi.deltaSCF.DeltaSCF method) ds() (abipy.core.kpoints.Kpath method) dte_from_gsinput() (in module abipy.abio.factories) dtepert_from_gsinput() (in module abipy.abio.factories) DteWork (class in abipy.flowtk.works) dump_args() (in module abipy.tools.decorators) dx() (abipy.core.func1d.Function1D method) dyn_mat_eigenvect() (abipy.dfpt.phonons.PhononBands method) (abipy.dfpt.phtk.NonAnalyticalPh method)

E

e0max (abipy.electrons.scissors.ScissorsBuilder property) e0min (abipy.electrons.scissors.ScissorsBuilder property) E_abs() (abipy.lumi.deltaSCF.DeltaSCF method) E_em() (abipy.lumi.deltaSCF.DeltaSCF method) E_FC_ex() (abipy.lumi.deltaSCF.DeltaSCF method) E_FC_gs() (abipy.lumi.deltaSCF.DeltaSCF method) E_zpl() (abipy.lumi.deltaSCF.DeltaSCF method) eb_plotax_kwargs() (abipy.electrons.fatbands.FatBandsFile method) eb_plotly_kwargs() (abipy.electrons.fatbands.FatBandsFile method) ebands (abipy.core.mixins.Has_ElectronBands property) (abipy.electrons.effmass_analyzer.EffMassAnalyzer property) (abipy.electrons.eskw.EskwFile property) (abipy.electrons.fatbands.FatBandsFile property) (abipy.electrons.fold2bloch.Fold2BlochNcfile property) (abipy.electrons.gsr.GsrFile property) (abipy.electrons.gw.SigresFile property) (abipy.eph.varpeq.Polaron property) (abipy.waves.wfkfile.WfkFile property) ebands() (abipy.electrons.optic.OpticNcFile method) (abipy.electrons.scr.ScrFile method) (abipy.eph.a2f.A2fFile method) (abipy.eph.gstore.GstoreFile method) (abipy.eph.rta.RtaFile method) (abipy.eph.sigeph.SigEPhFile method) (abipy.eph.transportfile.TransportFile method) (abipy.eph.varpeq.VarpeqFile method) (abipy.wannier90.abiwan.AbiwanFile method) ebands_input() (in module abipy.abio.factories) ebands_k() (abipy.eph.gpath.GpathFile method) ebands_kmesh (abipy.panels.core.PanelWithElectronBands attribute) ebands_kmesh_fileinput (abipy.panels.core.PanelWithElectronBands attribute) ebands_kpath (abipy.panels.core.PanelWithElectronBands attribute) ebands_kpath_fileinput (abipy.panels.core.PanelWithElectronBands attribute) ebands_kq() (abipy.eph.gpath.GpathFile method) ebands_list (abipy.electrons.ebands.ElectronBandsPlotter property) echarge (abipy.core.atom.AtomicConfiguration property) ecut() (abipy.electrons.gsr.GsrFile method) ecuts (abipy.electrons.psps.VnlProjector property) ediff (abipy.ml.relax_scanner.Pair attribute) edit_file() (abipy.flowtk.utils.Editor method) (abipy.tools.iotools.Editor method) edit_files() (abipy.flowtk.utils.Editor method) (abipy.tools.iotools.Editor method) Editor (class in abipy.flowtk.utils) (class in abipy.tools.iotools) EditorError edos() (abipy.eph.a2f.A2fFile method) (abipy.eph.sigeph.SigEPhFile method) edos_list (abipy.electrons.ebands.ElectronDosPlotter property) edos_method (abipy.panels.core.PanelWithElectronBands attribute) edos_step_ev (abipy.panels.core.PanelWithElectronBands attribute) edos_width_ev (abipy.panels.core.PanelWithElectronBands attribute) edoses_list (abipy.electrons.ebands.ElectronBandsPlotter property) eff_freq_ex() (abipy.lumi.deltaSCF.DeltaSCF method) eff_freq_gs() (abipy.lumi.deltaSCF.DeltaSCF method) eff_freq_multiD() (abipy.lumi.lineshape.Lineshape method) effective_mass() (abipy.lumi.deltaSCF.DeltaSCF method) effmass_accuracy (abipy.panels.core.PanelWithElectronBands attribute) effmass_degtol_ev (abipy.panels.core.PanelWithElectronBands attribute) effmass_spin (abipy.panels.core.PanelWithElectronBands attribute) EffMassAnalyzer (class in abipy.electrons.effmass_analyzer) EffMassAutoDFPTWork (class in abipy.flowtk.effmass_works) EffMassDFPTWork (class in abipy.flowtk.effmass_works) EffMassLineWork (class in abipy.flowtk.effmass_works) EffMassTask (class in abipy.flowtk.tasks) EGEW (abipy.abio.enums.GWR_TASK attribute) EGW0 (abipy.abio.enums.GWR_TASK attribute) eig (abipy.ppcodes.oncv_parser.AtomicLevel attribute) eigens (abipy.electrons.ebands.ElectronBands property) EINTERP (abipy.abio.enums.WFK_TASK attribute) einterp() (abipy.electrons.eskw.EskwFile method) elastic_constants() (abipy.dfpt.qha_general_stress.QHA_ZSISA method) elastic_data() (abipy.dfpt.anaddbnc.AnaddbNcFile method) ElasticData (class in abipy.dfpt.elastic) ElasticTask (class in abipy.flowtk.tasks) ElasticWork (class in abipy.flowtk.dfpt_works) ElectronBands (class in abipy.electrons.ebands) ElectronBandsPlotter (class in abipy.electrons.ebands) ElectronDos (class in abipy.electrons.ebands) ElectronDosPlotter (class in abipy.electrons.ebands) ElectronInterpolator (class in abipy.core.skw) Embedded_phonons (class in abipy.embedding.embedding_ifc) empty() (abipy.core.gsphere.GSphere method) (abipy.core.mesh3d.Mesh3D method) empty_with_ibz() (abipy.electrons.ebands.ElectronBands class method) enable_notebook() (in module abipy.core.globals) ene (abipy.ml.aseml.AseResults attribute) enemax() (abipy.electrons.ebands.ElectronBands method) enemin() (abipy.electrons.ebands.ElectronBands method) energies (abipy.dfpt.frozen_phonons.FrozenPhonon property) (abipy.electrons.lobster.CoxpFile attribute) (abipy.electrons.lobster.LobsterDoscarFile attribute) (abipy.ppcodes.oncv_parser.AtanLogDer attribute) (abipy.ppcodes.oncv_parser.ConvData attribute) energy (abipy.ml.relax_scanner.Entry attribute) energy() (abipy.electrons.gsr.GsrFile method) energy_per_atom() (abipy.electrons.gsr.GsrFile method) energy_terms() (abipy.electrons.gsr.GsrFile method) enforce_znucl_and_typat() (abipy.abio.inputs.AbinitInput method) engine (abipy.dynamics.analyzer.DiffusionData attribute) (abipy.dynamics.analyzer.MdAnalyzer property) enter_context() (abipy.tools.iotools.ExitStackWithFiles method)

ENTRIES (abipy.flowtk.tasks.TaskManager attribute) Entry (class in abipy.eph.varpeq) (class in abipy.ml.relax_scanner) EnumAction (class in abipy.tools.cli_parsers) EnumMixin (class in abipy.abio.enums) EosWork (class in abipy.flowtk.gs_works) EPH (abipy.abio.enums.RUNL attribute) eph_ngqpt_fine() (abipy.eph.common.BaseEphReader method) EphPlotter (class in abipy.eph.eph_plotter) EphPotFlow (class in abipy.flowtk.eph_flows) EphSelfEnergy (class in abipy.eph.sigeph) EphTask (class in abipy.flowtk.tasks) eps0() (abipy.dfpt.anaddbnc.AnaddbNcFile method) eps0_gamma_ev (abipy.panels.ddb.PanelWithAnaddbParams attribute) epsinf (abipy.dfpt.anaddbnc.AnaddbNcFile attribute) epsinf() (abipy.dfpt.anaddbnc.AnaddbNcFile method) err_conductivity (abipy.dynamics.analyzer.DiffusionData attribute) err_diffusion_coeff (abipy.dynamics.analyzer.DiffusionData attribute) err_diffusions (abipy.dynamics.analyzer.ArrheniusEntry attribute) err_msd (abipy.dynamics.analyzer.DiffusionData attribute) errMSDScorrelated (abipy.dynamics.analyzer.DiffusionData attribute) Error (abipy.abio.decorators.AbinitInputDecorator attribute) (abipy.abio.inputs.AbinitInput attribute) (abipy.abio.inputs.AnaddbInput attribute) (abipy.abio.inputs.MultiDataset attribute) (abipy.abio.inputs.OpticInput attribute) (abipy.core.kpoints.KpointList attribute) (abipy.dfpt.ddb.DdbFile attribute) (abipy.electrons.ebands.ElectronBands attribute) (abipy.electrons.scissors.Scissors attribute) (abipy.flowtk.abiinspect.YamlTokenizer attribute) (abipy.flowtk.events.EventsParser attribute) (abipy.flowtk.flows.Flow attribute) (abipy.flowtk.launcher.PyLauncher attribute) (abipy.flowtk.nodes.Node attribute) (abipy.flowtk.tasks.ParalHints attribute) (abipy.flowtk.tasks.ParalHintsParser attribute) (abipy.iotools.visualizer.Visualizer attribute) (abipy.ppcodes.base_parser.BaseParser attribute) (abipy.tools.iotools.Editor attribute) errored_tasks (abipy.flowtk.flows.Flow property) errors (abipy.ppcodes.base_parser.BaseParser attribute) (abipy.ppcodes.base_parser.BaseParser property) EskwFile (class in abipy.electrons.eskw) estimated_start_time() (abipy.flowtk.qjobs.PbsProJob method) (abipy.flowtk.qjobs.QueueJob method) (abipy.flowtk.qjobs.SlurmJob method) etotals() (abipy.dynamics.hist.HistFile method) ETSF_Reader (class in abipy.iotools) eval_abinit_operators() (abipy.abio.abivars.AbinitInputParser static method) eval_kpoint() (abipy.tools.numtools.BzRegularGridInterpolator method) eval_line() (abipy.tools.numtools.BlochRegularGridInterpolator method) eval_points() (abipy.tools.numtools.BlochRegularGridInterpolator method) eval_sk() (abipy.core.skw.ElectronInterpolator method) (abipy.core.skw.SkwInterpolator method) (abipy.wannier90.abiwan.HWanR method) evaluate_rpn() (in module abipy.flowtk.utils) event_class (abipy.flowtk.events.DilatmxErrorHandler attribute) event_handlers (abipy.flowtk.nodes.Node property) events (abipy.abio.outputs.AbinitTextFile property) EventsParser (class in abipy.flowtk.events) exc_mdf() (abipy.electrons.bse.MdfFile method) exceptions (abipy.abio.robots.Robot property) (abipy.flowtk.nodes.NodeResults property) exclude_nodes() (abipy.flowtk.tasks.TaskManager method) executable (abipy.flowtk.tasks.AbinitTask property) (abipy.flowtk.tasks.AnaddbTask property) (abipy.flowtk.tasks.OpticTask property) execute_js() (abipy.panels.flows.JsPane method) exists (abipy.flowtk.utils.Directory property) (abipy.flowtk.utils.File property) ExitStackWithFiles (class in abipy.tools.iotools) explain() (abipy.flowtk.flows.Flow method) export() (abipy.core.structure.Structure method) export_envar() (abipy.flowtk.launcher.ScriptEditor method) export_envars() (abipy.flowtk.launcher.ScriptEditor method) export_structure() (abipy.core.mixins.Has_Structure method) export_to_cube() (abipy.core.fields.Density method) export_ur2() (abipy.waves.pwwave.PWWaveFunction method) (abipy.waves.wfkfile.WfkFile method) expose() (abipy.core.mixins.NotebookWriter method) (abipy.dynamics.analyzer.DiffusionDataList method) expose_ebands() (abipy.core.mixins.Has_ElectronBands method) expose_phbands() (abipy.core.mixins.Has_PhononBands method) EXT (abipy.abio.outputs.AboRobot attribute) (abipy.dfpt.anaddbnc.AnaddbNcRobot attribute) (abipy.dfpt.ddb.DdbRobot attribute) (abipy.dynamics.hist.HistRobot attribute) (abipy.electrons.gw.SigresRobot attribute) (abipy.electrons.optic.OpticRobot attribute) (abipy.electrons.psps.PspsRobot attribute) (abipy.eph.a2f.A2fRobot attribute) (abipy.eph.gpath.GpathRobot attribute) (abipy.eph.gstore.GstoreRobot attribute) (abipy.eph.rta.RtaRobot attribute) (abipy.eph.sigeph.SigEPhRobot attribute) (abipy.eph.varpeq.VarpeqRobot attribute) (abipy.wannier90.abiwan.AbiwanRobot attribute) extcls_supporting_panel() (in module abipy.abilab) extend() (abipy.abio.inputs.MultiDataset method) extract_point_group() (in module abipy.core.skw) ExtxyzIOWriter (class in abipy.ml.extxyz_generator)

F

FatBandsFile (class in abipy.electrons.fatbands) FatBandsFilePanel (class in abipy.panels.fatbands) FC_factor_approx() (abipy.lumi.deltaSCF.DeltaSCF method) fcc() (abipy.core.structure.Structure class method) fermie (abipy.electrons.ebands.ElectronBands attribute) (abipy.electrons.lobster.CoxpFile attribute) fetch_tasks_to_run() (abipy.flowtk.launcher.PyLauncher method) fft() (abipy.core.func1d.Function1D method) fft_g2r() (abipy.core.mesh3d.Mesh3D method) fft_r2g() (abipy.core.mesh3d.Mesh3D method) FFTBenchmark (class in abipy.tools.fftprof) field_name (abipy.electrons.denpot.DensityNcFile attribute) (abipy.electrons.denpot.PotNcFile attribute) (abipy.electrons.denpot.VhartreeNcFile attribute) (abipy.electrons.denpot.VhxcNcFile attribute) (abipy.electrons.denpot.VxcNcFile attribute) File (class in abipy.flowtk.utils) file_with_ext_indir() (in module abipy.tools.iotools) filechildren (abipy.flowtk.nodes.FileNode property) filename (abipy.flowtk.nodes.HistoryRecord attribute) FileNode (class in abipy.flowtk.nodes) filepath (abipy.flowtk.nodes.Product property) (abipy.panels.nodes.FilePathSelect property) FilepathFixer (class in abipy.flowtk.utils) FilePathSelect (class in abipy.panels.nodes) filesfile_string (abipy.flowtk.tasks.AbinitTask property) (abipy.flowtk.tasks.AnaddbTask property) (abipy.flowtk.tasks.OpticTask property) filter_by_runlevel() (abipy.abio.inputs.MultiDataset method) filter_by_spgnum() (abipy.core.restapi.DatabaseStructures method) filter_by_tags() (abipy.abio.inputs.MultiDataset method) final_energy() (abipy.dynamics.hist.HistFile method) final_pressure() (abipy.dynamics.hist.HistFile method) final_structure (abipy.dynamics.hist.HistFile property) final_structure() (abipy.abio.outputs.AbinitOutputFile method) final_structures() (abipy.abio.outputs.AbinitOutputFile method) finalize() (abipy.flowtk.effmass_works.FrohlichZPRFlow method) (abipy.flowtk.flows.Flow method) (abipy.flowtk.vzsisa.VzsisaFlow method) (abipy.flowtk.zsisa.ZsisaFlow method) finalized (abipy.flowtk.nodes.Node property) find() (abipy.core.kpoints.KpointList method) find_1den_files() (abipy.flowtk.utils.Directory method) find_1wf_files() (abipy.flowtk.utils.Directory method) find_closest() (abipy.core.kpoints.KpointList method) find_convindex() (in module abipy.tools.numtools) find_deadlocks() (abipy.flowtk.flows.Flow method) find_degs_sk() (in module abipy.tools.numtools) find_free_port() (in module abipy.tools.notebooks) find_ik_glob_kpoint() (abipy.eph.gstore.GstoreReader method) find_iq_glob_qpoint() (abipy.eph.gstore.GstoreReader method) find_kpoint_fileindex() (abipy.electrons.scr.ScrReader method) find_last_timden_file() (abipy.flowtk.utils.Directory method) find_little_group() (abipy.core.symmetries.AbinitSpaceGroup method) find_mesh_index() (abipy.core.func1d.Function1D method) find_minimum() (abipy.dfpt.qha_2D.QHA_2D method) find_mu() (abipy.electrons.ebands.ElectronDos method) find_optconf() (abipy.flowtk.tasks.AbinitTask method) find_parent_with_ext() (abipy.flowtk.nodes.Node method) find_points_along_path() (abipy.core.kpoints.Kpath method) (in module abipy.core.kpoints) find_qpkinds() (abipy.eph.sigeph.SigEPhFile method) find_spec_nn() (in module abipy.ml.aseml) find_string() (abipy.ppcodes.oncv_parser.OncvParser method) findname_in_hsym_stars() (abipy.core.structure.Structure method) finite_diff() (abipy.core.func1d.Function1D method) (abipy.core.kpoints.Kpath method) (in module abipy.tools.derivatives) fit_df (abipy.electrons.lruj.LrujResults attribute) fit_energies() (abipy.dfpt.qha.AbstractQHA method) fit_forth() (abipy.dfpt.vzsisa.Vzsisa method) fit_time_start (abipy.dynamics.analyzer.DiffusionData attribute) fit_time_stop (abipy.dynamics.analyzer.DiffusionData attribute) fit_to_frequency() (abipy.dfpt.frozen_phonons.FrozenPhonon method) fit_to_structure() (abipy.dfpt.elastic.ElasticData method) fit_tot_energies() (abipy.dfpt.vzsisa.Vzsisa method) fitted_frequencies() (abipy.dfpt.qha.QHA3P method) fix_abicritical() (abipy.flowtk.flows.Flow method) (abipy.flowtk.tasks.AbinitTask method) (abipy.flowtk.tasks.OpticTask method) fix_atoms() (in module abipy.ml.aseml) fix_ofiles() (abipy.flowtk.tasks.RelaxTask method) fix_omp_num_threads() (in module abipy.tools.cli_parsers) fix_paths() (abipy.flowtk.utils.FilepathFixer method) fix_queue_critical() (abipy.flowtk.flows.Flow method) (abipy.flowtk.tasks.AbinitTask method) (abipy.flowtk.tasks.OpticTask method) flow (abipy.flowtk.launcher.PyFlowScheduler property) (abipy.flowtk.works.Work property) Flow (class in abipy.flowtk.flows) flow_main() (in module abipy.flowtk) FlowMultiPageApp (class in abipy.panels.flows) FlowPanel (class in abipy.panels.flows) fm_symmops (abipy.core.symmetries.AbinitSpaceGroup property) Fold2Bloch (class in abipy.flowtk.wrappers) Fold2BlochNcfile (class in abipy.electrons.fold2bloch) fontsize (abipy.dfpt.qha.AbstractQmeshAnalyzer attribute) force_stats() (abipy.electrons.gsr.GsrFile method) forces (abipy.ml.aseml.AseResults attribute) (abipy.ml.relax_scanner.Entry attribute) format_list() (abipy.abio.variable.InputVariable method) format_list2d() (abipy.abio.variable.InputVariable method) format_scalar() (abipy.abio.variable.InputVariable method) formula (abipy.dynamics.analyzer.MdAnalyzer property) frac_bounds() (abipy.core.kpoints.Kpath method) frac_coords (abipy.core.kpoints.Kpoint property) (abipy.core.kpoints.KpointList property) frac_coords1 (abipy.ml.relax_scanner.Pair attribute) frac_coords2 (abipy.ml.relax_scanner.Pair attribute) frac_coords_05_to_minus05() (in module abipy.embedding.utils_ifc) FrohlichZPRFlow (class in abipy.flowtk.effmass_works) from_abiml_dir() (abipy.dynamics.analyzer.MdAnalyzer class method) from_abiml_dirs() (abipy.dynamics.analyzer.MultiMdAnalyzer class method) from_abinit_file() (abipy.wannier90.win.Wannier90Input class method) from_abinit_run() (abipy.electrons.psps.PspsFile class method) (abipy.electrons.psps.PspsRobot class method) from_abinit_yaml_file() (abipy.ml.aseml.MlRelaxer class method) from_abistring() (abipy.core.structure.Structure class method) from_abivars() (abipy.core.structure.Structure class method) from_ase_atoms() (abipy.core.structure.Structure class method) from_ase_results() (abipy.ml.aseml.AseResultsComparator class method) from_atoms() (abipy.ml.aseml.AseResults class method) from_atoms_and_calculator() (abipy.ml.relax_scanner.Entry class method) from_binary_string() (abipy.core.mixins.AbinitNcFile class method) (abipy.electrons.ebands.ElectronBands class method) from_chgcar_poscar() (abipy.core.fields.Density class method) from_cod_id() (abipy.core.structure.Structure class method) from_constant() (abipy.core.func1d.Function1D class method) from_cube() (abipy.core.fields.Density class method) from_cut3d_outfile() (abipy.electrons.charges.HirshfeldCharges class method) from_ddb() (abipy.dfpt.vsound.SoundVelocity class method) (abipy.eph.eph_plotter.EphPlotter class method) from_ddb_file() (abipy.ml.aseml.FrozenPhononMl class method) from_ddb_list() (abipy.dfpt.gruneisen.GrunsNcFile class method) from_ddb_phdos_files() (abipy.dfpt.vzsisa.Vzsisa class method) from_den_ddb_dvdb() (abipy.flowtk.works.GKKPWork class method) from_dict() (abipy.abio.decorators.LdaUDecorator class method) (abipy.abio.decorators.LexxDecorator class method) (abipy.abio.decorators.SmearingDecorator class method) (abipy.abio.decorators.SpinDecorator class method) (abipy.abio.decorators.XcDecorator class method) (abipy.abio.inputs.AbinitInput class method) (abipy.abio.inputs.AnaddbInput class method) (abipy.abio.inputs.Cut3DInput class method) (abipy.abio.inputs.OpticInput class method) (abipy.abio.robots.Robot class method) (abipy.core.atom.NlkState method) (abipy.core.kpoints.KpointList class method) (abipy.electrons.ebands.ElectronBands class method) (abipy.flowtk.events.Correction class method) (abipy.flowtk.events.DilatmxErrorHandler class method) (abipy.flowtk.flows.Flow class method) (abipy.flowtk.nodes.HistoryRecord class method) (abipy.flowtk.nodes.NodeResults class method) (abipy.flowtk.tasks.ParalHints class method) (abipy.flowtk.tasks.TaskManager class method) from_dir() (abipy.abio.robots.Robot class method) (abipy.electrons.lobster.LobsterAnalyzer class method) (abipy.electrons.lobster.LobsterInput class method) from_dir_glob() (abipy.abio.robots.Robot class method) from_dirs() (abipy.abio.robots.Robot class method) from_file() (abipy.core.func1d.Function1D class method) (abipy.core.structure.Structure class method) (abipy.dfpt.anaddbnc.AnaddbNcFile class method) (abipy.dfpt.ddb.DdbFile class method) (abipy.dfpt.elastic.ElasticData class method) (abipy.dfpt.gruneisen.GrunsNcFile class method) (abipy.dfpt.ifc.InteratomicForceConstants class method) (abipy.dfpt.phonons.PhononBands class method) (abipy.dfpt.phtk.NonAnalyticalPh class method) (abipy.dfpt.raman.Raman class method) (abipy.dynamics.analyzer.ArrheniusEntry class method) (abipy.dynamics.hist.HistFile class method) (abipy.electrons.bse.MdfFile class method) (abipy.electrons.ebands.ElectronBands class method) (abipy.electrons.effmass_analyzer.EffMassAnalyzer class method) (abipy.electrons.eskw.EskwFile class method) (abipy.electrons.fatbands.FatBandsFile class method) (abipy.electrons.gsr.GsrFile class method) (abipy.electrons.gw.SigresFile class method) (abipy.electrons.lobster.CoxpFile class method) (abipy.electrons.lobster.ICoxpFile class method) (abipy.electrons.lobster.LobsterDoscarFile class method) (abipy.electrons.lruj.LrujResults class method) (abipy.electrons.optic.OpticNcFile class method) (abipy.electrons.psps.PspsFile class method) (abipy.electrons.scissors.ScissorsBuilder class method) (abipy.electrons.scr.ScrFile class method) (abipy.eph.a2f.A2fFile class method) (abipy.eph.cumulant.CumulantEPhFile class method) (abipy.eph.gpath.GpathFile class method) (abipy.eph.gstore.GstoreFile class method) (abipy.eph.rta.RtaFile class method) (abipy.eph.sigeph.SigEPhFile class method) (abipy.eph.transportfile.TransportFile class method) (abipy.eph.varpeq.VarpeqFile class method) (abipy.flowtk.abiinspect.Relaxation class method) (abipy.flowtk.abiinspect.ScfCycle class method) (abipy.flowtk.flows.Flow class method) (abipy.flowtk.nodes.Product class method) (abipy.flowtk.tasks.TaskManager class method) (abipy.iotools.visualizer.Visualizer class method) (abipy.ml.aseml.AseTrajectoryPlotter class method) (abipy.ppcodes.oncv_plotter.OncvPlotter class method) (abipy.ppcodes.ppgen.OncvGenerator class method) (abipy.tools.fftprof.FFTBenchmark class method) (abipy.tools.tensors.NLOpticalSusceptibilityTensor class method) (abipy.wannier90.abiwan.AbiwanFile class method)

from_filename() (abipy.core.atom.RadialFunction class method) from_filepath() (abipy.flowtk.works.ConducWork class method) from_filepaths() (abipy.panels.nodes.FilePathSelect class method) from_files() (abipy.abio.robots.Robot class method) (abipy.dfpt.ddb.DielectricTensorGenerator class method) (abipy.dfpt.qha.QHA class method) (abipy.dfpt.qha.QHA3P class method) (abipy.dfpt.qha.QHA3PF class method) (abipy.dfpt.qha_2D.QHA_2D class method) (abipy.dfpt.qha_general_stress.QHA_ZSISA class method) (abipy.electrons.charges.BaderCharges class method) (abipy.ppcodes.oncv_plotter.MultiOncvPlotter class method) (abipy.tools.plotting.GenericDataFilesPlotter class method) from_flow() (abipy.abio.robots.Robot class method) from_four_points_file() (abipy.lumi.deltaSCF.DeltaSCF class method) from_func() (abipy.core.func1d.Function1D class method) from_gs_input() (abipy.flowtk.abiphonopy.PhonopyGruneisenWork class method) (abipy.flowtk.abiphonopy.PhonopyWork class method) (abipy.flowtk.gruneisen.GruneisenWork class method) from_gsr_ddb_paths() (abipy.dfpt.vzsisa.Vzsisa class method) from_gsr_phdos_files() (abipy.dfpt.vzsisa.Vzsisa class method) from_gstore() (abipy.eph.gstore.Gqk class method) from_hist_file() (abipy.dynamics.analyzer.MdAnalyzer class method) from_hist_files() (abipy.dynamics.analyzer.MultiMdAnalyzer class method) from_input() (abipy.flowtk.tasks.AbinitTask class method) from_inputs() (abipy.abio.inputs.MultiDataset class method) (abipy.flowtk.flows.Flow class method) (abipy.flowtk.gs_works.EosWork class method) from_json_file() (abipy.abio.robots.Robot class method) (abipy.dfpt.qha_general_stress.QHA_ZSISA class method) (abipy.dfpt.vzsisa.Vzsisa class method) (abipy.lumi.deltaSCF.DeltaSCF class method) from_json_files() (abipy.abio.robots.Robot class method) from_kppa() (abipy.core.kpoints.IrredZone class method) from_lammps_dir() (abipy.dynamics.analyzer.MdAnalyzer class method) from_lammps_dirs() (abipy.dynamics.analyzer.MultiMdAnalyzer class method) from_lammps_input() (abipy.dynamics.analyzer.MdAnalyzer class method) from_lammpstrj() (abipy.dynamics.analyzer.MdAnalyzer class method) from_mpi_omp_lists() (abipy.flowtk.tasks.ParalHints class method) from_mpid() (abipy.core.structure.Structure class method) (abipy.dfpt.ddb.DdbFile class method) (abipy.electrons.ebands.ElectronBands class method) from_mpid_list() (abipy.dfpt.ddb.DdbRobot class method) from_name() (abipy.iotools.visualizer.Visualizer class method) from_name_and_structure() (abipy.core.kpoints.Kpoint class method) from_names() (abipy.core.kpoints.Kpath class method) from_ncreader() (abipy.core.symmetries.AbinitSpaceGroup class method) (abipy.dfpt.elastic.ElasticData class method) (abipy.dfpt.phtk.NonAnalyticalPh class method) from_ngkpt() (abipy.core.kpoints.IrredZone class method) from_nlkap() (abipy.core.atom.NlkState class method) from_node() (abipy.flowtk.nodes.NodeResults class method) from_nscf_task() (abipy.flowtk.gw_works.ScreeningWork class method) from_objects() (abipy.dfpt.ddb.DielectricTensorGenerator class method) from_phbands() (abipy.dfpt.frozen_phonons.FrozenPhonon class method) from_phbst() (abipy.dfpt.vsound.SoundVelocity class method) from_phononwfkq_work() (abipy.flowtk.works.GKKPWork class method) from_phonopy_instances() (abipy.embedding.embedding_ifc.Embedded_phonons class method) from_phonopy_phonons() (abipy.lumi.lineshape.Lineshape class method) from_phwork() (abipy.flowtk.works.ConducWork class method) from_pmg_bs() (abipy.dfpt.phonons.PhononBands class method) from_pymatgen() (abipy.electrons.ebands.ElectronBands class method) from_qe_input() (abipy.dynamics.analyzer.MdAnalyzer class method) from_qtype_and_id() (abipy.flowtk.qjobs.QueueJob static method) from_relax_file() (abipy.lumi.deltaSCF.DeltaSCF class method) from_relax_input() (abipy.flowtk.zsisa.ThermalRelaxWork class method) from_scf_input() (abipy.flowtk.dfpt_works.ElasticWork class method) (abipy.flowtk.effmass_works.EffMassAutoDFPTWork class method) (abipy.flowtk.effmass_works.EffMassDFPTWork class method) (abipy.flowtk.effmass_works.EffMassLineWork class method) (abipy.flowtk.effmass_works.FrohlichZPRFlow class method) (abipy.flowtk.eph_flows.EphPotFlow class method) (abipy.flowtk.eph_flows.GkqPathFlow class method) (abipy.flowtk.gs_works.EosWork class method) (abipy.flowtk.gwr_works.DirectDiagoWork class method) (abipy.flowtk.gwr_works.GWRChiCompareWork class method) (abipy.flowtk.vzsisa.VzsisaFlow class method) (abipy.flowtk.vzsisa.VzsisaWork class method) (abipy.flowtk.works.BandStructureWork class method) (abipy.flowtk.works.PhononWork class method) (abipy.flowtk.zsisa.ZsisaFlow class method) (abipy.flowtk.zsisa.ZsisaWork class method) from_scf_input_ntaus() (abipy.flowtk.gwr_works.GWRRPAConvWork class method) from_scf_inputs() (abipy.flowtk.lumi_works.LumiWork class method) (abipy.flowtk.lumi_works.LumiWork_relaxations class method) (abipy.flowtk.lumi_works.LumiWorkFromRelax class method) from_scf_task() (abipy.flowtk.dfpt_works.NscfDdksWork class method) (abipy.flowtk.works.BecWork class method) (abipy.flowtk.works.DteWork class method) (abipy.flowtk.works.PhononWfkqWork class method) (abipy.flowtk.works.PhononWork class method) from_stream() (abipy.flowtk.abiinspect.Relaxation class method) (abipy.flowtk.abiinspect.ScfCycle class method) from_string() (abipy.abio.abivars.AbinitInputFile class method) (abipy.core.atom.AtomicConfiguration class method) (abipy.dfpt.ddb.DdbFile class method) (abipy.flowtk.nodes.Status class method) (abipy.flowtk.qjobs.JobStatus class method) (abipy.flowtk.tasks.TaskManager class method) (abipy.ml.aseml.CORRALGO class method) (abipy.ppcodes.ppgen.Status class method) from_structure() (abipy.core.symmetries.AbinitSpaceGroup class method) from_top() (abipy.ml.extxyz_generator.ExtxyzIOWriter class method) from_top_and_json_basename() (abipy.abio.robots.Robot class method) from_top_gsr() (abipy.ml.extxyz_generator.ExtxyzIOWriter class method) from_top_vasprun() (abipy.ml.extxyz_generator.ExtxyzIOWriter class method) from_topdir() (abipy.ml.relax_scanner.RelaxScannerAnalyzer class method) from_traj() (abipy.ml.relax_scanner.Entry class method) from_traj_inds() (abipy.ml.aseml.AseResults class method) from_user_config() (abipy.flowtk.tasks.TaskManager class method) from_varpeq() (abipy.eph.varpeq.Polaron class method) from_vaspruns() (abipy.dynamics.analyzer.MdAnalyzer class method) (abipy.dynamics.analyzer.MultiMdAnalyzer class method) from_vertices_and_names() (abipy.core.kpoints.Kpath class method) from_vloc_rcut_list() (abipy.electrons.psps.PspsRobot class method) from_wfk_filepath() (abipy.flowtk.gw_works.ScreeningWork class method) from_wfkpath() (abipy.electrons.fold2bloch.Fold2BlochNcfile class method) from_work() (abipy.abio.robots.Robot class method) fromfftmesh() (abipy.core.gsphere.GSphere method) frozen_2phonon() (abipy.core.structure.Structure method) frozen_phonon() (abipy.core.structure.Structure method) FrozenPhonon (class in abipy.dfpt.frozen_phonons) FrozenPhononMl (class in abipy.ml.aseml) fs_viewer (abipy.panels.core.PanelWithElectronBands attribute) FULLBZ (abipy.abio.enums.WFK_TASK attribute) func_name (abipy.flowtk.nodes.HistoryRecord attribute) Function1D (class in abipy.core.func1d) functions_pair() (abipy.electrons.lobster.CoxpFile method) functions_pair_lorbitals() (abipy.electrons.lobster.CoxpFile method) functions_pair_morbitals() (abipy.electrons.lobster.CoxpFile method) fundamental_gaps (abipy.electrons.ebands.ElectronBands property) FWHM_1D() (abipy.lumi.deltaSCF.DeltaSCF method)

G

G0EW (abipy.abio.enums.GWR_TASK attribute) G0V (abipy.abio.enums.GWR_TASK attribute) G0W0 (abipy.abio.enums.GWR_TASK attribute) g0w0_convergence_inputs() (in module abipy.abio.factories) g0w0_flow() (in module abipy.flowtk.flows) g0w0_with_ppmodel_inputs() (in module abipy.abio.factories) G0W0WithQptdmFlow (class in abipy.flowtk.flows) G0W0Work (class in abipy.flowtk.works) g2 (abipy.eph.gstore.Gqk attribute) G_t() (abipy.lumi.lineshape.Lineshape method) gamma() (abipy.core.kpoints.Kpoint class method) GAMMA_GW (abipy.abio.enums.GWR_TASK attribute) GarbageCollector (class in abipy.flowtk.nodes) gaussian() (in module abipy.tools.numtools) gaussians_dos() (in module abipy.electrons.fatbands) gc (abipy.flowtk.nodes.Node property) gen_id() (in module abipy.panels.core) generate() (abipy.abio.inputs.AbstractInput method) generate_born_deriv() (in module abipy.dfpt.converters) GenericDataFilePlotter (class in abipy.tools.plotting) GenericDataFilesPlotter (class in abipy.tools.plotting) get_2nd_ord_block_string() (in module abipy.dfpt.ddb) get_2nd_ord_dict() (abipy.dfpt.ddb.DdbFile method) get_a2_interpolator_state() (abipy.eph.varpeq.Polaron method) get_a2f_qsamp() (abipy.eph.a2f.A2fFile method) get_a2f_view() (abipy.panels.a2f.A2fFilePanel method) get_a2ftr_qsamp() (abipy.eph.a2f.A2fFile method) get_abc() (abipy.dfpt.qha.AbstractQHA method) (abipy.dfpt.vzsisa.Vzsisa method) get_abi_string() (abipy.core.structure.Structure method) get_abifile_from_file_input() (abipy.panels.core.AbipyParameterized static method) get_abinb_workdir() (in module abipy.core.globals) get_abinit_template_cls_kwds() (abipy.panels.core.AbipyParameterized method) (in module abipy.panels.core) get_abinit_variables() (in module abipy.abio.abivars_db) get_abinitio_results() (abipy.ml.aseml.MlValidateWithAbinitio method) get_acoustic_debye_temp() (abipy.dfpt.phonons.PhononDos method) get_alert_data_transfer() (abipy.panels.core.AbipyParameterized static method) get_aligned_energies_traj() (abipy.ml.aseml.AseResultsComparator method) get_all_d2de_scf_cycles() (abipy.abio.outputs.AbinitOutputFile method) get_all_gs_scf_cycles() (abipy.abio.outputs.AbinitOutputFile method) get_all_kindices() (abipy.core.kpoints.KpointList method) get_all_outdata_files_with_ext() (abipy.flowtk.works.Work method) get_all_status() (abipy.flowtk.works.Work method) get_allvars() (abipy.abio.outputs.OutNcFile method) get_anaddb_variables() (in module abipy.abio.abivars_db) get_and_write_eosdata() (abipy.flowtk.gs_works.EosWork method) get_angles() (abipy.dfpt.qha.AbstractQHA method) (abipy.dfpt.vzsisa.Vzsisa method) get_arrhenius_nmtuples() (abipy.dynamics.analyzer.DiffusionDataList method) get_asr_dipdip_view() (abipy.panels.ddb.DdbFilePanel method) get_atomic_levels_df() (abipy.ppcodes.oncv_parser.OncvParser method) get_atoms() (in module abipy.ml.aseml) get_atoms_with_frac_coords() (abipy.ml.relax_scanner.RelaxScanner method) get_available() (abipy.iotools.visualizer.Visualizer class method) get_ax3d_fig_plt() (in module abipy.tools.plotting) get_ax_fig_plt() (in module abipy.tools.plotting) get_axarray_fig_plt() (in module abipy.tools.plotting) get_b2_interpolator_state() (abipy.eph.varpeq.Polaron method) get_baserobot_code_cells() (abipy.abio.robots.Robot method) get_becs_view() (abipy.panels.ddb.DdbFilePanel method) get_block_for_qpoint() (abipy.dfpt.ddb.DdbFile method) get_BORN_lines() (in module abipy.dfpt.converters) get_bz2ibz_bz_points() (abipy.electrons.ebands.ElectronBands method) get_calculator() (abipy.ml.aseml.CalcBuilder method) get_cart_coords() (abipy.core.kpoints.KpointList method) get_chemview() (abipy.core.structure.Structure method) get_chi2_latex_label() (abipy.electrons.optic.OpticNcFile method) get_children() (abipy.flowtk.nodes.Node method) get_cif_string() (abipy.dfpt.msqdos.MsqDos method) get_cluster_graph() (abipy.flowtk.utils.Dirviz method) get_coarse() (abipy.dfpt.ddb.DdbFile method) get_collinear_mag() (abipy.electrons.ebands.ElectronBands method) get_compare_params_widgets() (abipy.panels.core.BaseRobotPanel method) get_completed_job_info() (in module abipy.flowtk.qutils) get_computed_entry() (abipy.electrons.gsr.GsrFile method) get_conductivity_data() (abipy.dynamics.analyzer.ArrheniusEntry method) get_conventional_standard_structure() (abipy.core.structure.Structure method) get_convergence_analyzer() (abipy.abio.robots.Robot method) get_coords_dataframe() (abipy.abio.robots.Robot method) get_crystaltk_view() (abipy.core.structure.Structure method) get_cumulant_skb() (abipy.eph.cumulant.CumulantEPhFile method) get_custodian_template() (in module abipy.flowtk.qutils) get_cv() (abipy.dfpt.phonons.PhononDos method) (in module abipy.dfpt.qha) get_cycles_view() (abipy.panels.outputs.AbinitOutputFilePanel method) get_dataframe() (abipy.abio.outputs.AboRobot method) (abipy.dfpt.anaddbnc.AnaddbNcRobot method) (abipy.dfpt.msqdos.MsqDos method) (abipy.dfpt.phonons.PhononBands method) (abipy.dfpt.vsound.SoundVelocity method) (abipy.dynamics.analyzer.DiffusionDataList method) (abipy.dynamics.hist.HistRobot method) (abipy.electrons.ebands.ElectronBands method) (abipy.electrons.gw.SigresFile method) (abipy.electrons.gw.SigresRobot method) (abipy.eph.a2f.A2fRobot method) (abipy.eph.gstore.Gqk method) (abipy.eph.sigeph.QpTempState method) (abipy.eph.sigeph.SigEPhFile method) (abipy.eph.sigeph.SigEPhRobot method) (abipy.flowtk.flows.Flow method) (abipy.flowtk.launcher.MultiFlowScheduler method) (abipy.flowtk.tasks.ParalHints method) (abipy.flowtk.works.Work method) (abipy.lumi.deltaSCF.DeltaSCF method) (abipy.wannier90.abiwan.AbiwanRobot method) get_dataframe_at_qpoint() (abipy.dfpt.ddb.DdbRobot method) get_dataframe_atoms() (abipy.lumi.deltaSCF.DeltaSCF method) get_dataframe_sk() (abipy.electrons.gw.SigresFile method) (abipy.eph.sigeph.SigEPhFile method) (abipy.eph.sigeph.SigEPhRobot method) get_dataframe_species() (abipy.lumi.deltaSCF.DeltaSCF method) get_dataframe_with_accuracies() (abipy.electrons.effmass_analyzer.Segment method) get_debug_view() (abipy.panels.nodes.NodeParameterized method) get_default() (abipy.abio.inputs.OpticInput method) get_dict4pandas() (abipy.core.atom.NlkState method) (abipy.core.structure.Structure method) (abipy.dfpt.phonons.PhononBands method) (abipy.electrons.ebands.ElectronBands method) (abipy.ml.aseml.AseResults method) (abipy.ml.relax_scanner.Pair method) get_dict_per_atom() (abipy.lumi.deltaSCF.DeltaSCF method) get_dict_per_specie() (abipy.lumi.deltaSCF.DeltaSCF method) get_dict_results() (abipy.lumi.deltaSCF.DeltaSCF method) get_differences() (abipy.abio.abivars.AbinitInputFile method) get_diffusion_data() (abipy.dynamics.analyzer.ArrheniusEntry method) get_diffusion_with_sigma() (abipy.dynamics.analyzer.Msdtt0 method) get_dims_and_vars_view() (abipy.panels.nodes.NodeParameterized method) get_dims_dataframe() (abipy.abio.outputs.AboRobot method) (abipy.core.mixins.AbinitNcFile method) (abipy.flowtk.flows.Flow method) get_dims_spginfo_dataframe() (abipy.abio.outputs.AbinitOutputFile method) get_dims_spginfo_dataset() (abipy.abio.outputs.AbinitOutputFile method) get_dirgaps_dataframe() (abipy.eph.sigeph.SigEPhFile method) (abipy.eph.sigeph.SigEPhRobot method) get_displacements_on_phonon_supercell() (in module abipy.lumi.lineshape) get_dm() (in module abipy.dfpt.converters) get_dos_integrator() (abipy.electrons.fatbands.FatBandsFile method) get_dos_vs_qmesh_view() (abipy.panels.ddb.DdbFilePanel method) get_dw_symbol() (abipy.dynamics.analyzer.MdAnalyzer method) get_dyn_mat_eigenvec() (in module abipy.dfpt.phtk) get_e0() (abipy.electrons.ebands.ElectronBands method) (abipy.electrons.ebands.ElectronDos method) get_e0mesh() (abipy.eph.sigeph.QpTempList method) get_ebands3d() (abipy.electrons.ebands.ElectronBands method) get_ebands_frame() (abipy.electrons.ebands.ElectronBandsPlotter method) get_ebands_from_file_input() (abipy.panels.core.AbipyParameterized method) get_ebands_kmesh() (abipy.panels.core.PanelWithElectronBands method) get_ebands_kpath() (abipy.panels.core.PanelWithElectronBands method) get_ebands_params() (abipy.core.mixins.Has_ElectronBands method) get_ebands_plotter() (abipy.eph.sigeph.TdepElectronBands method) get_ebands_plotter_widgets() (abipy.panels.core.PanelWithEbandsRobot method) get_edge_state() (abipy.electrons.ebands.ElectronBands method) get_edos() (abipy.core.mixins.Has_ElectronBands method) (abipy.core.skw.ElectronInterpolator method) (abipy.electrons.ebands.ElectronBands method) get_edos_plotter() (abipy.eph.sigeph.TdepElectronBands method) get_edos_plotter_widgets() (abipy.panels.core.PanelWithEbandsRobot method) get_effmass_analyzer() (abipy.electrons.ebands.ElectronBands method) get_effmass_line() (abipy.electrons.ebands.ElectronBands method) get_effmass_view() (abipy.panels.core.PanelWithElectronBands method) get_ejdos() (abipy.electrons.ebands.ElectronBands method) get_elastic_dataframe() (abipy.dfpt.anaddbnc.AnaddbNcRobot method) get_elastic_properties_dataframe() (abipy.dfpt.elastic.ElasticData method) get_elastic_tensor_dataframe() (abipy.dfpt.elastic.ElasticData method) get_elastic_view() (abipy.panels.ddb.DdbFilePanel method) get_elastic_voigt_dataframe() (abipy.dfpt.elastic.ElasticData method) get_elate_html() (abipy.dfpt.elastic.MyElasticTensor method) get_energy_step() (in module abipy.ml.tools) get_entropy() (abipy.dfpt.phonons.PhononDos method) (in module abipy.dfpt.qha) get_eps0_view() (abipy.panels.ddb.DdbFilePanel method) get_epsinf() (abipy.panels.ddb.DdbFilePanel method) get_errs_view() (abipy.panels.tasks.TaskPanel method) get_event_handler_classes() (in module abipy.flowtk.events) get_events_view() (abipy.panels.nodes.NodeParameterized method) get_fd_emass_d2() (abipy.electrons.effmass_analyzer.Segment method) get_field_itemp() (abipy.eph.sigeph.QpTempList method) get_fields() (abipy.electrons.gw.QPState class method) (abipy.eph.sigeph.QpTempState class method) get_fields_for_plot() (abipy.electrons.gw.QPState class method) (abipy.eph.sigeph.QpTempState class method) get_fig_mlab() (in module abipy.display.mvtk) get_fig_plotly() (in module abipy.tools.plotting) get_figs_plotly() (in module abipy.tools.plotting) get_fileinput_section() (abipy.panels.core.AbipyParameterized static method) get_filepaths_and_exts() (abipy.flowtk.nodes.Dependency method) get_files_in_dir_view() (abipy.panels.nodes.NodeParameterized method) get_final_results_df() (abipy.eph.varpeq.Polaron method) (abipy.eph.varpeq.VarpeqRobot method) get_final_structure() (abipy.flowtk.tasks.RelaxTask method) get_fit_gaps_vs_ecuteps() (abipy.electrons.gw.SigresRobot method) get_flow_and_status_by_nodeid() (abipy.flowtk.launcher.MultiFlowScheduler method) get_forces_dataframe() (abipy.ml.aseml.AseResultsComparator method) get_forces_on_phonon_supercell() (in module abipy.lumi.lineshape) get_free_energy() (abipy.dfpt.phonons.PhononDos method) (in module abipy.dfpt.qha) get_frozen_phonons() (abipy.dfpt.phonons.PhononBands method) get_fstats() (abipy.ml.aseml.AseResults method) (in module abipy.ml.aseml) get_fstats_dict() (abipy.dynamics.hist.HistFile method) get_g2q_interpolator_kpoint() (abipy.eph.gstore.Gqk method) get_g_qpt_kpt() (abipy.eph.gstore.Gqk method) get_gamma_freq_with_vec_abipy_fmt() (abipy.embedding.embedding_ifc.Embedded_phonons method) get_gaps_string() (abipy.electrons.ebands.ElectronBands method) get_gdf_at_qpt_kpt() (abipy.eph.gstore.Gqk method) get_gnuk_average_spin() (abipy.eph.gpath.GpathReader method) get_gnuq_average_spin() (abipy.eph.gpath.GpathReader method) get_graphviz() (abipy.flowtk.flows.Flow method) get_graphviz_dirtree() (abipy.flowtk.nodes.Node method) get_graphviz_view() (abipy.panels.nodes.NodeParameterized method) get_gs_input() (abipy.panels.structure.StructurePanel method) get_h1mat() (abipy.waves.wfkfile.WfkFile method) get_highsym_datataframe() (abipy.core.kpoints.KpointList method) get_history_view() (abipy.panels.nodes.NodeParameterized method) get_ifc_cartesian() (abipy.dfpt.ifc.InteratomicForceConstants method) get_ifc_local() (abipy.dfpt.ifc.InteratomicForceConstants method) get_ifcs_view() (abipy.panels.ddb.DdbFilePanel method) get_ifermi_dense_bs() (abipy.electrons.ebands.ElectronBands method) get_ifermi_fs() (abipy.electrons.ebands.ElectronBands method) get_ifermi_view() (abipy.panels.core.PanelWithElectronBands method) get_incoming_flows() (abipy.flowtk.launcher.MultiFlowScheduler method) get_info() (abipy.flowtk.qjobs.PbsProJob method) (abipy.flowtk.qjobs.QueueJob method) (abipy.flowtk.qjobs.SlurmJob method) get_input() (in module abipy.tools.iotools) get_input_str() (abipy.ppcodes.base_parser.BaseParser method) (abipy.ppcodes.oncv_parser.OncvParser method) get_input_string() (abipy.core.mixins.AbinitNcFile method) get_inputs_view() (abipy.panels.tasks.TaskPanel method) get_installed_nn_names() (in module abipy.ml.aseml) get_internal_energy() (abipy.dfpt.phonons.PhononDos method) get_interpolated_ebands_plotter() (abipy.wannier90.abiwan.AbiwanRobot method) get_interpolator() (abipy.waves.pwwave.PWWaveFunction method) get_intr2j0() (abipy.core.atom.RadialFunction method) get_it_ts() (abipy.dynamics.analyzer.MdAnalyzer method) get_jsmol_view() (abipy.core.structure.Structure method) get_json_doc() (abipy.dfpt.msqdos.MsqDos method) get_json_status() (abipy.flowtk.launcher.MultiFlowScheduler method) get_k2kqg_map() (abipy.core.kpoints.KpointList method) get_kcoords_from_names() (abipy.core.structure.Structure method) get_key_pairs() (abipy.ml.aseml.AseResultsComparator method) get_kpath() (abipy.panels.structure.StructurePanel method) get_kpath_input_string() (abipy.core.structure.Structure method) get_kpoints_and_band_range_for_edges() (abipy.electrons.ebands.ElectronBands method) get_label_files_str() (abipy.abio.robots.Robot method) get_labelstyle_from_spin_pair() (abipy.electrons.lobster.CoxpFile method) get_labelstyle_from_spin_pair_orbs() (abipy.electrons.lobster.CoxpFile method) get_lattice_dataframe() (abipy.abio.robots.Robot method) get_lifetimes_boltztrap() (abipy.eph.sigeph.SigEPhFile method) get_linewidth_dos() (abipy.eph.sigeph.SigEPhFile method) get_linfit_results() (abipy.dynamics.analyzer.Msdtt0 method) get_linopt_latex_label() (abipy.electrons.optic.OpticNcFile static method) get_lnlist_for_type() (abipy.electrons.psps.PspsReader method) get_longitudinal_fraction() (abipy.dfpt.phonons.PhononBands method) get_lorentz_intensity() (abipy.dfpt.raman.Raman method) get_main_text_outs_view() (abipy.panels.tasks.TaskPanel method) get_marker() (abipy.electrons.gw.SigresFile method) get_matching_dSCF_phonon_spcell() (in module abipy.lumi.lineshape) get_max_nprocs() (in module abipy.tools.parallel) get_maxfreq_mode() (abipy.dfpt.phonons.PhononBands method) get_mcmillan_tc() (abipy.eph.a2f.A2f method) get_mdf() (abipy.electrons.bse.MdfFile method) get_mdf_robot() (abipy.flowtk.works.BseMdfWork method) get_message() (abipy.flowtk.nodes.HistoryRecord method)

get_min_max_temp() (abipy.dynamics.analyzer.ArrheniusPlotter method) get_minfreq_mode() (abipy.dfpt.phonons.PhononBands method) get_mobility_mu() (abipy.eph.rta.RtaFile method) (abipy.eph.transportfile.TransportFile method) get_modes_intensities() (abipy.dfpt.raman.Raman method) get_moment() (abipy.eph.a2f.A2f method) get_moment_nu() (abipy.eph.a2f.A2f method) get_mongo_info() (abipy.flowtk.flows.Flow method) get_mprester() (in module abipy.core.restapi) get_msdtt0_symbol_tmax() (abipy.dynamics.analyzer.MdAnalyzer method) (abipy.dynamics.analyzer.MultiMdAnalyzer method) get_msq_tmesh() (abipy.dfpt.msqdos.MsqDos method) get_mustar_from_tc() (abipy.eph.a2f.A2f method) get_ncfile_view() (abipy.core.mixins.AbinitNcFile method) (abipy.panels.core.NcFileViewer method) get_nelect() (abipy.core.fields.Density method) get_newnode_id() (in module abipy.flowtk.nodes) get_ngkpt_shiftk() (abipy.abio.inputs.AbinitInput method) get_ngl_view() (abipy.core.structure.Structure method) get_njobs_in_queue() (abipy.flowtk.flows.Flow method) (abipy.flowtk.tasks.TaskManager method) get_nodes() (abipy.flowtk.qjobs.QueueJob method) get_ordered_with_policy() (abipy.flowtk.tasks.ParalHints method) get_oscillator_dataframe() (abipy.dfpt.ddb.DielectricTensorGenerator method) get_outfile_view() (abipy.panels.outputs.AbinitOutputFilePanel method) get_output_file() (abipy.flowtk.tasks.AbinitTask method) get_oxi_state_decorated() (abipy.core.structure.Structure method) get_panel() (abipy.abio.outputs.AbinitOutputFile method) (abipy.core.structure.Structure method) (abipy.dfpt.ddb.DdbFile method) (abipy.dfpt.ddb.DdbRobot method) (abipy.dfpt.phonons.PhononBandsPlotter method) (abipy.dynamics.hist.HistFile method) (abipy.electrons.fatbands.FatBandsFile method) (abipy.electrons.gsr.GsrFile method) (abipy.eph.a2f.A2fFile method) (abipy.eph.sigeph.SigEPhFile method) (abipy.flowtk.flows.Flow method) (abipy.flowtk.tasks.AbinitTask method) (abipy.flowtk.works.Work method) (abipy.panels.a2f.A2fFilePanel method) (abipy.panels.ddb.CompareDdbWithMP method) (abipy.panels.ddb.DdbFilePanel method) (abipy.panels.ddb.DdbPanelWithFileInput method) (abipy.panels.ddb.DdbRobotPanel method) (abipy.panels.ddb.PanelWithFileInput method) (abipy.panels.ddb.RobotWithFileInput method) (abipy.panels.fatbands.FatBandsFilePanel method) (abipy.panels.flows.FlowPanel method) (abipy.panels.gsr.GsrFilePanel method) (abipy.panels.gsr.GsrRobotPanel method) (abipy.panels.hist.HistFilePanel method) (abipy.panels.nodes.NodeParameterized method) (abipy.panels.outputs.AbinitOutputFilePanel method) (abipy.panels.outputs.AbinitOutputFilePanelWithFileInput method) (abipy.panels.phonons.PhononBandsPlotterPanel method) (abipy.panels.sigeph.SigEPhFilePanel method) (abipy.panels.structure.InputFileGenerator method) (abipy.panels.structure.StructurePanel method) (abipy.panels.tasks.TaskPanel method) get_params_dataframe() (abipy.abio.robots.Robot method) (abipy.dynamics.analyzer.MultiMdAnalyzer method) get_params_dict() (abipy.dynamics.analyzer.MdAnalyzer method) get_parents() (abipy.flowtk.nodes.Node method) get_path() (abipy.ml.aseml.MlBase method) get_peaks() (abipy.core.atom.RadialFunction method) get_peaks_df() (abipy.ppcodes.oncv_parser.OncvParser method) get_phbands_frame() (abipy.dfpt.phonons.PhononBandsPlotter method) get_phbands_params() (abipy.core.mixins.Has_PhononBands method) get_phbands_view() (abipy.panels.ddb.DdbFilePanel method) get_phdos() (abipy.dfpt.phonons.PhononBands method) get_phdos_plotter() (abipy.dfpt.vzsisa.Vzsisa method) get_phframe() (abipy.dfpt.phonons.PhbstFile method) get_phfreqs_stats_dict() (abipy.dfpt.phonons.PhononBands method) get_phmode() (abipy.dfpt.phonons.PhbstFile method) get_phonopy() (in module abipy.ml.ml_phonopy) get_phonopy_atoms() (abipy.core.structure.Structure method) get_phonopy_qha() (abipy.dfpt.qha.AbstractQHA method) get_piezo_voigt_dataframe() (abipy.dfpt.elastic.ElasticData method) get_piezoelectric_tensor_dataframe() (abipy.dfpt.elastic.ElasticData method) get_plot_ebands_view() (abipy.panels.core.PanelWithElectronBands method) get_plot_edos_view() (abipy.panels.core.PanelWithElectronBands method) get_plot_ifc() (abipy.dfpt.ifc.InteratomicForceConstants method) get_plotter() (abipy.dfpt.gruneisen.GrunsNcFile method) (abipy.ppcodes.oncv_parser.OncvParser method) get_plotter_with() (abipy.electrons.ebands.ElectronBands method) get_pn_serve_kwargs() (in module abipy.tools.cli_parsers) get_points_from_ebands() (abipy.electrons.gw.SigresFile method) get_powder_intensity() (abipy.dfpt.raman.Raman method) get_powder_lorentz_intensity() (abipy.dfpt.raman.Raman method) get_psp8_str() (abipy.ppcodes.oncv_parser.OncvParser method) get_pyscript() (abipy.abio.robots.Robot method) get_qp_array() (abipy.eph.sigeph.SigEPhFile method) get_qpcorr() (abipy.electrons.gw.SigresFile method) get_qpgap() (abipy.electrons.gw.SigresFile method) get_qpgaps_dataframe() (abipy.electrons.gw.SigresRobot method) get_qplist() (abipy.electrons.gw.SigresFile method) get_quadrupole_raw_dataframe() (abipy.dfpt.ddb.DdbFile method) get_quadrupoles_view() (abipy.panels.ddb.DdbFilePanel method) get_relaxation_analyzer() (abipy.dynamics.hist.HistFile method) get_results() (abipy.flowtk.flows.Flow method) (abipy.flowtk.nodes.FileNode method) (abipy.ppcodes.base_parser.BaseParser method) (abipy.ppcodes.oncv_parser.OncvParser method) get_sacct_info() (in module abipy.flowtk.qutils) get_same_tmesh() (abipy.eph.rta.RtaRobot method) get_sampling() (abipy.core.skw.ElectronInterpolator method) get_scissors_builder() (abipy.flowtk.tasks.SigmaTask method) get_script_str() (abipy.flowtk.launcher.ScriptEditor method) get_sigeph_skb() (abipy.eph.sigeph.SigEPhFile method) get_sigma_berend() (abipy.dynamics.analyzer.Msdtt0 method) get_sigma_skb_kpoint() (abipy.eph.sigeph.SigmaPhReader method) get_simple_manager() (abipy.flowtk.tasks.TaskManager class method) get_size() (in module abipy.tools.devtools) get_skw_ebands_kpath() (abipy.panels.core.PanelWithElectronBands method) get_skw_view() (abipy.panels.core.PanelWithElectronBands method) get_slurm_template() (in module abipy.flowtk.qutils) get_smallest_supercell() (abipy.core.structure.Structure method) get_software_stack() (abipy.panels.core.AbipyParameterized static method) get_sorted_structure_z() (abipy.core.structure.Structure method) get_spectral_functions() (abipy.electrons.fold2bloch.Fold2BlochNcfile method) get_spglib_hall_number() (abipy.core.symmetries.AbinitSpaceGroup method) get_spilling() (abipy.electrons.fatbands.FatBandsFile method) get_sqdt_iatom() (abipy.dynamics.analyzer.MdAnalyzer method) get_sqdt_symbol() (abipy.dynamics.analyzer.MdAnalyzer method) get_sql_rows_with_node_ids() (abipy.flowtk.launcher.MultiFlowScheduler method) get_stark() (abipy.core.skw.SkwInterpolator method) get_stark_dk1() (abipy.core.skw.SkwInterpolator method) get_stark_dk2() (abipy.core.skw.SkwInterpolator method) get_stat() (abipy.flowtk.utils.File method) get_stats() (abipy.flowtk.qjobs.QueueJob method) (abipy.flowtk.qjobs.SlurmJob method) get_status_view() (abipy.panels.nodes.NodeParameterized method) get_stress_dataframe() (abipy.ml.aseml.AseResultsComparator method) get_string() (abipy.dfpt.ddb.DdbFile method) get_structure_dataframes() (abipy.abio.robots.Robot method) get_structure_info() (abipy.panels.core.PanelWithStructure method) (in module abipy.panels.core) get_structure_view() (abipy.panels.core.PanelWithStructure method) get_structure_with_two_frac_coords() (abipy.ml.relax_scanner.RelaxScanner method) get_structures_labels_from_file() (in module abipy.ml.tools) get_structures_labels_from_files() (in module abipy.ml.tools) get_summary_view_for_abiobj() (abipy.panels.core.AbipyParameterized method) get_supported_extensions() (abipy.abio.robots.Robot class method) get_symb2coords_dataframe() (abipy.core.structure.Structure method) get_symbol2coords() (abipy.core.structure.Structure method) get_symbol2indices() (abipy.core.structure.Structure method) get_t_for_vols() (abipy.dfpt.qha.AbstractQHA method) get_task_scfcycles() (abipy.flowtk.flows.Flow method) get_task_view() (abipy.panels.flows.FlowPanel method) get_template_cls_from_name() (abipy.panels.core.AbipyParameterized static method) (in module abipy.panels.core) get_template_from_tabs() (abipy.panels.core.AbipyParameterized method) get_tensor() (abipy.dfpt.elastic.ElasticData method) (abipy.electrons.bse.MdfFile method) get_tensor_rank2_dataframe() (abipy.core.site_symmetries.SiteSymmetries method) get_thermal_expansion_coeff() (abipy.dfpt.qha.AbstractQHA method) (abipy.dfpt.vzsisa.Vzsisa method) get_thermal_expansion_coeff_4th() (abipy.dfpt.vzsisa.Vzsisa method) get_thermodynamic_properties() (abipy.dfpt.qha.AbstractQHA method) (abipy.dfpt.qha.QHA method) (abipy.dfpt.qha.QHA3P method) (abipy.dfpt.qha.QHA3PF method) (abipy.dfpt.vzsisa.Vzsisa method) get_time_dataframe() (abipy.abio.outputs.AboRobot method) get_timer() (abipy.abio.outputs.AbinitTextFile method) get_title() (abipy.eph.varpeq.Polaron method) get_trans_vect() (abipy.core.structure.Structure method) get_unstable_modes() (abipy.dfpt.phonons.PhononBands method) get_upf_str() (abipy.ppcodes.oncv_parser.OncvParser method) get_value() (abipy.abio.variable.InputVariable method) get_vars_dataframe() (abipy.abio.inputs.MultiDataset method) (abipy.flowtk.nodes.Node method) get_vib_free_energies() (abipy.dfpt.qha.AbstractQHA method) (abipy.dfpt.qha.QHA method) (abipy.dfpt.qha.QHA3P method) (abipy.dfpt.qha.QHA3PF method) (abipy.dfpt.qha_2D.QHA_2D method) (abipy.dfpt.qha_general_stress.QHA_ZSISA method) (abipy.dfpt.vzsisa.Vzsisa method) get_voigt_dataframe() (abipy.dfpt.ddb.Becs method) (abipy.dfpt.elastic.ElasticData method) (abipy.dfpt.elastic.MyElasticTensor method) (abipy.dfpt.elastic.MyPiezoTensor method) get_voigt_stress() (abipy.ml.aseml.AseResults method) get_vol_at_t() (abipy.dfpt.qha.AbstractQHA method) get_vsound_view() (abipy.panels.ddb.DdbFilePanel method) get_w_symbol() (abipy.electrons.fatbands.FatBandsFile method) get_wave() (abipy.waves.wfkfile.WfkFile method) get_wl_atom() (abipy.electrons.fatbands.FatBandsFile method) get_wl_symbol() (abipy.electrons.fatbands.FatBandsFile method) get_workdir() (in module abipy.core.globals) get_wyckoff_dataframe() (abipy.core.site_symmetries.SiteSymmetries method) get_yvals_item_abifiles() (abipy.abio.robots.Robot static method) get_zero_point_energy() (in module abipy.dfpt.qha) getattr_alleq() (abipy.abio.robots.Robot method) getattrd() (in module abipy.tools.duck) getattrs_alleq() (abipy.abio.robots.Robot method) getsize() (abipy.flowtk.utils.File method) gkk_filepath (abipy.flowtk.tasks.AnaddbTask property) GKKPWork (class in abipy.flowtk.works) GkqPathFlow (class in abipy.flowtk.eph_flows) glob_nk (abipy.eph.gstore.Gqk attribute) glob_nq (abipy.eph.gstore.Gqk attribute) glr_frohlich() (in module abipy.eph.common) gmods() (abipy.core.mesh3d.Mesh3D method) gnuplot() (abipy.ppcodes.oncv_parser.OncvParser method) GpathFile (class in abipy.eph.gpath) GpathReader (class in abipy.eph.gpath) GpathRobot (class in abipy.eph.gpath) Gqk (class in abipy.eph.gstore) gqk_spin() (abipy.eph.gstore.GstoreFile method) graphviz_imshow() (abipy.flowtk.flows.Flow method) GrepResults (class in abipy.ppcodes.oncv_parser) grid (abipy.core.kpoints.Ktables attribute) gridfs_files (abipy.flowtk.nodes.NodeResults property) GridFsFile (class in abipy.flowtk.nodes) gridplot() (abipy.dfpt.phonons.PhononBandsPlotter method) (abipy.dfpt.phonons.PhononDosPlotter method) (abipy.dynamics.hist.HistRobot method) (abipy.electrons.ebands.ElectronBandsPlotter method) (abipy.electrons.ebands.ElectronDosPlotter method) gridplot_a2f() (abipy.eph.a2f.A2fRobot method) gridplot_with_hue() (abipy.dfpt.phonons.PhononBandsPlotter method) gridplotly() (abipy.dfpt.phonons.PhononBandsPlotter method) (abipy.dfpt.phonons.PhononDosPlotter method) (abipy.electrons.ebands.ElectronBandsPlotter method) (abipy.electrons.ebands.ElectronDosPlotter method) GroundStateScfCycle (class in abipy.flowtk.abiinspect) group_and_sortby() (abipy.abio.robots.Robot method) groupby_status() (abipy.flowtk.flows.Flow method) (abipy.flowtk.launcher.MultiFlowScheduler method) groupby_task_class() (abipy.flowtk.flows.Flow method) groupby_work_class() (abipy.flowtk.flows.Flow method) grouper() (in module abipy.tools.numtools) grun_vals_finite_differences() (abipy.dfpt.gruneisen.GrunsNcFile method) GruneisenWork (class in abipy.flowtk.gruneisen) GrunsNcFile (class in abipy.dfpt.gruneisen) GrunsReader (class in abipy.dfpt.gruneisen) gs_input() (in module abipy.abio.factories) GsMl (class in abipy.ml.aseml) GSphere (class in abipy.core.gsphere) gspheres (abipy.waves.wfkfile.WfkFile property) GsrFile (class in abipy.electrons.gsr) GsrFilePanel (class in abipy.panels.gsr) GsrRobotPanel (class in abipy.panels.gsr) GSTATE (abipy.abio.enums.RUNL attribute) gstore (abipy.eph.gstore.Gqk attribute) GstoreFile (class in abipy.eph.gstore) GstoreReader (class in abipy.eph.gstore) GstoreRobot (class in abipy.eph.gstore) guessed_ngqpt() (abipy.dfpt.ddb.DdbFile method) gvals (abipy.eph.gstore.Gqk attribute) gvals_qibz() (abipy.dfpt.gruneisen.GrunsNcFile method) gvals_qibz_finite_differences() (abipy.dfpt.gruneisen.GrunsNcFile method) gvecs (abipy.core.gsphere.GSphere property) gvecs() (abipy.core.mesh3d.Mesh3D method) GWLS (abipy.abio.enums.RUNL attribute) gwnlf_mdf() (abipy.electrons.bse.MdfFile method) GWR (abipy.abio.enums.RUNL attribute) gwr_path (abipy.flowtk.tasks.GwrTask property) GWR_TASK (class in abipy.abio.enums) GWRChiCompareWork (class in abipy.flowtk.gwr_works) GWRRPAConvWork (class in abipy.flowtk.gwr_works) GWRSigmaConvWork (class in abipy.flowtk.gwr_works) GwrTask (class in abipy.flowtk.tasks)

H

h() (abipy.core.func1d.Function1D method) handle_flow_exception() (abipy.flowtk.launcher.MultiFlowScheduler method) handle_input_event() (abipy.flowtk.events.DilatmxErrorHandler method) handle_task_event() (abipy.flowtk.events.DilatmxErrorHandler method) handle_timeout() (abipy.tools.context_managers.Timeout method) handle_wt() (abipy.panels.flows.FlowMultiPageApp method) has_a2ftr() (abipy.eph.a2f.A2fFile method) has_abi_spacegroup (abipy.core.structure.Structure property) has_abiext() (abipy.flowtk.utils.Directory method) has_at_least_one_atomic_perturbation() (abipy.dfpt.ddb.DdbFile method) has_bec_terms() (abipy.dfpt.ddb.DdbFile method) has_bzmesh() (abipy.electrons.ebands.ElectronBands method) has_bzpath() (abipy.electrons.ebands.ElectronBands method) has_chrooted (abipy.flowtk.flows.Flow property) has_different_structures() (abipy.abio.robots.Robot method) (abipy.flowtk.works.Work method) has_direction() (abipy.dfpt.phtk.NonAnalyticalPh method) has_elastic_data (abipy.dfpt.anaddbnc.AnaddbNcRobot property) has_elastic_data() (abipy.dfpt.anaddbnc.AnaddbNcFile method) Has_ElectronBands (class in abipy.core.mixins) has_eliashberg_function() (abipy.eph.sigeph.SigEPhFile method) has_epsinf_terms() (abipy.dfpt.ddb.DdbFile method) Has_Header (class in abipy.core.mixins) has_ibte() (abipy.eph.rta.RtaFile method) has_internalstrain_terms() (abipy.dfpt.ddb.DdbFile method) has_j (abipy.core.atom.QState property) has_kmesh() (abipy.eph.sigeph.TdepElectronBands method) has_kpath() (abipy.eph.sigeph.TdepElectronBands method) has_leo() (abipy.electrons.optic.OpticNcFile method) has_libxc (abipy.flowtk.tasks.AbinitBuild attribute) has_linewidths (abipy.dfpt.phonons.PhononBands property) (abipy.electrons.ebands.ElectronBands property) has_linopt() (abipy.electrons.optic.OpticNcFile method) has_lo_to_data() (abipy.dfpt.ddb.DdbFile method) has_metallic_scheme (abipy.electrons.ebands.ElectronBands property) has_mpi (abipy.flowtk.tasks.AbinitBuild attribute) has_mpiio (abipy.flowtk.tasks.AbinitBuild attribute) has_multi_structures() (abipy.abio.abivars.AbinitInputFile method) has_netcdf (abipy.flowtk.tasks.AbinitBuild attribute) has_node_failures (abipy.flowtk.qjobs.QueueJob property) has_omp (abipy.flowtk.tasks.AbinitBuild attribute) (abipy.flowtk.tasks.TaskManager property) Has_PhononBands (class in abipy.core.mixins) has_piezoelectric_data() (abipy.dfpt.anaddbnc.AnaddbNcFile method) has_piezoelectric_terms() (abipy.dfpt.ddb.DdbFile method) has_qpoint() (abipy.dfpt.ddb.DdbFile method) has_quadrupole_terms() (abipy.dfpt.ddb.DdbFile method) has_queue (abipy.flowtk.tasks.TaskManager property) has_remote_server (abipy.panels.core.AbipyParameterized attribute)

has_s (abipy.core.atom.QState property) has_same_final_structures (abipy.abio.outputs.AbinitOutputFile property) has_same_formula() (abipy.dfpt.phonons.PhononBandsPlotter method) has_same_initial_structures (abipy.abio.outputs.AbinitOutputFile property) has_same_mesh() (abipy.core.func1d.Function1D method) has_same_structures (abipy.abio.inputs.MultiDataset property) has_same_system() (abipy.dynamics.analyzer.MultiMdAnalyzer method) has_scattering_wfs (abipy.ppcodes.oncv_parser.OncvParser property) has_scheduler (abipy.flowtk.flows.Flow property) has_shg() (abipy.electrons.optic.OpticNcFile method) has_spectral_function (abipy.electrons.gw.SigresFile property) has_spectral_function() (abipy.eph.sigeph.SigEPhFile method) has_strain_terms() (abipy.dfpt.ddb.DdbFile method) Has_Structure (class in abipy.core.mixins) has_timerev (abipy.core.symmetries.AbinitSpaceGroup property) has_timrev() (abipy.electrons.ebands.ElectronBands method) has_vasp_inputs() (abipy.ml.relax_scanner.RelaxScannerAnalyzer method) has_zero_dynamical_quadrupoles() (abipy.core.structure.Structure method) hasattrd() (in module abipy.tools.duck) HasPickleIO (class in abipy.tools.serialization) HATCH (abipy.abio.robots.Robot attribute) have_disentangled_spin() (abipy.wannier90.abiwan.AbiwanFile method) HDIAGO (abipy.abio.enums.GWR_TASK attribute) HDIAGO_FULL (abipy.abio.enums.GWR_TASK attribute) hdr() (abipy.core.mixins.Has_Header method) header (abipy.dfpt.ddb.DdbFile property) hints() (abipy.ppcodes.oncv_parser.OncvParser method) hirshfeld() (abipy.abio.inputs.Cut3DInput class method) hirshfeld_from_fhi_path() (abipy.abio.inputs.Cut3DInput class method) HirshfeldCharges (class in abipy.electrons.charges) HistFile (class in abipy.dynamics.hist) HistFilePanel (class in abipy.panels.hist) history() (abipy.flowtk.abiinspect.Relaxation method) HistoryRecord (class in abipy.flowtk.nodes) histplot() (abipy.ml.aseml.AseMdLog method) (abipy.ml.relax_scanner.RelaxScannerAnalyzer method) HistReader (class in abipy.dynamics.hist) HistRobot (class in abipy.dynamics.hist) homo_sk() (abipy.electrons.ebands.ElectronBands method) homos (abipy.electrons.ebands.ElectronBands property) hsym_kpath() (abipy.core.structure.Structure method) hsym_kpoints() (abipy.core.structure.Structure method) hsym_stars() (abipy.core.structure.Structure method) html_link() (abipy.abio.inputs.OpticVar method) html_with_clipboard_btn() (abipy.panels.core.AbipyParameterized static method) HtmlDiff (class in abipy.tools.devtools) HTMLwithClipboardBtn (class in abipy.panels.core) HueGroup (class in abipy.abio.robots) hwan() (abipy.wannier90.abiwan.AbiwanFile method) HWanR (class in abipy.wannier90.abiwan)

I

i_closest_gridpoints() (abipy.core.mesh3d.Mesh3D method) iatoms_with_symbol() (abipy.dynamics.analyzer.MdAnalyzer method) ibz (abipy.core.kpoints.Ktables attribute) ibz2kcalc() (abipy.eph.sigeph.SigEPhFile method) ICoxpFile (class in abipy.electrons.lobster) idir_from_direction() (abipy.ml.aseml.AseResultsComparator method) idos() (abipy.dfpt.phonons.PhononDos method) ieta0() (abipy.dfpt.frozen_phonons.FrozenPhonon method) iexc (abipy.ppcodes.oncv_parser.OncvParser attribute) ifc (abipy.dfpt.anaddbnc.AnaddbNcFile attribute) ifc() (abipy.abio.inputs.AnaddbInput class method) (abipy.dfpt.anaddbnc.AnaddbNcFile method) ifc_cart_coord_ewald() (abipy.dfpt.ifc.InteratomicForceConstants method) ifc_local_coord() (abipy.dfpt.ifc.InteratomicForceConstants method) ifc_local_coord_ewald() (abipy.dfpt.ifc.InteratomicForceConstants method) ifc_local_coord_short_range() (abipy.dfpt.ifc.InteratomicForceConstants method) ifc_yscale (abipy.panels.ddb.PanelWithAnaddbParams attribute) ifermi_eref (abipy.panels.core.PanelWithElectronBands attribute) ifermi_interpolation_factor (abipy.panels.core.PanelWithElectronBands attribute) ifermi_offset_eV (abipy.panels.core.PanelWithElectronBands attribute) ifermi_plot_type (abipy.panels.core.PanelWithElectronBands attribute) ifermi_wigner_seitz (abipy.panels.core.PanelWithElectronBands attribute) ifermi_with_velocities (abipy.panels.core.PanelWithElectronBands attribute) ifft() (abipy.core.func1d.Function1D method) iflat() (in module abipy.tools.numtools) iflat_nodes() (abipy.flowtk.flows.Flow method) iflat_tasks() (abipy.flowtk.flows.Flow method) iflat_tasks_wti() (abipy.flowtk.flows.Flow method) ifromr() (abipy.core.atom.RadialFunction method) imag (abipy.core.func1d.Function1D property) imag_fan0 (abipy.eph.sigeph.QpTempState property) imag_qpe (abipy.electrons.gw.QPState property) imag_qpe() (abipy.eph.sigeph.QpTempState method) imag_sig0() (abipy.eph.sigeph.QpTempState method) in_notebook() (in module abipy.core.globals) in_spectator_mode (abipy.flowtk.nodes.Node property) increase_mem() (abipy.flowtk.tasks.TaskManager method) increase_ncpus() (abipy.flowtk.tasks.TaskManager method) increase_resources() (abipy.flowtk.tasks.TaskManager method) increase_time() (abipy.flowtk.tasks.TaskManager method) indent() (in module abipy.tools.decorators) index() (abipy.core.gsphere.GSphere method) (abipy.core.kpoints.KpointList method) index1 (abipy.ml.relax_scanner.Pair attribute) index2 (abipy.ml.relax_scanner.Pair attribute) index_direction() (abipy.dfpt.phtk.NonAnalyticalPh method) index_key() (abipy.dynamics.analyzer.ArrheniusPlotter method) index_tmax (abipy.dynamics.analyzer.Msdtt0 attribute) inds_of_keys() (abipy.ml.aseml.AseResultsComparator method) indsym (abipy.core.structure.Structure property) infinite_flow() (in module abipy.flowtk.mocks) InfiniteFlow (class in abipy.flowtk.mocks) info (abipy.eph.varpeq.Entry attribute) (abipy.flowtk.nodes.Dependency property) (abipy.flowtk.tasks.AbinitBuild attribute) info() (abipy.flowtk.nodes.NodeHistory method) info_str (abipy.panels.ddb.CompareDdbWithMP attribute) (abipy.panels.ddb.DdbPanelWithFileInput attribute) (abipy.panels.ddb.PanelWithFileInput attribute) (abipy.panels.ddb.PanelWithStructureInput attribute) (abipy.panels.ddb.RobotWithFileInput attribute) (abipy.panels.outputs.AbinitOutputFilePanelWithFileInput attribute) (abipy.panels.structure.InputFileGenerator attribute) init_counter() (in module abipy.flowtk.nodes) initial_structure (abipy.dynamics.hist.HistFile property) initial_structure() (abipy.abio.outputs.AbinitOutputFile method) initial_structures() (abipy.abio.outputs.AbinitOutputFile method) inodes (abipy.core.atom.RadialFunction property) input_from_editor() (in module abipy.tools.iotools) InputDecoratorError InputFileGenerator (class in abipy.panels.structure) InputVariable (class in abipy.abio.variable) insert_a_inbox() (abipy.eph.varpeq.Polaron method) insert_b_inbox() (abipy.eph.varpeq.Polaron method) insert_block() (abipy.dfpt.ddb.DdbFile method) inspect() (abipy.flowtk.flows.Flow method) (abipy.flowtk.tasks.PhononTask method) (abipy.flowtk.tasks.RelaxTask method) (abipy.flowtk.tasks.ScfTask method) install_config_files() (in module abipy.abilab) install_event_handlers() (abipy.flowtk.nodes.Node method) install_nn_names() (in module abipy.ml.aseml) integral() (abipy.core.atom.RadialFunction method) (abipy.core.func1d.Function1D method) integral3d() (abipy.core.atom.RadialFunction method) integral_value() (abipy.core.func1d.Function1D method) integrate() (abipy.core.mesh3d.Mesh3D method) InteratomicForceConstants (class in abipy.dfpt.ifc) interp_kpts() (abipy.core.skw.ElectronInterpolator method) interp_kpts_and_enforce_degs() (abipy.core.skw.ElectronInterpolator method) interpolate() (abipy.electrons.ebands.ElectronBands method) (abipy.electrons.gw.SigresFile method) (abipy.eph.sigeph.SigEPhFile method) interpolate_ebands() (abipy.wannier90.abiwan.AbiwanFile method) inv_vectors() (abipy.core.mesh3d.Mesh3D method)

inverse() (abipy.core.symmetries.LatticeRotation method) inverse_participation_ratio() (in module abipy.embedding.utils_ifc) InverseDielectricFunction (class in abipy.electrons.scr) ion_ioncell_relax_and_ebands_input() (in module abipy.abio.factories) ion_ioncell_relax_input() (in module abipy.abio.factories) ions (abipy.ml.aseml.RX_MODE attribute) ipath_from_ext() (abipy.flowtk.works.Work method) ipw_edos_widget() (abipy.electrons.ebands.ElectronBands method) ipw_harmonic_thermo() (abipy.dfpt.phonons.PhononDosPlotter method) ipw_listdir() (in module abipy.tools.notebooks) ipw_select_plot() (abipy.dfpt.phonons.PhononBandsPlotter method) (abipy.dfpt.phonons.PhononDosPlotter method) (abipy.electrons.bse.MultipleMdfPlotter method) (abipy.electrons.ebands.ElectronBandsPlotter method) (abipy.electrons.ebands.ElectronDosPlotter method) ipw_visualize_widget() (abipy.waves.wfkfile.WfkFile method) ir_small() (abipy.core.atom.RadialFunction method) irdvars_for_ext() (in module abipy.flowtk.utils) IrredZone (class in abipy.core.kpoints) irvec() (abipy.wannier90.abiwan.AbiwanFile method) is_abiunit() (in module abipy.abio.abivars) is_abivar() (in module abipy.abio.abivars) is_available (abipy.iotools.visualizer.Visualizer property) is_completed (abipy.flowtk.qjobs.QueueJob property) is_critical (abipy.flowtk.nodes.Status property) is_dfpt_task (abipy.flowtk.tasks.AbinitTask property) is_diagonal() (in module abipy.tools.numtools) is_failed (abipy.flowtk.qjobs.QueueJob property) is_file (abipy.flowtk.nodes.Node property) is_flow (abipy.flowtk.nodes.Node property) is_gamma() (abipy.core.kpoints.Kpoint method) is_gs_task (abipy.flowtk.tasks.AbinitTask property) is_ibz (abipy.core.kpoints.KpointList property) is_input (abipy.abio.inputs.AbinitInput property) (abipy.abio.inputs.MultiDataset property) is_intlike() (in module abipy.tools.duck) is_listlike() (in module abipy.tools.duck) is_macosx_app (abipy.iotools.visualizer.Visualizer attribute) is_metapsp (abipy.ppcodes.oncv_parser.OncvParser property) is_mpmesh (abipy.core.kpoints.KpointList property) is_multidataset (abipy.abio.inputs.AbinitInput property) (abipy.abio.inputs.MultiDataset property) is_number_like() (in module abipy.tools.duck) is_oncvpsp (abipy.ppcodes.oncv_parser.OncvParser property) is_path (abipy.core.kpoints.KpointList property) is_proper() (abipy.core.symmetries.LatticeRotation method) is_running (abipy.flowtk.qjobs.QueueJob property) is_scf_run() (abipy.electrons.gsr.GsrFile method) is_shift (abipy.core.kpoints.Ktables attribute) is_sortable() (abipy.abio.robots.Robot method) is_string() (in module abipy.tools.duck) is_symmorphic() (abipy.core.symmetries.AbinitSpaceGroup method) is_task (abipy.flowtk.nodes.Node property) is_valence (abipy.ppcodes.oncv_parser.AtomicLevel attribute) is_work (abipy.flowtk.nodes.Node property) isabifile() (in module abipy.abilab) iscomplexobj (abipy.core.func1d.Function1D property) isE() (abipy.core.symmetries.LatticeRotation method) isI() (abipy.core.symmetries.LatticeRotation method) isinstance() (abipy.flowtk.nodes.Node method) isite (abipy.ml.relax_scanner.Entry attribute) isnc (abipy.abio.inputs.AbinitInput property) (abipy.abio.inputs.MultiDataset property) (abipy.flowtk.tasks.AbinitTask property) (abipy.flowtk.works.Work property) isncfile (abipy.flowtk.utils.File property) isneutral (abipy.core.atom.AtomicConfiguration property) isnot_ibz_sampling() (abipy.electrons.ebands.ElectronBands method) ispaw (abipy.abio.inputs.AbinitInput property) (abipy.abio.inputs.MultiDataset property) (abipy.flowtk.tasks.AbinitTask property) (abipy.flowtk.works.Work property) issamek() (in module abipy.core.kpoints) it1 (abipy.dynamics.analyzer.SigmaBerend attribute) it2 (abipy.dynamics.analyzer.SigmaBerend attribute) items() (abipy.abio.robots.Robot method) (abipy.flowtk.abiinspect.CyclesPlotter method) (abipy.ppcodes.oncv_plotter.MultiOncvPlotter method) (abipy.tools.plotting.ArrayPlotter method) iter_fftalgs() (abipy.tools.fftprof.FFTBenchmark method) iter_ixyz_r() (abipy.core.mesh3d.Mesh3D method) iter_lineopt() (abipy.abio.robots.Robot method) (abipy.dfpt.phonons.PhononBandsPlotter method) (abipy.electrons.ebands.ElectronBandsPlotter method) iter_lineopt_plotly() (abipy.dfpt.phonons.PhononBandsPlotter method) (abipy.electrons.ebands.ElectronBandsPlotter method) iter_mdat() (abipy.dynamics.analyzer.MultiMdAnalyzer method) iter_mdatc() (abipy.dynamics.analyzer.MultiMdAnalyzer method) iter_structures() (abipy.dynamics.analyzer.MdAnalyzer method) itup2s() (in module abipy.core.abinit_units) iv0 (abipy.dfpt.gruneisen.GrunsNcFile property) ivoigt_from_comp() (abipy.ml.aseml.AseResultsComparator method) iw0() (abipy.dfpt.phonons.PhononDos method) (abipy.eph.a2f.A2f method) (abipy.eph.a2f.A2Ftr method)

J

j() (abipy.core.atom.NlkState method) JobStatus (class in abipy.flowtk.qjobs) jsmol_html() (in module abipy.panels.core) json_dump() (abipy.flowtk.nodes.NodeResults method)

json_load() (abipy.flowtk.nodes.NodeResults class method) json_pretty_dump() (in module abipy.tools.serialization) JSON_SCHEMA (abipy.flowtk.nodes.NodeResults attribute) JSONViewer (class in abipy.panels.viewers) JsPane (class in abipy.panels.flows)

K

k2s() (in module abipy.eph.gpath) kappa() (in module abipy.electrons.optic) kcalc2ibz() (abipy.eph.sigeph.SigEPhFile method) kene_vs_ecut() (abipy.ppcodes.oncv_parser.OncvParser method) KerangeTask (class in abipy.flowtk.tasks) key (abipy.dynamics.analyzer.ArrheniusEntry attribute) keys() (abipy.abio.robots.Robot method) (abipy.dynamics.analyzer.ArrheniusPlotter method) (abipy.tools.plotting.ArrayPlotter method) kidxs (abipy.electrons.ebands.ElectronBands property) kin_densities() (abipy.ppcodes.oncv_parser.OncvParser method) kindex() (abipy.electrons.ebands.ElectronBands method) (abipy.waves.wfkfile.WfkFile method) kinerr_nlk() (abipy.ppcodes.oncv_parser.OncvParser method) kmesh_from_mpdivs() (in module abipy.core.kpoints)

Kpath (class in abipy.core.kpoints) Kpoint (class in abipy.core.kpoints) KpointList (class in abipy.core.kpoints) kpoints (abipy.core.mixins.Has_ElectronBands property) (abipy.electrons.scr.ScrFile property) kpoints() (abipy.eph.varpeq.Polaron method) kpoints_from_line_density() (in module abipy.abio.inputs) KpointStar (class in abipy.core.kpoints) kptopt() (abipy.electrons.ebands.ElectronBands method) KPTS_ERANGE (abipy.abio.enums.WFK_TASK attribute) ks_dirgaps() (abipy.eph.sigeph.SigEPhFile method) ksign() (abipy.core.atom.NlkState method) Ktables (class in abipy.core.kpoints) kwargs_for_anaget_phbst_and_phdos_files() (abipy.panels.ddb.DdbRobotPanel method) (abipy.panels.ddb.PanelWithAnaddbParams method)

L

l (abipy.ppcodes.oncv_parser.AtanLogDer attribute) (abipy.ppcodes.oncv_parser.ConvData attribute) l1_norm() (abipy.core.func1d.Function1D method) l2_norm() (abipy.core.func1d.Function1D method) l2color (abipy.electrons.fatbands.FatBandsFile attribute) l2tex (abipy.electrons.fatbands.FatBandsFile attribute) L_hw() (abipy.lumi.lineshape.Lineshape method) labels (abipy.abio.robots.Robot property) (abipy.ppcodes.oncv_plotter.MultiOncvPlotter property) lambda_iso() (abipy.eph.a2f.A2f method) last_etotal (abipy.flowtk.abiinspect.D2DEScfCycle property) (abipy.flowtk.abiinspect.GroundStateScfCycle property) last_iteration (abipy.flowtk.abiinspect.ScfCycle property) latex (abipy.eph.varpeq.Entry attribute) latex() (abipy.core.atom.NlkState method) latex_avg_volume (abipy.dynamics.analyzer.MdAnalyzer property) latex_formula (abipy.core.structure.Structure property) (abipy.dynamics.analyzer.DiffusionData attribute) (abipy.dynamics.analyzer.MdAnalyzer property) (abipy.dynamics.analyzer.SigmaBerend attribute) latex_formula_n_temp (abipy.dynamics.analyzer.MdAnalyzer property) latex_l() (abipy.core.atom.NlkState method) latex_label (abipy.core.fields.Density attribute) (abipy.core.fields.VhartreePotential attribute) (abipy.core.fields.VhxcPotential attribute) (abipy.core.fields.VksPotential attribute) (abipy.core.fields.VxcPotential attribute) latex_name (abipy.electrons.scr.DielectricFunction attribute) (abipy.electrons.scr.InverseDielectricFunction attribute) (abipy.electrons.scr.Polarizability attribute) latex_symbol (abipy.eph.sigeph.EphSelfEnergy attribute) lattice (abipy.core.kpoints.Kpoint property) lattice() (abipy.ml.relax_scanner.RelaxScannerAnalyzer method) lattice_dataframe (abipy.core.restapi.DatabaseStructures property) LatticeRotation (class in abipy.core.symmetries) launch() (abipy.flowtk.tasks.TaskManager method) LdaUDecorator (class in abipy.abio.decorators) LdauParams (class in abipy.flowtk.abiobjects) levelname (abipy.flowtk.nodes.HistoryRecord attribute) levelno (abipy.flowtk.nodes.HistoryRecord attribute) lexx_for_symbol() (abipy.flowtk.abiobjects.LexxParams method) LexxDecorator (class in abipy.abio.decorators) LexxParams (class in abipy.flowtk.abiobjects) likely_code_error() (abipy.flowtk.qjobs.QueueJob method)

linear_lsq_linefit() (in module abipy.dynamics.analyzer) linecolor (abipy.electrons.fatbands.FatBandsFile attribute) lineno (abipy.flowtk.abiinspect.YamlDoc attribute) (abipy.flowtk.nodes.HistoryRecord attribute) lines() (abipy.core.kpoints.Kpath method) Lineshape (class in abipy.lumi.lineshape) lineshape_1D_zero_temp() (abipy.lumi.deltaSCF.DeltaSCF method) linestyle_aeps (abipy.ppcodes.oncv_plotter.OncvPlotter attribute) linestyle_qsamp (abipy.eph.a2f.A2fRobot attribute) linestyles_der (abipy.electrons.psps.PspsFile attribute) linewidth (abipy.electrons.fatbands.FatBandsFile attribute) (abipy.ppcodes.oncv_plotter.OncvPlotter attribute) linewidth_slider() (in module abipy.display.utils) linewidths (abipy.dfpt.phonons.PhononBands property) (abipy.electrons.ebands.ElectronBands property) linspace() (abipy.abio.inputs.AbinitInput method) list_filepaths() (abipy.flowtk.utils.Directory method) list_ints() (in module abipy.tools.duck) listext() (abipy.flowtk.flows.Flow method) lmax() (abipy.ppcodes.oncv_parser.OncvParser method) lo_to_splitting (abipy.panels.ddb.PanelWithAnaddbParams attribute) load_module() (abipy.flowtk.launcher.ScriptEditor method) load_modules() (abipy.flowtk.launcher.ScriptEditor method) Loading (class in abipy.panels.core) LobsterAnalyzer (class in abipy.electrons.lobster) LobsterDoscarFile (class in abipy.electrons.lobster) LobsterInput (class in abipy.electrons.lobster) localization_ratio() (in module abipy.embedding.utils_ifc) log_correction() (abipy.flowtk.nodes.Node method) lomo_sk() (abipy.electrons.ebands.ElectronBands method) lomos (abipy.electrons.ebands.ElectronBands property) LONGWAVE (abipy.abio.enums.RUNL attribute) look_before_you_leap() (abipy.flowtk.flows.Flow method) lorentzian() (in module abipy.tools.numtools) LrujAnalyzer (class in abipy.electrons.lruj) LrujResults (class in abipy.electrons.lruj) luj_for_symbol() (abipy.flowtk.abiobjects.LdauParams method) LujForSpecie (class in abipy.flowtk.abiobjects) LumiWork (class in abipy.flowtk.lumi_works) LumiWork_relaxations (class in abipy.flowtk.lumi_works) LumiWorkFromRelax (class in abipy.flowtk.lumi_works) lumo_sk() (abipy.electrons.ebands.ElectronBands method) lumos (abipy.electrons.ebands.ElectronBands property) lwindow() (abipy.wannier90.abiwan.AbiwanFile method)

M

macro_uj (abipy.electrons.lruj.LrujResults attribute) MAGIC (abipy.flowtk.abiinspect.D2DEScfCycle attribute) (abipy.flowtk.abiinspect.GroundStateScfCycle attribute) (abipy.flowtk.abiinspect.ScfCycle attribute) magmoms (abipy.ml.aseml.AseResults attribute) magnetization() (abipy.core.fields.Density method) magnetization_field() (abipy.core.fields.Density method) make_ase_neb() (in module abipy.ml.aseml) make_bec_inputs() (abipy.abio.inputs.AbinitInput method) make_dde_inputs() (abipy.abio.inputs.AbinitInput method) make_ddepert_input() (abipy.abio.inputs.AbinitInput method) make_ddk_inputs() (abipy.abio.inputs.AbinitInput method) make_ddkpert_input() (abipy.abio.inputs.AbinitInput method) make_dfpt_effmass_inputs() (abipy.abio.inputs.AbinitInput method) make_dir() (abipy.flowtk.utils.File method) make_dkdk_input() (abipy.abio.inputs.AbinitInput method) make_doped_supercells() (abipy.core.structure.Structure method) make_dte_inputs() (abipy.abio.inputs.AbinitInput method) make_dtepert_input() (abipy.abio.inputs.AbinitInput method) make_ebands_input() (abipy.abio.inputs.AbinitInput method) make_edos_input() (abipy.abio.inputs.AbinitInput method) make_eph_transport_input() (abipy.abio.inputs.AbinitInput method) make_executable() (in module abipy.tools.iotools) make_gwr_qprange_input() (abipy.abio.inputs.AbinitInput method) make_input() (abipy.flowtk.tasks.AnaddbTask method) (abipy.flowtk.tasks.OpticTask method) make_isodistort_ph_dir() (abipy.dfpt.phonons.PhononBands method) make_light_tarfile() (abipy.flowtk.flows.Flow method) make_links() (abipy.flowtk.tasks.AnaddbTask method) (abipy.flowtk.tasks.OpticTask method) make_nscf_kptopt0_input() (abipy.abio.inputs.AbinitInput method) make_ph_inputs_qpoint() (abipy.abio.inputs.AbinitInput method) make_qadapter() (in module abipy.flowtk.qadapters) make_quad_input() (abipy.abio.inputs.AbinitInput method) make_scheduler() (abipy.flowtk.flows.Flow method) make_strain_perts_inputs() (abipy.abio.inputs.AbinitInput method) make_tarfile() (abipy.flowtk.flows.Flow method) make_targz() (abipy.abio.inputs.AbstractInput method) (abipy.abio.inputs.MultiDataset method) make_wfk_kerange_inputs() (abipy.abio.inputs.AbinitInput method) makedirs() (abipy.flowtk.utils.Directory method) map2rpn() (in module abipy.flowtk.utils) map_two_structures_coords() (in module abipy.embedding.utils_ifc) Marker (class in abipy.tools.plotting) marker_qsamp (abipy.eph.a2f.A2fRobot attribute) marker_size (abipy.electrons.fatbands.FatBandsFile attribute) marker_spin (abipy.electrons.fatbands.FatBandsFile attribute) (abipy.electrons.gw.SigresFile attribute) (abipy.eph.a2f.A2f attribute) (abipy.eph.a2f.A2Ftr attribute) (abipy.eph.sigeph.SigEPhFile attribute) marker_spin_plotly (abipy.electrons.fatbands.FatBandsFile attribute) markers_aeps (abipy.ppcodes.oncv_plotter.OncvPlotter attribute) markers_dropdown() (in module abipy.display.utils) markersize (abipy.ppcodes.oncv_plotter.OncvPlotter attribute) mass_factor() (abipy.dfpt.frozen_phonons.FrozenPhonon method) mass_list() (abipy.lumi.lineshape.Lineshape method) match_eigenvectors() (in module abipy.dfpt.phtk) max (abipy.core.func1d.Function1D property) max_angcoeff (abipy.dynamics.analyzer.DiffusionData attribute) max_cores (abipy.flowtk.tasks.TaskManager property) max_cores() (abipy.flowtk.tasks.ParalHints method) max_efficiency() (abipy.flowtk.tasks.ParalHints method) max_force() (abipy.electrons.gsr.GsrFile method) max_mem_per_proc() (abipy.flowtk.tasks.ParalHints method) max_speedup() (abipy.flowtk.tasks.ParalHints method) max_time (abipy.dynamics.analyzer.MdAnalyzer property) maxdeg (abipy.electrons.lruj.LrujResults attribute) maxfreq (abipy.dfpt.phonons.PhononBands property) MayaviFieldAnimator (class in abipy.display.mvtk) mband (abipy.core.mixins.Has_ElectronBands property) md_filepath (abipy.flowtk.tasks.AnaddbTask property) mda (abipy.dynamics.analyzer.Msdtt0 attribute) MdAnalyzer (class in abipy.dynamics.analyzer) MDF_TYPECPLX2TEX (abipy.electrons.bse.MultipleMdfPlotter attribute) MDF_TYPES (abipy.electrons.bse.MultipleMdfPlotter attribute) MdfFile (class in abipy.electrons.bse) MdfPlotter (class in abipy.electrons.bse) MdfReader (class in abipy.electrons.bse) mem_per_proc (abipy.flowtk.tasks.TaskManager property) memoized_method() (in module abipy.tools.decorators) merge() (abipy.eph.sigeph.QpTempList method) (abipy.flowtk.wrappers.Mrgddb method) (abipy.flowtk.wrappers.Mrgdvdb method) merge_dataframes_sk() (abipy.electrons.gw.SigresRobot method) merge_deps() (abipy.flowtk.nodes.Node method) merge_qpoints() (abipy.flowtk.wrappers.Mrgscr method) merge_scr_files() (abipy.flowtk.gw_works.ScreeningWork method) merge_scrfiles() (abipy.flowtk.works.QptdmWork method) mesh (abipy.core.func1d.Function1D property) (abipy.core.kpoints.Ktables attribute) Mesh3D (class in abipy.core.mesh3d) message (abipy.flowtk.nodes.HistoryRecord attribute) metric (abipy.electrons.lruj.LrujResults attribute) min (abipy.core.func1d.Function1D property) min_angcoeff (abipy.dynamics.analyzer.DiffusionData attribute) min_ghost_empty_ha() (abipy.ppcodes.oncv_parser.OncvParser method) minfreq (abipy.dfpt.phonons.PhononBands property) minimal_scf_input() (in module abipy.abio.factories) minmax_ridx (abipy.core.atom.RadialFunction property) mjson_load() (in module abipy.tools.serialization) mjson_loads() (in module abipy.tools.serialization) mjson_write() (in module abipy.tools.serialization) mkdir() (abipy.ml.aseml.MlBase method) MlBase (class in abipy.ml.aseml) MlCompareNNs (class in abipy.ml.aseml) MlCwfEos (class in abipy.ml.aseml) MlGsList (class in abipy.ml.aseml) MlMd (class in abipy.ml.aseml) MlNeb (class in abipy.ml.aseml) MlOrderer (class in abipy.ml.aseml) MlPhonopy (class in abipy.ml.ml_phonopy) MlPhonopyWithDDB (class in abipy.ml.ml_phonopy) MlRelaxer (class in abipy.ml.aseml) MlValidateWithAbinitio (class in abipy.ml.aseml) mnemonics (abipy.abio.inputs.AbinitInput property) MoabJob (class in abipy.flowtk.qjobs) modes() (abipy.abio.inputs.AnaddbInput class method) modes_at_qpoint() (abipy.abio.inputs.AnaddbInput class method) modes_at_qpoints() (abipy.abio.inputs.AnaddbInput class method) module abipy.abilab abipy.abio abipy.abio.abivars abipy.abio.abivars_db abipy.abio.decorators abipy.abio.enums abipy.abio.factories abipy.abio.input_tags abipy.abio.inputs abipy.abio.outputs abipy.abio.robots abipy.abio.timer abipy.abio.variable abipy.core abipy.core.abinit_units abipy.core.atom abipy.core.fields abipy.core.func1d abipy.core.globals abipy.core.gsphere abipy.core.irrepsdb abipy.core.kpoints abipy.core.mesh3d abipy.core.mixins abipy.core.restapi abipy.core.site_symmetries abipy.core.skw abipy.core.structure abipy.core.symmetries abipy.data abipy.dfpt abipy.dfpt.anaddbnc abipy.dfpt.converters abipy.dfpt.ddb abipy.dfpt.elastic abipy.dfpt.frozen_phonons abipy.dfpt.gruneisen abipy.dfpt.ifc abipy.dfpt.msqdos abipy.dfpt.phonons abipy.dfpt.phtk abipy.dfpt.qha abipy.dfpt.qha_2D abipy.dfpt.qha_general_stress abipy.dfpt.raman abipy.dfpt.vsound abipy.dfpt.vzsisa abipy.display abipy.display.mvtk abipy.display.utils abipy.dynamics abipy.dynamics.analyzer abipy.dynamics.hist abipy.electrons abipy.electrons.bse abipy.electrons.charges abipy.electrons.denpot abipy.electrons.ebands abipy.electrons.effmass_analyzer abipy.electrons.eskw abipy.electrons.fatbands abipy.electrons.fold2bloch abipy.electrons.gsr abipy.electrons.gw abipy.electrons.lobster abipy.electrons.lruj abipy.electrons.optic abipy.electrons.psps abipy.electrons.scissors abipy.electrons.scr abipy.embedding abipy.embedding.embedding_ifc abipy.embedding.utils_ifc abipy.eph abipy.eph.a2f abipy.eph.common abipy.eph.cumulant abipy.eph.eph_plotter abipy.eph.gpath abipy.eph.gstore abipy.eph.rta abipy.eph.sigeph abipy.eph.transportfile abipy.eph.v1sym abipy.eph.varpeq abipy.eph.wr abipy.flowtk abipy.flowtk.abiinspect abipy.flowtk.abiobjects abipy.flowtk.abiphonopy abipy.flowtk.abitimer abipy.flowtk.dfpt_works abipy.flowtk.effmass_works abipy.flowtk.eph_flows abipy.flowtk.events abipy.flowtk.flows abipy.flowtk.gruneisen abipy.flowtk.gs_works abipy.flowtk.gw_works abipy.flowtk.gwr_works abipy.flowtk.launcher abipy.flowtk.lumi_works abipy.flowtk.mocks abipy.flowtk.netcdf abipy.flowtk.nodes abipy.flowtk.pseudos abipy.flowtk.qadapters abipy.flowtk.qjobs abipy.flowtk.qutils abipy.flowtk.tasks abipy.flowtk.utils abipy.flowtk.vzsisa abipy.flowtk.works abipy.flowtk.wrappers abipy.flowtk.zsisa abipy.iotools abipy.iotools.visualizer abipy.iotools.xsf abipy.lumi abipy.lumi.deltaSCF abipy.lumi.lineshape abipy.ml abipy.ml.aseml abipy.ml.extxyz_generator abipy.ml.ml_phonopy abipy.ml.relax_scanner abipy.ml.tools abipy.panels abipy.panels.a2f abipy.panels.core abipy.panels.ddb abipy.panels.fatbands abipy.panels.flows abipy.panels.gsr abipy.panels.hist abipy.panels.nodes abipy.panels.outputs abipy.panels.phonons abipy.panels.sigeph abipy.panels.structure abipy.panels.tasks abipy.panels.viewers abipy.panels.works abipy.ppcodes abipy.ppcodes.base_parser abipy.ppcodes.oncv_parser abipy.ppcodes.oncv_plotter abipy.ppcodes.ppgen abipy.tools abipy.tools.bessel abipy.tools.cli_parsers abipy.tools.context_managers abipy.tools.decorators abipy.tools.derivatives abipy.tools.devtools abipy.tools.duck abipy.tools.fftprof abipy.tools.iotools abipy.tools.notebooks abipy.tools.numtools abipy.tools.parallel abipy.tools.plotting abipy.tools.printing abipy.tools.serialization abipy.tools.tensors abipy.tools.text abipy.tools.typing abipy.wannier90 abipy.wannier90.abiwan abipy.wannier90.win abipy.wannier90.wout abipy.waves abipy.waves.pwwave abipy.waves.wfkfile

module (abipy.flowtk.nodes.HistoryRecord attribute) MolecularDynamics (class in abipy.ml.aseml) mongo_assimilate() (abipy.flowtk.flows.Flow method) mongo_id (abipy.flowtk.flows.Flow property) move() (abipy.flowtk.utils.File method) (abipy.flowtk.works.Work method) mp_match() (abipy.core.structure.Structure method) mp_match_structure() (in module abipy.core.structure) mp_search() (in module abipy.core.structure) mpdivs_shifts() (abipy.core.kpoints.KpointList method) mpi_procs (abipy.flowtk.tasks.TaskManager property) (abipy.panels.core.AbipyParameterized attribute) mpl() (in module abipy.panels.core) mpl_kwargs() (abipy.panels.core.AbipyParameterized method) mpl_style (abipy.dynamics.analyzer.ArrheniusEntry attribute) MpStructures (class in abipy.core.restapi) Mrgddb (class in abipy.flowtk.wrappers) Mrgdvdb (class in abipy.flowtk.wrappers) Mrgscr (class in abipy.flowtk.wrappers) msd_t (abipy.dynamics.analyzer.DiffusionData attribute) msd_t() (abipy.dynamics.analyzer.Msdtt0 method) msd_tt0_from_tac() (in module abipy.dynamics.analyzer) msdSScorrelated (abipy.dynamics.analyzer.DiffusionData attribute) Msdtt0 (class in abipy.dynamics.analyzer) Msdtt0List (class in abipy.dynamics.analyzer) msqd_dos() (abipy.dfpt.phonons.PhdosFile method) MsqDos (class in abipy.dfpt.msqdos) mu_e() (abipy.eph.sigeph.SigEPhFile method) MultiDataset (class in abipy.abio.inputs) multidimensional_optimization() (abipy.flowtk.tasks.ParalHints method) MultiFlowScheduler (class in abipy.flowtk.launcher) MultiMdAnalyzer (class in abipy.dynamics.analyzer) MultiMlNeb (class in abipy.ml.aseml) MultiOncvPlotter (class in abipy.ppcodes.oncv_plotter) MultipleMdfPlotter (class in abipy.electrons.bse) mvanimate() (abipy.dynamics.hist.HistFile method) mvplot_trajectories() (abipy.dynamics.hist.HistFile method) mwan() (abipy.wannier90.abiwan.AbiwanFile method) my_md() (in module abipy.panels.core) MyElasticTensor (class in abipy.dfpt.elastic) MyPiezoTensor (class in abipy.dfpt.elastic)

N

n() (in module abipy.electrons.optic) n_directions (abipy.dfpt.vsound.SoundVelocity property) n_displ (abipy.dfpt.frozen_phonons.FrozenPhonon property) n_elems (abipy.core.structure.Structure property) n_modes() (abipy.lumi.lineshape.Lineshape method) name (abipy.abio.variable.InputVariable property) (abipy.core.kpoints.Kpoint property) (abipy.core.kpoints.KpointStar property) (abipy.eph.varpeq.Entry attribute) (abipy.flowtk.nodes.Node property) (abipy.panels.a2f.A2fFilePanel attribute) (abipy.panels.core.AbipyParameterized attribute) (abipy.panels.core.BaseRobotPanel attribute) (abipy.panels.core.HTMLwithClipboardBtn attribute) (abipy.panels.core.NcFileViewer attribute) (abipy.panels.core.PanelWithEbandsRobot attribute) (abipy.panels.core.PanelWithElectronBands attribute) (abipy.panels.core.PanelWithStructure attribute) (abipy.panels.ddb.CompareDdbWithMP attribute) (abipy.panels.ddb.DdbFilePanel attribute) (abipy.panels.ddb.DdbPanelWithFileInput attribute) (abipy.panels.ddb.DdbRobotPanel attribute) (abipy.panels.ddb.PanelWithAnaddbParams attribute) (abipy.panels.ddb.PanelWithFileInput attribute) (abipy.panels.ddb.PanelWithStructureInput attribute) (abipy.panels.ddb.RobotWithFileInput attribute) (abipy.panels.fatbands.FatBandsFilePanel attribute) (abipy.panels.flows.FlowPanel attribute) (abipy.panels.flows.JsPane attribute) (abipy.panels.flows.WorkTaskSelector attribute) (abipy.panels.gsr.GsrFilePanel attribute) (abipy.panels.gsr.GsrRobotPanel attribute) (abipy.panels.hist.HistFilePanel attribute) (abipy.panels.nodes.FilePathSelect attribute) (abipy.panels.nodes.NodeParameterized attribute) (abipy.panels.nodes.StatusCards attribute) (abipy.panels.outputs.AbinitOutputFilePanel attribute) (abipy.panels.outputs.AbinitOutputFilePanelWithFileInput attribute) (abipy.panels.phonons.PhononBandsPlotterPanel attribute) (abipy.panels.sigeph.SigEPhFilePanel attribute) (abipy.panels.structure.InputFileGenerator attribute) (abipy.panels.structure.StructurePanel attribute) (abipy.panels.tasks.TaskPanel attribute) (abipy.panels.viewers.AceViewer attribute) (abipy.panels.viewers.JSONViewer attribute) (abipy.panels.works.WorkPanel attribute) name() (abipy.core.symmetries.LatticeRotation method) name_tensor_list() (abipy.dfpt.elastic.ElasticData method) names (abipy.core.kpoints.KpointList property) natom (abipy.dfpt.ddb.DdbFile property) (abipy.electrons.lruj.LrujResults attribute) natom() (abipy.dynamics.analyzer.MdAnalyzer method) (abipy.dynamics.hist.HistReader method) (abipy.lumi.deltaSCF.DeltaSCF method) (abipy.ml.aseml.AseResultsComparator method) natoms (abipy.dfpt.qha.AbstractQHA property) nb (abipy.eph.gstore.Gqk attribute) (abipy.eph.varpeq.Polaron attribute) nband (abipy.core.mixins.Has_ElectronBands property) (abipy.electrons.ebands.ElectronBands property) nbz (abipy.core.kpoints.Ktables attribute) nc (abipy.ppcodes.oncv_parser.OncvParser attribute) nc_path (abipy.panels.core.NcFileViewer attribute) ncarriers (abipy.dynamics.analyzer.DiffusionData attribute) ncdump() (abipy.core.mixins.AbinitNcFile method) NcFileViewer (class in abipy.panels.core) ncores_allocated (abipy.flowtk.flows.Flow property) ncores_reserved (abipy.flowtk.flows.Flow property) ncores_used (abipy.flowtk.flows.Flow property) ndata (abipy.electrons.lruj.LrujResults attribute) ndegen() (abipy.wannier90.abiwan.AbiwanFile method) ndivsm (abipy.panels.ddb.PanelWithAnaddbParams attribute) ndtset (abipy.abio.inputs.MultiDataset property) need_abiext() (abipy.flowtk.utils.Directory method) nelect (abipy.core.mixins.Has_ElectronBands property) nelect_updown() (abipy.core.fields.Density method) neq() (abipy.eph.gstore.Gqk method) (abipy.eph.gstore.GstoreRobot method) netcdf_name (abipy.core.fields.Density attribute) (abipy.core.fields.VhartreePotential attribute) (abipy.core.fields.VhxcPotential attribute) (abipy.core.fields.VksPotential attribute) (abipy.core.fields.VxcPotential attribute) (abipy.electrons.scr.DielectricFunction attribute) (abipy.electrons.scr.InverseDielectricFunction attribute) (abipy.electrons.scr.Polarizability attribute) (abipy.electrons.scr.ScrFile property) neutral_from_symbol() (abipy.core.atom.AtomicConfiguration class method) new_with_decorators() (abipy.abio.inputs.AbinitInput method)

new_with_fixed_mpi_omp() (abipy.flowtk.tasks.TaskManager method) new_with_irred_kpoints() (abipy.electrons.ebands.ElectronBands method) new_with_structure() (abipy.abio.inputs.AbinitInput method) new_with_uptri_lattice() (abipy.core.structure.Structure method) new_with_vars() (abipy.abio.inputs.AbinitInput method) new_work() (abipy.flowtk.flows.Flow method) news_varname_values() (abipy.abio.inputs.AbinitInput method) next() (abipy.flowtk.abiinspect.YamlTokenizer method) next_d2de_scf_cycle() (abipy.abio.outputs.AbinitOutputFile method) next_doc_with_tag() (abipy.flowtk.abiinspect.YamlTokenizer method) next_gs_scf_cycle() (abipy.abio.outputs.AbinitOutputFile method) ng (abipy.electrons.scr.ScrFile property) ngkpt_and_shifts() (abipy.eph.varpeq.Polaron method) ngqpt() (abipy.eph.common.BaseEphReader method) nibz (abipy.core.kpoints.Ktables attribute) nimw (abipy.electrons.scr.ScrFile property) nk (abipy.eph.varpeq.Polaron attribute) nkpt (abipy.core.mixins.Has_ElectronBands property) (abipy.waves.wfkfile.WfkFile property) nlk (abipy.ppcodes.oncv_parser.AtomicLevel attribute) NlkState (class in abipy.core.atom) NLOpticalSusceptibilityTensor (class in abipy.tools.tensors) nntot() (abipy.wannier90.abiwan.AbiwanFile method) no (abipy.ml.aseml.RX_MODE attribute) node (abipy.flowtk.nodes.Dependency property) Node (class in abipy.flowtk.nodes) node_from_nid() (abipy.flowtk.flows.Flow method) node_id (abipy.flowtk.nodes.Node property) NodeCorrections (class in abipy.flowtk.nodes) NodeError NoDefaultProvided (class in abipy.tools.duck) NodeHistory (class in abipy.flowtk.nodes) NodeParameterized (class in abipy.panels.nodes) NodeResults (class in abipy.flowtk.nodes) non_anal_directions (abipy.dfpt.phonons.PhononBands property) non_anal_dyn_mat_eigenvect (abipy.dfpt.phonons.PhononBands property) non_anal_phdispl_cart (abipy.dfpt.phonons.PhononBands property) non_anal_phfreqs (abipy.dfpt.phonons.PhononBands property) NonAnalyticalPh (class in abipy.dfpt.phtk) NONE (abipy.abio.enums.WFK_TASK attribute) none (abipy.ml.aseml.CORRALGO attribute) none_if_masked_array() (abipy.iotools.ETSF_Reader method) NONLINEAR (abipy.abio.enums.RUNL attribute) norm() (abipy.core.kpoints.Kpoint method) (abipy.core.structure.Structure method) norm2() (abipy.waves.pwwave.PWWaveFunction method) NotebookWriter (class in abipy.core.mixins) nparr_to_df() (in module abipy.tools.numtools) npert (abipy.electrons.lruj.LrujResults attribute) nprocs_for_ntasks() (in module abipy.ml.relax_scanner) nq (abipy.eph.varpeq.Polaron attribute) nqpt (abipy.dfpt.phonons.PhononBands property) nqsmall (abipy.panels.ddb.PanelWithAnaddbParams attribute) nrew (abipy.electrons.scr.ScrFile property) NscfConvergenceWarning (class in abipy.flowtk.events) NscfDdksWork (class in abipy.flowtk.dfpt_works) NscfTask (class in abipy.flowtk.tasks) nspden (abipy.core.mixins.Has_ElectronBands property) nspinor (abipy.core.mixins.Has_ElectronBands property) nsppol (abipy.core.mixins.Has_ElectronBands property) (abipy.electrons.scissors.ScissorsBuilder property) nstates (abipy.eph.varpeq.Polaron attribute) nsteps() (abipy.ml.aseml.AseResultsComparator method) nt (abipy.dynamics.analyzer.MdAnalyzer property) ntemp (abipy.eph.rta.RtaFile property) (abipy.eph.sigeph.QpTempList property) (abipy.eph.transportfile.TransportFile property) num_cores (abipy.flowtk.tasks.TaskManager property) num_corrections (abipy.flowtk.nodes.Node property) num_errored_tasks (abipy.flowtk.flows.Flow property) num_qpoints (abipy.electrons.bse.DielectricFunction property) num_spatial_symmetries (abipy.core.symmetries.AbinitSpaceGroup property) num_steps (abipy.dynamics.hist.HistFile property) num_steps() (abipy.dynamics.hist.HistReader method) num_tasks (abipy.flowtk.flows.Flow property) num_unconverged_tasks (abipy.flowtk.flows.Flow property) num_valence_electrons (abipy.abio.inputs.AbinitInput property) num_valence_electrons() (abipy.core.structure.Structure method) number_of_atoms (abipy.dfpt.ifc.InteratomicForceConstants property) number_of_neighbours (abipy.dfpt.ifc.InteratomicForceConstants property) nums_and_text() (in module abipy.tools.text) nv (abipy.ppcodes.oncv_parser.OncvParser attribute) nvols (abipy.dfpt.gruneisen.GrunsNcFile property) (abipy.dfpt.qha.AbstractQHA property) (abipy.dfpt.vzsisa.Vzsisa property) nw (abipy.electrons.scr.ScrFile property) nwan_spin() (abipy.wannier90.abiwan.AbiwanFile method) nx (abipy.core.mesh3d.Mesh3D property) ny (abipy.core.mesh3d.Mesh3D property) nz (abipy.core.mesh3d.Mesh3D property)

O

occ (abipy.ppcodes.oncv_parser.AtomicLevel attribute) occ_scr (abipy.electrons.lruj.LrujResults attribute) occ_unscr (abipy.electrons.lruj.LrujResults attribute) occfacts (abipy.electrons.ebands.ElectronBands property) occtype (abipy.core.skw.ElectronInterpolator attribute) omega_log() (abipy.eph.a2f.A2f method) omp_threads (abipy.flowtk.tasks.TaskManager property) on_abisanitize_btn() (abipy.panels.structure.StructurePanel method) on_all_ok() (abipy.flowtk.abiphonopy.PhonopyGruneisenWork method) (abipy.flowtk.abiphonopy.PhonopyWork method) (abipy.flowtk.dfpt_works.ElasticWork method) (abipy.flowtk.effmass_works.EffMassAutoDFPTWork method) (abipy.flowtk.effmass_works.FrohlichZPRFlow method) (abipy.flowtk.flows.Flow method) (abipy.flowtk.gruneisen.GruneisenWork method) (abipy.flowtk.gs_works.EosWork method) (abipy.flowtk.gw_works.ScreeningWork method) (abipy.flowtk.gwr_works.GWRChiCompareWork method) (abipy.flowtk.gwr_works.GWRRPAConvWork method) (abipy.flowtk.gwr_works.GWRSigmaConvWork method) (abipy.flowtk.lumi_works.LumiWork method) (abipy.flowtk.lumi_works.LumiWork_relaxations method) (abipy.flowtk.lumi_works.LumiWorkFromRelax method) (abipy.flowtk.vzsisa.VzsisaWork method) (abipy.flowtk.works.BecWork method) (abipy.flowtk.works.DteWork method) (abipy.flowtk.works.PhononWfkqWork method) (abipy.flowtk.works.PhononWork method) (abipy.flowtk.works.QptdmWork method) (abipy.flowtk.zsisa.ThermalRelaxWork method) (abipy.flowtk.zsisa.ZsisaWork method) on_border() (abipy.core.kpoints.Kpoint method) on_compare_params_btn() (abipy.panels.core.BaseRobotPanel method) on_compute_elastic_btn() (abipy.panels.ddb.DdbFilePanel method) on_corrections_btn() (abipy.panels.nodes.NodeParameterized method) on_debug_btn() (abipy.panels.nodes.NodeParameterized method) on_dep_ok() (abipy.flowtk.flows.Flow method) on_dims_btn() (abipy.panels.nodes.NodeParameterized method) on_ebands_input_btn() (abipy.panels.structure.StructurePanel method) on_ebands_plotter_btn() (abipy.panels.core.PanelWithEbandsRobot method) on_edos_plotter_btn() (abipy.panels.core.PanelWithEbandsRobot method) on_events_btn() (abipy.panels.nodes.NodeParameterized method) on_file_input() (abipy.panels.ddb.CompareDdbWithMP method) (abipy.panels.ddb.DdbPanelWithFileInput method) (abipy.panels.ddb.PanelWithFileInput method) (abipy.panels.outputs.AbinitOutputFilePanelWithFileInput method) (abipy.panels.structure.InputFileGenerator method) on_goto_task_bnt() (abipy.panels.flows.FlowMultiPageApp method) on_goto_work_bnt() (abipy.panels.flows.FlowMultiPageApp method) on_graphviz_btn() (abipy.panels.nodes.NodeParameterized method) on_gs_input_btn() (abipy.panels.structure.StructurePanel method) on_gsr_dataframe_btn() (abipy.panels.gsr.GsrRobotPanel method) on_handlers_btn() (abipy.panels.nodes.NodeParameterized method) on_history_btn() (abipy.panels.nodes.NodeParameterized method) on_load_files() (abipy.panels.ddb.RobotWithFileInput method) on_mp_match_btn() (abipy.panels.structure.StructurePanel method) on_mpid_input() (abipy.panels.ddb.DdbPanelWithFileInput method) (abipy.panels.ddb.PanelWithFileInput method) (abipy.panels.structure.InputFileGenerator method) on_netcdf_info_btn() (abipy.panels.core.NcFileViewer method)

on_ok() (abipy.flowtk.vzsisa.VzsisaWork method) (abipy.flowtk.works.GKKPWork method) (abipy.flowtk.works.PhononWfkqWork method) (abipy.flowtk.works.RelaxWork method) (abipy.flowtk.zsisa.ZsisaWork method) on_ph_input_btn() (abipy.panels.structure.StructurePanel method) on_phbands_plot_btn() (abipy.panels.phonons.PhononBandsPlotterPanel method) on_plot_ebands_btn() (abipy.panels.core.PanelWithElectronBands method) on_plot_edos_btn() (abipy.panels.core.PanelWithElectronBands method) on_plot_effmass_btn() (abipy.panels.core.PanelWithElectronBands method) on_plot_fatbands_btn() (abipy.panels.fatbands.FatBandsFilePanel method) on_plot_fatdos_btn() (abipy.panels.fatbands.FatBandsFilePanel method) on_plot_ifc() (abipy.panels.ddb.DdbFilePanel method) on_plot_ifermi_btn() (abipy.panels.core.PanelWithElectronBands method) on_plot_phbands_and_phdos() (abipy.panels.ddb.DdbFilePanel method) on_plot_qpsolution_sk() (abipy.panels.sigeph.SigEPhFilePanel method) on_plot_relax_btn() (abipy.panels.hist.HistFilePanel method) on_plot_skw_btn() (abipy.panels.core.PanelWithElectronBands method) on_plotly_template() (abipy.panels.core.AbipyParameterized method) on_status_btn() (abipy.panels.nodes.NodeParameterized method) on_structures_btn() (abipy.panels.flows.FlowPanel method) on_task_btn() (abipy.panels.flows.FlowPanel method) on_vars_btn() (abipy.panels.nodes.NodeParameterized method) on_view_a2f() (abipy.panels.a2f.A2fFilePanel method) on_view_relax_btn() (abipy.panels.hist.HistFilePanel method) on_view_structure() (abipy.panels.core.PanelWithStructure method) oncv_make_open_notebook() (in module abipy.ppcodes.oncv_plotter) oncv_write_notebook() (in module abipy.ppcodes.oncv_plotter) OncvGenerator (class in abipy.ppcodes.ppgen) OncvParser (class in abipy.ppcodes.oncv_parser) OncvPlotter (class in abipy.ppcodes.oncv_plotter) one_point (abipy.ml.aseml.CORRALGO attribute) only_independent_chi_components() (abipy.abio.inputs.OpticInput method) opath_from_ext() (abipy.flowtk.nodes.FileNode method) (abipy.flowtk.works.Work method) open_ace_editor() (abipy.panels.viewers.AceViewer method) open_all_cards() (abipy.panels.nodes.StatusCards method) open_browser() (abipy.core.restapi.MpStructures method) (abipy.tools.devtools.HtmlDiff method) open_file_phononwebsite() (in module abipy.dfpt.phtk) open_files() (abipy.flowtk.flows.Flow method) open_gsr() (abipy.flowtk.nodes.FileNode method) open_gwr() (abipy.flowtk.tasks.GwrTask method) open_html() (in module abipy.panels.core) open_phbst() (abipy.flowtk.tasks.AnaddbTask method) open_phdos() (abipy.flowtk.tasks.AnaddbTask method) open_sigres() (abipy.flowtk.tasks.SigmaTask method) OpticError OpticInput (class in abipy.abio.inputs) OpticNcFile (class in abipy.electrons.optic) OpticReader (class in abipy.electrons.optic) OpticRobot (class in abipy.electrons.optic) OPTICS_FULLBZ (abipy.abio.enums.WFK_TASK attribute) OpticTask (class in abipy.flowtk.tasks) OpticVar (class in abipy.abio.inputs) order (abipy.core.symmetries.LatticeRotation property) ordered_intersection() (abipy.abio.robots.Robot static method) oscillator_strength() (abipy.dfpt.anaddbnc.AnaddbNcFile method) OutNcFile (class in abipy.abio.outputs) outpath_from_ext() (abipy.flowtk.tasks.AnaddbTask method)

P

p_nu() (abipy.lumi.lineshape.Lineshape method) pad_fermie (abipy.electrons.ebands.ElectronBands attribute) Pair (class in abipy.ml.relax_scanner) pairs_enediff_dist() (abipy.ml.relax_scanner.RelaxScannerAnalyzer method) PanelWithAnaddbParams (class in abipy.panels.ddb) PanelWithEbandsRobot (class in abipy.panels.core) PanelWithElectronBands (class in abipy.panels.core) PanelWithFileInput (class in abipy.panels.ddb) PanelWithStructure (class in abipy.panels.core) PanelWithStructureInput (class in abipy.panels.ddb) paral (abipy.dfpt.raman.PowderIntensity attribute) ParalHints (class in abipy.flowtk.tasks) ParalHintsParser (class in abipy.flowtk.tasks) params (abipy.core.mixins.AbinitNcFile property) params() (abipy.abio.outputs.OutNcFile method) (abipy.dfpt.anaddbnc.AnaddbNcFile method) (abipy.dfpt.ddb.DdbFile method) (abipy.dfpt.gruneisen.GrunsNcFile method) (abipy.dfpt.phonons.PhbstFile method) (abipy.dfpt.phonons.PhdosFile method) (abipy.dynamics.hist.HistFile method) (abipy.electrons.bse.MdfFile method) (abipy.electrons.eskw.EskwFile method) (abipy.electrons.fatbands.FatBandsFile method) (abipy.electrons.fold2bloch.Fold2BlochNcfile method) (abipy.electrons.gsr.GsrFile method) (abipy.electrons.gw.SigresFile method) (abipy.electrons.optic.OpticNcFile method) (abipy.electrons.psps.PspsFile method) (abipy.electrons.scr.ScrFile method) (abipy.eph.a2f.A2fFile method) (abipy.eph.gpath.GpathFile method) (abipy.eph.gstore.GstoreFile method) (abipy.eph.rta.RtaFile method) (abipy.eph.sigeph.SigEPhFile method) (abipy.eph.transportfile.TransportFile method) (abipy.eph.v1sym.V1symFile method) (abipy.eph.varpeq.VarpeqFile method) (abipy.eph.wr.WrNcFile method) (abipy.wannier90.abiwan.AbiwanFile method) (abipy.waves.wfkfile.WfkFile method) parname (abipy.electrons.lruj.LrujResults attribute) parse() (abipy.abio.abivars.AbinitInputParser method) (abipy.flowtk.events.EventsParser method) (abipy.flowtk.tasks.ParalHintsParser method) parse_lammps_input() (in module abipy.dynamics.analyzer) parse_tdep_fc() (in module abipy.dfpt.converters) parse_tdep_lotosplitting() (in module abipy.dfpt.converters) parse_timers() (abipy.flowtk.works.Work method) parse_timing() (abipy.flowtk.flows.Flow method) (abipy.flowtk.tasks.AbinitTask method) ParserError partial (abipy.electrons.lobster.CoxpFile attribute) path (abipy.flowtk.utils.Directory property) (abipy.flowtk.utils.File property) path2group() (abipy.eph.gstore.GstoreReader method) path_in() (abipy.flowtk.utils.Directory method) path_in_workdir() (abipy.flowtk.works.Work method) path_join() (abipy.flowtk.utils.Directory method) pathname (abipy.flowtk.nodes.HistoryRecord attribute) PAW_AEPSI (abipy.abio.enums.WFK_TASK attribute) pawecutdg() (abipy.electrons.gsr.GsrFile method) pawujat (abipy.electrons.lruj.LrujResults attribute) PbsProJob (class in abipy.flowtk.qjobs) PBSSTAT_TO_SLURM (abipy.flowtk.qjobs.PbsProJob attribute) pconfs (abipy.flowtk.tasks.AbinitTask property) pdos (abipy.electrons.lobster.LobsterDoscarFile attribute) perp (abipy.dfpt.raman.PowderIntensity attribute) persistent_id() (abipy.tools.serialization.PmgPickler method) persistent_load() (abipy.tools.serialization.PmgUnpickler method) pert_name (abipy.electrons.lruj.LrujResults attribute) pertsy_qpt() (abipy.eph.v1sym.V1symFile method) ph_ngqpt() (abipy.eph.common.BaseEphReader method) phbands (abipy.core.mixins.Has_PhononBands property) (abipy.dfpt.phonons.PhbstFile property) (abipy.eph.a2f.A2fFile property) phbands() (abipy.eph.gpath.GpathFile method) phbands_and_dos() (abipy.abio.inputs.AnaddbInput class method) phbands_dict (abipy.dfpt.phonons.PhononBandsPlotter property) phbands_list (abipy.dfpt.phonons.PhononBandsPlotter property) phbands_qpath_vol() (abipy.dfpt.gruneisen.GrunsNcFile method) PhbstFile (class in abipy.dfpt.phonons) phdispl_cart_qibz() (abipy.dfpt.gruneisen.GrunsNcFile method) phdos (abipy.dfpt.gruneisen.GrunsNcFile property) phdos() (abipy.dfpt.phonons.PhdosFile method) phdos_label_from_units() (in module abipy.core.abinit_units) phdos_list (abipy.dfpt.phonons.PhononDosPlotter property) phdoses() (abipy.dfpt.gruneisen.GrunsNcFile method) phdoses_dict (abipy.dfpt.phonons.PhononBandsPlotter property) phdoses_list (abipy.dfpt.phonons.PhononBandsPlotter property) PhdosFile (class in abipy.dfpt.phonons) PhdosReader (class in abipy.dfpt.phonons) phfactor_ev2units() (abipy.dfpt.phonons.PhononBands static method) (in module abipy.core.abinit_units) phonon (abipy.flowtk.abiphonopy.PhonopyWork attribute) PhononBands (class in abipy.dfpt.phonons) PhononBandsPlotter (class in abipy.dfpt.phonons) PhononBandsPlotterPanel (class in abipy.panels.phonons) PhononDos (class in abipy.dfpt.phonons) PhononDosPlotter (class in abipy.dfpt.phonons) phonons_from_gsinput() (in module abipy.abio.factories) PhononScfCycle (class in abipy.flowtk.abiinspect) PhononTask (class in abipy.flowtk.tasks) PhononWfkqWork (class in abipy.flowtk.works) PhononWork (class in abipy.flowtk.works) phonopy_tasks (abipy.flowtk.abiphonopy.PhonopyWork attribute) phonopy_to_abinit() (in module abipy.dfpt.converters) PhonopyGruneisenWork (class in abipy.flowtk.abiphonopy) PhonopyWork (class in abipy.flowtk.abiphonopy) phunit_tag() (in module abipy.core.abinit_units) pickle_dump() (abipy.core.mixins.NotebookWriter method) (abipy.core.skw.ElectronInterpolator method) (abipy.electrons.scissors.ScissorsBuilder method) (abipy.eph.sigeph.TdepElectronBands method) (abipy.flowtk.flows.Flow method) (abipy.tools.serialization.HasPickleIO method) pickle_dump_and_write_script() (abipy.ml.aseml.AseResultsComparator method) pickle_dumps() (abipy.flowtk.flows.Flow method) pickle_file (abipy.flowtk.flows.Flow property) PICKLE_FNAME (abipy.flowtk.flows.Flow attribute) pickle_load() (abipy.core.mixins.NotebookWriter class method) (abipy.core.skw.ElectronInterpolator class method) (abipy.electrons.scissors.ScissorsBuilder class method) (abipy.eph.sigeph.TdepElectronBands class method) (abipy.flowtk.flows.Flow class method) (abipy.tools.serialization.HasPickleIO class method) pickle_loads() (abipy.flowtk.flows.Flow class method) pickle_protocol (abipy.flowtk.flows.Flow attribute) pid_file (abipy.flowtk.flows.Flow property) (abipy.flowtk.launcher.PyFlowScheduler property) piezo_elastic() (abipy.abio.inputs.AnaddbInput class method) piezo_elastic_inputs_from_gsinput() (in module abipy.abio.factories) pjdos_symbol() (abipy.dfpt.phonons.PhdosFile method) plot() (abipy.abio.outputs.AbinitLogFile method) (abipy.abio.outputs.AbinitOutputFile method) (abipy.core.func1d.Function1D method) (abipy.core.kpoints.KpointList method) (abipy.core.structure.Structure method) (abipy.dfpt.ddb.DielectricTensorGenerator method) (abipy.dfpt.msqdos.MsqDos method) (abipy.dfpt.phonons.PhononBands method) (abipy.dfpt.phonons.PhononBandsPlotter method) (abipy.dfpt.phonons.PhononDos method) (abipy.dfpt.phonons.PhononDosPlotter method) (abipy.dfpt.vsound.SoundVelocity method) (abipy.dynamics.analyzer.ArrheniusPlotter method) (abipy.dynamics.analyzer.DiffusionData method) (abipy.dynamics.analyzer.DiffusionDataList method) (abipy.dynamics.analyzer.Msdtt0 method) (abipy.dynamics.analyzer.Msdtt0List method) (abipy.dynamics.analyzer.SigmaBerend method) (abipy.dynamics.hist.HistFile method) (abipy.electrons.bse.DielectricFunction method) (abipy.electrons.bse.MdfPlotter method) (abipy.electrons.bse.MultipleMdfPlotter method) (abipy.electrons.ebands.ElectronBands method) (abipy.electrons.ebands.ElectronBandsPlotter method) (abipy.electrons.ebands.ElectronDos method) (abipy.electrons.ebands.ElectronDosPlotter method) (abipy.electrons.lobster.CoxpFile method) (abipy.electrons.lobster.ICoxpFile method) (abipy.electrons.lobster.LobsterAnalyzer method) (abipy.electrons.lobster.LobsterDoscarFile method) (abipy.electrons.lruj.LrujAnalyzer method) (abipy.electrons.lruj.LrujResults method) (abipy.electrons.psps.PspsFile method) (abipy.eph.a2f.A2f method) (abipy.eph.a2f.A2fFile method) (abipy.eph.eph_plotter.EphPlotter method) (abipy.eph.sigeph.EphSelfEnergy method) (abipy.eph.sigeph.QpTempState method) (abipy.eph.sigeph.TdepElectronBands method) (abipy.flowtk.abiinspect.Relaxation method) (abipy.flowtk.abiinspect.ScfCycle method) (abipy.flowtk.utils.SparseHistogram method) (abipy.ml.aseml.AseMdLog method) (abipy.ml.aseml.AseTrajectoryPlotter method) (abipy.tools.fftprof.FFTBenchmark method) (abipy.tools.plotting.ArrayPlotter method) (abipy.tools.plotting.GenericDataFilePlotter method) (abipy.tools.plotting.GenericDataFilesPlotter method) (abipy.wannier90.abiwan.HWanR method) (abipy.wannier90.wout.WoutFile method) plot_a2() (abipy.eph.a2f.A2f method) plot_a2f_convergence() (abipy.eph.a2f.A2fRobot method) plot_a2f_interpol() (abipy.eph.a2f.A2fFile method) plot_a2fdata_convergence() (abipy.eph.a2f.A2fRobot method) plot_a2fw_all() (abipy.eph.sigeph.SigEPhFile method) plot_a2fw_skb() (abipy.eph.sigeph.SigEPhFile method) plot_a2fw_skb_sum() (abipy.eph.sigeph.SigEPhFile method) plot_abc_vs_t() (abipy.dfpt.qha.AbstractQHA method) (abipy.dfpt.vzsisa.Vzsisa method) plot_abc_vs_t_4th() (abipy.dfpt.vzsisa.Vzsisa method) plot_abs_conv() (abipy.abio.robots.Robot static method) plot_all() (abipy.dfpt.ddb.DielectricTensorGenerator method) plot_all_segments() (abipy.electrons.effmass_analyzer.EffMassAnalyzer method) plot_angle_vs_t() (abipy.dfpt.qha.AbstractQHA method) plot_angles_vs_t() (abipy.dfpt.vzsisa.Vzsisa method) plot_angles_vs_t_4th() (abipy.dfpt.vzsisa.Vzsisa method) plot_anharmonic_contribution() (abipy.dfpt.frozen_phonons.FrozenPhonon method) plot_ank_with_ebands() (abipy.eph.varpeq.Polaron method) plot_array() (in module abipy.tools.plotting) plot_atan_logders() (abipy.ppcodes.oncv_plotter.MultiOncvPlotter method) (abipy.ppcodes.oncv_plotter.OncvPlotter method) plot_atanlogder_econv() (abipy.ppcodes.oncv_plotter.MultiOncvPlotter method) (abipy.ppcodes.oncv_plotter.OncvPlotter method) plot_atomic_levels() (abipy.ppcodes.oncv_plotter.MultiOncvPlotter method) (abipy.ppcodes.oncv_plotter.OncvPlotter method) plot_atoms() (abipy.core.structure.Structure method) plot_average_pairs() (abipy.electrons.lobster.CoxpFile method) plot_ax() (abipy.core.func1d.Function1D method) (abipy.dfpt.phonons.PhononBands method) (abipy.dynamics.hist.HistFile method) (abipy.electrons.bse.DielectricFunction method) (abipy.electrons.ebands.ElectronBands method) (abipy.electrons.ebands.ElectronDos method) plot_band_edges() (abipy.electrons.ebands.ElectronBandsPlotter method) plot_bqnu_with_ddb() (abipy.eph.varpeq.Polaron method) plot_bqnu_with_phbands() (abipy.eph.varpeq.Polaron method) plot_bz() (abipy.core.mixins.Has_Structure method) (abipy.core.structure.Structure method) plot_centers_spread() (abipy.wannier90.wout.WoutFile method) plot_chi2() (abipy.electrons.optic.OpticNcFile method) plot_colored_matched() (abipy.dfpt.phonons.PhononBands method) plot_combiplot() (abipy.panels.ddb.DdbRobotPanel method) plot_convergence() (abipy.abio.robots.Robot method) plot_convergence_items() (abipy.abio.robots.Robot method) plot_convergence_rank3() (abipy.electrons.optic.OpticRobot method) plot_coxp_with_dos() (abipy.electrons.lobster.LobsterAnalyzer method) plot_delta_F_distance() (abipy.lumi.deltaSCF.DeltaSCF method) plot_delta_R_distance() (abipy.lumi.deltaSCF.DeltaSCF method) plot_den_formfact() (abipy.ppcodes.oncv_plotter.MultiOncvPlotter method) (abipy.ppcodes.oncv_plotter.OncvPlotter method) plot_densities() (abipy.ppcodes.oncv_plotter.MultiOncvPlotter method) (abipy.ppcodes.oncv_plotter.OncvPlotter method) plot_der_densities() (abipy.ppcodes.oncv_plotter.MultiOncvPlotter method) (abipy.ppcodes.oncv_plotter.OncvPlotter method) plot_der_potentials() (abipy.ppcodes.oncv_plotter.MultiOncvPlotter method) (abipy.ppcodes.oncv_plotter.OncvPlotter method) plot_diff_at_qpoint() (abipy.eph.v1sym.V1symFile method) plot_dos_idos() (abipy.dfpt.phonons.PhononDos method) (abipy.electrons.ebands.ElectronDos method) plot_dos_vs_kmeshes() (abipy.core.skw.ElectronInterpolator method) plot_dos_vs_qmesh() (abipy.panels.ddb.DdbFilePanel method) plot_e0w_qdirs() (abipy.dfpt.ddb.DielectricTensorGenerator method) plot_ebands() (abipy.core.mixins.Has_ElectronBands method) (abipy.flowtk.works.BandStructureWork method) plot_ebands_with_edos() (abipy.core.mixins.Has_ElectronBands method) (abipy.flowtk.works.BandStructureWork method) plot_edos() (abipy.eph.rta.RtaFile method) (abipy.eph.transportfile.TransportFile method) plot_edoses() (abipy.flowtk.works.BandStructureWork method) plot_eelf() (abipy.electrons.scr.ScrFile method) plot_eigvec_qp() (abipy.electrons.gw.SigresFile method) plot_ejdosvc() (abipy.electrons.ebands.ElectronBands method) plot_elastic_properties() (abipy.dfpt.anaddbnc.AnaddbNcRobot method) plot_emacro() (abipy.electrons.scr.ScrFile method) plot_emass() (abipy.electrons.effmass_analyzer.EffMassAnalyzer method) (abipy.electrons.effmass_analyzer.Segment method) plot_emission_spectrum() (abipy.lumi.lineshape.Lineshape method) plot_energies() (abipy.dfpt.qha.AbstractQHA method) (abipy.dfpt.qha.AbstractQmeshAnalyzer method) (abipy.dfpt.qha_2D.QHA_2D method) (abipy.dfpt.vzsisa.Vzsisa method) (abipy.dynamics.hist.HistFile method) (abipy.ml.aseml.AseResultsComparator method) plot_energies_traj() (abipy.ml.aseml.AseResultsComparator method) plot_eph_strength() (abipy.eph.a2f.A2fFile method) plot_eps0w() (abipy.panels.ddb.DdbFilePanel method) plot_fatbands() (abipy.dfpt.phonons.PhononBands method) plot_fatbands_lview() (abipy.electrons.fatbands.FatBandsFile method) plot_fatbands_mview() (abipy.electrons.fatbands.FatBandsFile method) plot_fatbands_siteview() (abipy.electrons.fatbands.FatBandsFile method) plot_fatbands_typeview() (abipy.electrons.fatbands.FatBandsFile method) plot_fatbands_with_pjdos() (abipy.electrons.fatbands.FatBandsFile method) plot_ffspl() (abipy.electrons.psps.PspsFile method) (abipy.electrons.psps.PspsRobot method) plot_fit() (abipy.electrons.scissors.ScissorsBuilder method) plot_fit_energies() (abipy.dfpt.frozen_phonons.FrozenPhonon method) plot_fit_freqs_dir() (abipy.dfpt.vsound.SoundVelocity method) plot_forces() (abipy.ml.aseml.AseResultsComparator method) plot_forces_traj() (abipy.ml.aseml.AseResultsComparator method) plot_four_BandStructures() (abipy.lumi.deltaSCF.DeltaSCF method) plot_free_energies() (abipy.dfpt.qha_2D.QHA_2D method) plot_g_kpath() (abipy.eph.gpath.GpathFile method) plot_g_qpath() (abipy.eph.gpath.GpathFile method) (abipy.eph.gpath.GpathRobot method)

plot_gruns_bs() (abipy.dfpt.gruneisen.GrunsNcFile method) plot_gruns_scatter() (abipy.dfpt.gruneisen.GrunsNcFile method) plot_harmonic_thermo() (abipy.dfpt.phonons.PhononDos method) (abipy.dfpt.phonons.PhononDosPlotter method) plot_hwanr() (abipy.wannier90.abiwan.AbiwanRobot method) plot_ibte_mrta_serta_conv() (abipy.eph.rta.RtaRobot method) plot_ibte_vs_rta_rho() (abipy.eph.rta.RtaFile method) (abipy.eph.rta.RtaRobot method) plot_intensity() (abipy.dfpt.raman.Raman method) plot_ion_relaxation() (abipy.flowtk.works.RelaxWork method) plot_ioncell_relaxation() (abipy.flowtk.works.RelaxWork method) plot_itemp() (abipy.eph.sigeph.TdepElectronBands method) plot_itemp_with_lws_vs_e0() (abipy.eph.sigeph.TdepElectronBands method) plot_kconv() (abipy.eph.varpeq.VarpeqRobot method) plot_kene_vs_ecut() (abipy.ppcodes.oncv_plotter.MultiOncvPlotter method) (abipy.ppcodes.oncv_plotter.OncvPlotter method) plot_ksbands_with_qpmarkers() (abipy.electrons.gw.SigresFile method) plot_labels() (in module abipy.display.mvtk) plot_lambda_convergence() (abipy.eph.a2f.A2fRobot method) plot_lattice() (abipy.dfpt.qha_2D.QHA_2D method) (abipy.ml.aseml.AseTrajectoryPlotter method) plot_lattice_convergence() (abipy.abio.robots.Robot method) plot_lattice_vectors() (in module abipy.display.mvtk) plot_lattices() (abipy.dynamics.analyzer.MdAnalyzer method) plot_leo() (abipy.electrons.optic.OpticNcFile method) plot_leo_convergence() (abipy.electrons.optic.OpticRobot method) plot_line() (abipy.waves.pwwave.PWWaveFunction method) plot_line_neighbors() (abipy.waves.pwwave.PWWaveFunction method) plot_linear_epsilon() (abipy.electrons.optic.OpticNcFile method) plot_lineshape_1D_zero_temp() (abipy.lumi.deltaSCF.DeltaSCF method) plot_linewidths_sigeph() (abipy.eph.eph_plotter.EphPlotter method) plot_linopt() (abipy.electrons.optic.OpticNcFile method) plot_linopt_convergence() (abipy.electrons.optic.OpticRobot method) plot_longitudinal_fatbands() (abipy.dfpt.phonons.PhononBands method) plot_longitudinal_fraction() (abipy.dfpt.phonons.PhononBands method) plot_longitudinal_ifc() (abipy.dfpt.ifc.InteratomicForceConstants method) plot_longitudinal_ifc_ewald() (abipy.dfpt.ifc.InteratomicForceConstants method) plot_longitudinal_ifc_short_range() (abipy.dfpt.ifc.InteratomicForceConstants method) plot_lt_character() (abipy.dfpt.phonons.PhononBands method) plot_lws() (abipy.panels.sigeph.SigEPhFilePanel method) plot_lws_vs_e0() (abipy.electrons.ebands.ElectronBands method) (abipy.eph.sigeph.SigEPhFile method) (abipy.eph.sigeph.SigEPhRobot method) (abipy.eph.sigeph.TdepElectronBands method) plot_mat() (abipy.dynamics.analyzer.Msdtt0 method) plot_maxw() (abipy.eph.wr.WrNcFile method) plot_mayaview() (abipy.core.structure.Structure method) plot_mdfs() (abipy.electrons.bse.MdfFile method) plot_mdftype_cplx() (abipy.electrons.bse.MultipleMdfPlotter method) plot_mobility() (abipy.eph.rta.RtaFile method) (abipy.eph.transportfile.TransportFile method) plot_mobility_kconv() (abipy.eph.rta.RtaRobot method) plot_networkx() (abipy.flowtk.flows.Flow method) plot_nuterms() (abipy.eph.a2f.A2f method) plot_pawdos_terms() (abipy.electrons.fatbands.FatBandsFile method) plot_pdos_site() (abipy.electrons.lobster.LobsterDoscarFile method) plot_phangmom() (abipy.dfpt.phonons.PhononBands method) plot_phbands() (abipy.core.mixins.Has_PhononBands method) plot_phbands_quad() (abipy.panels.ddb.DdbFilePanel method) plot_phbands_with_gruns() (abipy.dfpt.gruneisen.GrunsNcFile method) plot_phbs() (abipy.dfpt.qha.AbstractQHA method) plot_phdispl() (abipy.dfpt.phonons.PhononBands method) (abipy.dfpt.phonons.PhononBandsPlotter method) plot_phdispl_cartdirs() (abipy.dfpt.phonons.PhononBands method) plot_phdoses() (abipy.dfpt.gruneisen.GrunsNcFile method) plot_phonons_occ() (abipy.eph.eph_plotter.EphPlotter method) plot_pjdos_cartdirs_site() (abipy.dfpt.phonons.PhdosFile method) plot_pjdos_cartdirs_type() (abipy.dfpt.phonons.PhdosFile method) plot_pjdos_lview() (abipy.electrons.fatbands.FatBandsFile method) plot_pjdos_type() (abipy.dfpt.phonons.PhdosFile method) plot_pjdos_typeview() (abipy.electrons.fatbands.FatBandsFile method) plot_potentials() (abipy.ppcodes.oncv_plotter.MultiOncvPlotter method) (abipy.ppcodes.oncv_plotter.OncvPlotter method) plot_pots_at_qpoint() (abipy.eph.v1sym.V1symFile method) plot_projectors() (abipy.ppcodes.oncv_plotter.MultiOncvPlotter method) (abipy.ppcodes.oncv_plotter.OncvPlotter method) plot_q2vq() (abipy.electrons.psps.PspsFile method) (abipy.electrons.psps.PspsRobot method) plot_qpbands() (abipy.electrons.scissors.ScissorsBuilder method) plot_qpbands_ibz() (abipy.electrons.gw.SigresFile method) plot_qpbands_ibzt() (abipy.eph.sigeph.SigEPhFile method) plot_qpdata_conv_skb() (abipy.electrons.gw.SigresRobot method) (abipy.eph.sigeph.SigEPhRobot method) plot_qpdata_t() (abipy.eph.sigeph.SigEPhFile method) plot_qpe_vs_e0() (abipy.electrons.scissors.ScissorsBuilder method) plot_qpfield_vs_e0() (abipy.electrons.gw.SigresRobot method) (abipy.eph.sigeph.SigEPhRobot method) plot_qpgaps() (abipy.electrons.gw.SigresFile method) (abipy.panels.sigeph.SigEPhFilePanel method) plot_qpgaps_convergence() (abipy.electrons.gw.SigresRobot method) (abipy.eph.sigeph.SigEPhRobot method) plot_qpgaps_t() (abipy.eph.sigeph.SigEPhFile method) (abipy.eph.sigeph.SigEPhRobot method) plot_qps_vs_e0() (abipy.electrons.gw.SigresFile method) (abipy.eph.sigeph.SigEPhFile method) (abipy.panels.sigeph.SigEPhFilePanel method) plot_qpsolution() (abipy.eph.sigeph.EphSelfEnergy method) plot_qpsolution_sk() (abipy.eph.sigeph.SigEPhFile method) plot_qpsolution_skb() (abipy.eph.sigeph.SigEPhFile method) plot_qpsolution_sklineb() (abipy.eph.sigeph.SigEPhFile method) plot_qpt_distance() (abipy.dfpt.phonons.PhononBands method) plot_radial_wfs() (abipy.ppcodes.oncv_plotter.MultiOncvPlotter method) (abipy.ppcodes.oncv_plotter.OncvPlotter method) plot_reflectivity() (abipy.dfpt.ddb.DielectricTensorGenerator method) plot_scatter3d() (abipy.electrons.ebands.ElectronBands method) plot_scf_cycle() (abipy.eph.varpeq.Polaron method) plot_scratew() (abipy.eph.sigeph.SigEPhFile method) plot_scratew_skb() (abipy.eph.sigeph.SigEPhFile method) plot_selfenergy_conv() (abipy.electrons.gw.SigresRobot method) (abipy.eph.sigeph.SigEPhRobot method) plot_shg() (abipy.electrons.optic.OpticNcFile method) plot_shg_convergence() (abipy.electrons.optic.OpticRobot method) plot_sigma_berend() (abipy.dynamics.analyzer.DiffusionDataList method) plot_sigma_imag_axis() (abipy.electrons.gw.SigresFile method) plot_site_pairs_partial() (abipy.electrons.lobster.CoxpFile method) plot_site_pairs_total() (abipy.electrons.lobster.CoxpFile method) plot_spectral_function() (abipy.lumi.lineshape.Lineshape method) plot_spectral_functions() (abipy.electrons.gw.SigresFile method) plot_spilling() (abipy.electrons.fatbands.FatBandsFile method) plot_split() (abipy.electrons.ebands.ElectronBands method) plot_sqdt_atoms() (abipy.dynamics.analyzer.MdAnalyzer method) plot_sqdt_symbols() (abipy.dynamics.analyzer.MdAnalyzer method) (abipy.dynamics.analyzer.MultiMdAnalyzer method) plot_sqdt_symbols_tmax() (abipy.dynamics.analyzer.MdAnalyzer method) plot_stress_traj() (abipy.ml.aseml.AseResultsComparator method) plot_stresses() (abipy.ml.aseml.AseResultsComparator method) plot_structure() (in module abipy.display.mvtk) plot_tau() (abipy.ppcodes.oncv_plotter.OncvPlotter method) plot_tau_isoe() (abipy.eph.rta.RtaFile method) plot_tau_vtau() (abipy.eph.sigeph.SigEPhFile method) plot_tc_vs_mustar() (abipy.eph.a2f.A2f method) plot_tcore_qspace() (abipy.electrons.psps.PspsFile method) (abipy.electrons.psps.PspsRobot method) plot_tcore_rspace() (abipy.electrons.psps.PspsFile method) (abipy.electrons.psps.PspsRobot method) plot_tdep() (abipy.eph.sigeph.EphSelfEnergy method) plot_tensor() (abipy.dfpt.msqdos.MsqDos method) plot_thermal_expansion() (abipy.dfpt.qha_2D.QHA_2D method) plot_thermal_expansion_coeff() (abipy.dfpt.qha.AbstractQHA method) (abipy.dfpt.qha.AbstractQmeshAnalyzer method) (abipy.dfpt.vzsisa.Vzsisa method) plot_thermal_expansion_coeff_4th() (abipy.dfpt.vzsisa.Vzsisa method) plot_thermal_expansion_coeff_abc() (abipy.dfpt.qha.AbstractQHA method) (abipy.dfpt.vzsisa.Vzsisa method) plot_thermal_expansion_coeff_abc_4th() (abipy.dfpt.vzsisa.Vzsisa method) plot_thermal_expansion_coeff_angles() (abipy.dfpt.vzsisa.Vzsisa method) plot_thermal_expansion_coeff_angles_4th() (abipy.dfpt.vzsisa.Vzsisa method) plot_transitions() (abipy.electrons.ebands.ElectronBands method) plot_transport_tensors_mu() (abipy.eph.rta.RtaFile method) plot_uiso() (abipy.dfpt.msqdos.MsqDos method) plot_unfolded() (abipy.electrons.fold2bloch.Fold2BlochNcfile method) plot_unit_cell() (in module abipy.display.mvtk) (in module abipy.tools.plotting) plot_up_minus_down() (abipy.electrons.ebands.ElectronDos method) plot_vol_vs_t() (abipy.dfpt.qha.AbstractQHA method) (abipy.dfpt.qha.AbstractQmeshAnalyzer method) (abipy.dfpt.vzsisa.Vzsisa method) plot_vol_vs_t_4th() (abipy.dfpt.vzsisa.Vzsisa method) plot_vs_e0() (abipy.eph.sigeph.QpTempList method) plot_vs_w() (abipy.dfpt.ddb.DielectricTensorGenerator method) plot_vsound() (abipy.panels.ddb.DdbFilePanel method) plot_vtau() (abipy.ppcodes.oncv_plotter.OncvPlotter method) plot_vtk() (abipy.core.structure.Structure method) plot_vvtau_dos() (abipy.eph.rta.RtaFile method) (abipy.eph.transportfile.TransportFile method) plot_wigner_seitz() (in module abipy.display.mvtk) plot_with_a2f() (abipy.eph.a2f.A2fFile method) plot_with_ebands() (abipy.wannier90.abiwan.AbiwanFile method) plot_with_edos() (abipy.electrons.ebands.ElectronBands method) plot_with_lambda() (abipy.eph.a2f.A2f method) plot_with_phdos() (abipy.dfpt.phonons.PhononBands method) plot_without_asr_dipdip() (abipy.panels.ddb.DdbFilePanel method) (abipy.panels.ddb.DdbRobotPanel method) plot_xrd() (abipy.core.structure.Structure method) plot_xvals_or_xstr_ax() (abipy.abio.robots.Robot static method) plot_xy_with_hue() (abipy.abio.robots.Robot static method) plotly() (abipy.core.func1d.Function1D method) (abipy.core.kpoints.KpointList method) (abipy.core.structure.Structure method) (abipy.dfpt.ddb.DielectricTensorGenerator method) (abipy.dfpt.phonons.PhononBands method) (abipy.dfpt.phonons.PhononDos method) (abipy.dfpt.vsound.SoundVelocity method) (abipy.dynamics.hist.HistFile method) (abipy.electrons.ebands.ElectronBands method) (abipy.electrons.ebands.ElectronBandsPlotter method) (abipy.electrons.ebands.ElectronDos method) (abipy.electrons.ebands.ElectronDosPlotter method) (abipy.flowtk.abiinspect.ScfCycle method) plotly_bz() (abipy.core.structure.Structure method) plotly_dos_idos() (abipy.dfpt.phonons.PhononDos method) (abipy.electrons.ebands.ElectronDos method) plotly_energies() (abipy.dynamics.hist.HistFile method) plotly_expose() (abipy.core.mixins.NotebookWriter method) plotly_fatbands() (abipy.dfpt.phonons.PhononBands method) plotly_fatbands_lview() (abipy.electrons.fatbands.FatBandsFile method) plotly_fatbands_typeview() (abipy.electrons.fatbands.FatBandsFile method) plotly_fatbands_with_pjdos() (abipy.electrons.fatbands.FatBandsFile method) plotly_fit_freqs_dir() (abipy.dfpt.vsound.SoundVelocity method) plotly_harmonic_thermo() (abipy.dfpt.phonons.PhononDos method) (abipy.dfpt.phonons.PhononDosPlotter method) plotly_pjdos_lview() (abipy.electrons.fatbands.FatBandsFile method) plotly_pjdos_type() (abipy.dfpt.phonons.PhdosFile method) plotly_pjdos_typeview() (abipy.electrons.fatbands.FatBandsFile method) plotly_template (abipy.panels.core.AbipyParameterized attribute) plotly_traces() (abipy.core.func1d.Function1D method) (abipy.dfpt.phonons.PhononBands method) (abipy.dynamics.hist.HistFile method) (abipy.electrons.ebands.ElectronBands method) (abipy.electrons.ebands.ElectronDos method) plotly_up_minus_down() (abipy.electrons.ebands.ElectronDos method) plotly_with_edos() (abipy.electrons.ebands.ElectronBands method) plotly_with_phdos() (abipy.dfpt.phonons.PhononBands method) plottable_from_outfile() (in module abipy.flowtk.abiinspect) plotters (abipy.ppcodes.oncv_plotter.MultiOncvPlotter property) ply() (in module abipy.panels.core) pmg_pickle_dump() (in module abipy.tools.serialization) pmg_pickle_load() (in module abipy.tools.serialization) pmg_serialize() (in module abipy.tools.serialization) PmgPickler (class in abipy.tools.serialization) PmgUnpickler (class in abipy.tools.serialization) pn_serve_parser() (in module abipy.tools.cli_parsers) Polarizability (class in abipy.electrons.scr) Polaron (class in abipy.eph.varpeq) polaron_spin() (abipy.eph.varpeq.VarpeqFile method) pool_nprocs_pmode() (in module abipy.tools.parallel) pop_irdvars() (abipy.abio.inputs.AbinitInput method) pop_key() (abipy.dynamics.analyzer.ArrheniusPlotter method) pop_label() (abipy.abio.robots.Robot method) pop_par_vars() (abipy.abio.inputs.AbinitInput method) pop_tolerances() (abipy.abio.inputs.AbinitInput method) pop_vars() (abipy.abio.inputs.AbstractInput method) pos() (abipy.flowtk.works.Work method) pos_str (abipy.flowtk.works.Work property) poscar_string (abipy.core.structure.Structure property) posneg_marker() (abipy.tools.plotting.Marker method) postpone_on_all_ok() (abipy.flowtk.works.Work method) potentials() (abipy.ppcodes.oncv_parser.OncvParser method) PotNcFile (class in abipy.electrons.denpot) PowderIntensity (class in abipy.dfpt.raman) pprint() (abipy.core.atom.RadialFunction method) pressure (abipy.ml.aseml.AseResults property) pressure() (abipy.electrons.gsr.GsrFile method) print_atoms() (in module abipy.ml.aseml) print_bz2ibz() (abipy.core.kpoints.Ktables method) print_dataframe() (in module abipy.tools.printing) print_doc() (in module abipy.tools.notebooks) print_hardware_system_info() (in module abipy.tools.devtools) print_neighbors() (abipy.core.structure.Structure method) print_qps() (abipy.electrons.gw.SigresFile method) print_results() (abipy.core.restapi.DatabaseStructures method) print_source() (in module abipy.tools.notebooks) print_source_in_module() (in module abipy.tools.notebooks) print_stats_arr() (in module abipy.tools.numtools) processes (abipy.flowtk.works.Work property) Product (class in abipy.flowtk.nodes) product() (abipy.abio.inputs.AbinitInput method) product_dict() (in module abipy.abio.inputs) products (abipy.flowtk.nodes.FileNode property) products() (abipy.flowtk.nodes.Dependency method) profile() (in module abipy.tools.devtools) projectors() (abipy.ppcodes.oncv_parser.OncvParser method) prune_ord() (in module abipy.tools.numtools) ps (abipy.ppcodes.oncv_parser.AePsNamedTuple attribute) pseudo() (in module abipy.data) pseudos (abipy.abio.inputs.AbinitInput property) (abipy.abio.inputs.MultiDataset property) (abipy.flowtk.tasks.AbinitTask property) pseudos() (in module abipy.data) pseudos_abivars (abipy.abio.inputs.AbinitInput property) psfile (abipy.ppcodes.oncv_parser.OncvParser attribute) psp8_get_densities() (in module abipy.ppcodes.oncv_plotter) PspsFile (class in abipy.electrons.psps) PspsReader (class in abipy.electrons.psps) PspsRobot (class in abipy.electrons.psps) push_exceptions() (abipy.flowtk.nodes.NodeResults method) pws() (abipy.panels.core.AbipyParameterized method) pws_col() (abipy.panels.core.AbipyParameterized method) pws_row() (abipy.panels.core.AbipyParameterized method) PWWaveFunction (class in abipy.waves.pwwave) pyfile (abipy.flowtk.flows.Flow property) PyFlowScheduler (class in abipy.flowtk.launcher) pygmentize() (abipy.tools.devtools.HtmlDiff method) PyLauncher (class in abipy.flowtk.launcher) PythonScript (class in abipy.tools.iotools)

Q

qadapter (abipy.flowtk.tasks.TaskManager property) qads (abipy.flowtk.tasks.TaskManager property) qfrac_coords (abipy.electrons.bse.DielectricFunction property) (abipy.electrons.bse.MdfFile property) QHA (class in abipy.dfpt.qha) QHA3P (class in abipy.dfpt.qha) QHA3PF (class in abipy.dfpt.qha) QHA_2D (class in abipy.dfpt.qha_2D) QHA_ZSISA (class in abipy.dfpt.qha_general_stress) QHAQmeshAnalyzer (class in abipy.dfpt.qha) qibz() (abipy.dfpt.gruneisen.GrunsNcFile method) qindex() (abipy.dfpt.ddb.DdbFile method) (abipy.dfpt.phonons.PhbstFile method) (abipy.dfpt.phonons.PhononBands method) qindex_qpoint() (abipy.dfpt.phonons.PhbstFile method) (abipy.dfpt.phonons.PhononBands method) qp_dirgaps_otms_t() (abipy.eph.sigeph.SigEPhFile method) qp_dirgaps_t() (abipy.eph.sigeph.SigEPhFile method) qpeme0 (abipy.electrons.gw.QPState property) qpeme0() (abipy.eph.sigeph.QpTempState method) qpgaps() (abipy.electrons.gw.SigresFile method) qplist_spin() (abipy.electrons.gw.SigresFile method) (abipy.eph.sigeph.SigEPhFile method) qpoints (abipy.dfpt.ddb.DdbFile property) (abipy.dfpt.phonons.PhbstFile property) (abipy.electrons.bse.MdfFile property)

qpoints() (abipy.electrons.bse.MdfReader method) (abipy.eph.v1sym.V1symFile method) (abipy.eph.varpeq.Polaron method) QPState (class in abipy.electrons.gw) qpt_cart_coords (abipy.dfpt.frozen_phonons.FrozenPhonon property) QptdmWork (class in abipy.flowtk.works) QpTempList (class in abipy.eph.sigeph) QpTempState (class in abipy.eph.sigeph) qptrlatt() (abipy.dfpt.phonons.PhdosFile method) QState (class in abipy.core.atom) QTYPE (abipy.flowtk.qjobs.BlueGeneJob attribute) (abipy.flowtk.qjobs.MoabJob attribute) (abipy.flowtk.qjobs.PbsProJob attribute) (abipy.flowtk.qjobs.QueueJob attribute) (abipy.flowtk.qjobs.SgeJob attribute) (abipy.flowtk.qjobs.ShellJob attribute) (abipy.flowtk.qjobs.SlurmJob attribute) (abipy.flowtk.qjobs.TorqueJob attribute) quadquad (abipy.panels.ddb.PanelWithAnaddbParams attribute) quadratic_fit_function() (in module abipy.dfpt.frozen_phonons) QueueJob (class in abipy.flowtk.qjobs) quote (abipy.dynamics.analyzer.DiffusionData attribute)

R

r2f2_integral() (abipy.core.atom.RadialFunction method) r2f_integral() (abipy.core.atom.RadialFunction method) radial_wfs() (abipy.ppcodes.oncv_parser.OncvParser method) RadialFunction (class in abipy.core.atom) RadialWaveFunction (class in abipy.core.atom) Raman (class in abipy.dfpt.raman) random() (abipy.core.mesh3d.Mesh3D method) range_from_str() (in module abipy.tools.cli_parsers) rapidfire() (abipy.flowtk.flows.Flow method) (abipy.flowtk.launcher.PyLauncher method) rc_l() (abipy.ppcodes.oncv_parser.OncvParser method) rc_list() (in module abipy.core.kpoints) re_fan0 (abipy.eph.sigeph.QpTempState property) re_qpe (abipy.electrons.gw.QPState property) re_qpe() (abipy.eph.sigeph.QpTempState method) re_sig0() (abipy.eph.sigeph.QpTempState method) read() (abipy.flowtk.utils.File method) read_a2f() (abipy.eph.a2f.A2fReader method) read_a2feph_skb() (abipy.eph.sigeph.SigmaPhReader method) read_all_structures() (abipy.dynamics.hist.HistReader method) read_allqps() (abipy.eph.sigeph.SigmaPhReader method) read_amu_symbol() (abipy.iotools.ETSF_Reader method) read_amuz_dict() (abipy.dfpt.gruneisen.GrunsReader method) read_cart_forces() (abipy.dynamics.hist.HistReader method) read_cart_stress_tensors() (abipy.dynamics.hist.HistReader method) read_coresd() (abipy.electrons.psps.PspsReader method) read_cumulant_skb() (abipy.eph.cumulant.CumulantPhReader method) read_ebands_which_fixed() (abipy.eph.gpath.GpathReader method) read_edos() (abipy.eph.a2f.A2fReader method) read_eelf() (abipy.electrons.scr.ScrReader method) read_emacro_lf() (abipy.electrons.scr.ScrReader method) read_emacro_nlf() (abipy.electrons.scr.ScrReader method) read_eterms() (abipy.dynamics.hist.HistReader method) read_etotals() (abipy.flowtk.works.Work method) read_exc_mdf() (abipy.electrons.bse.MdfReader method) read_gwnlf_mdf() (abipy.electrons.bse.MdfReader method) read_lineps() (abipy.electrons.optic.OpticReader method) read_msq_dos() (abipy.dfpt.phonons.PhdosReader method) read_ngfft3() (abipy.iotools.ETSF_Reader method) read_non_anal_from_file() (abipy.dfpt.phonons.PhononBands method) read_params() (abipy.electrons.bse.MdfReader method) (abipy.electrons.scr.ScrReader method) read_phbands() (abipy.eph.gpath.GpathReader method) read_phbands_on_qpath() (abipy.dfpt.gruneisen.GrunsReader method) read_phbands_qpath() (abipy.eph.a2f.A2fReader method) read_phdos() (abipy.dfpt.phonons.PhdosReader method) read_phdoses() (abipy.dfpt.gruneisen.GrunsReader method) read_phgamma_qpath() (abipy.eph.a2f.A2fReader method) read_phlambda_qpath() (abipy.eph.a2f.A2fReader method) read_pjdos_atdir() (abipy.dfpt.phonons.PhdosReader method) read_pjdos_symbol_dict() (abipy.dfpt.phonons.PhdosReader method) read_pjdos_symbol_xyz_dict() (abipy.dfpt.phonons.PhdosReader method) read_pjdos_type() (abipy.dfpt.phonons.PhdosReader method) read_projectors() (abipy.electrons.psps.PspsReader method) read_qp() (abipy.eph.cumulant.CumulantPhReader method) (abipy.eph.sigeph.SigmaPhReader method) read_qplist_sk() (abipy.eph.sigeph.SigmaPhReader method) read_reduced_forces() (abipy.dynamics.hist.HistReader method) read_rpanlf_mdf() (abipy.electrons.bse.MdfReader method) read_sigee_skb() (abipy.electrons.gw.SigresFile method) read_sigeph_skb() (abipy.eph.sigeph.SigmaPhReader method) read_string() (abipy.iotools.ETSF_Reader method) read_structure() (abipy.iotools.ETSF_Reader method) read_structure_postac_ucmats() (in module abipy.dynamics.analyzer) read_structures() (abipy.dfpt.gruneisen.GrunsReader method) read_tcorespl() (abipy.electrons.psps.PspsReader method) read_tensor3_terms() (abipy.electrons.optic.OpticReader method) read_v1_at_iq() (abipy.eph.v1sym.V1symFile method) read_vlspl() (abipy.electrons.psps.PspsReader method) read_wggmat() (abipy.electrons.scr.ScrReader method) read_wslice() (abipy.electrons.scr.ScrReader method) readlines() (abipy.flowtk.utils.File method) real (abipy.core.func1d.Function1D property) received_signal() (abipy.flowtk.qjobs.QueueJob method) reciprocal_lattice (abipy.core.kpoints.KpointList property) (abipy.core.structure.Structure property) (abipy.electrons.ebands.ElectronBands property) reduce_dilatmx() (abipy.flowtk.tasks.RelaxTask method) ref_file() (in module abipy.data) ref_files() (in module abipy.data) refine() (abipy.core.structure.Structure method) reflectivity() (abipy.dfpt.ddb.DielectricTensorGenerator method) (abipy.tools.tensors.DielectricTensor method) (in module abipy.electrons.optic) register() (abipy.flowtk.works.Work method) register_decorator() (abipy.abio.inputs.AbinitInput method) register_flow_exception() (abipy.flowtk.launcher.MultiFlowScheduler method) register_gridfs_files() (abipy.flowtk.nodes.NodeResults method) register_task() (abipy.flowtk.flows.Flow method) (abipy.flowtk.works.Work method) register_work() (abipy.flowtk.flows.Flow method) register_work_from_cbk() (abipy.flowtk.flows.Flow method) relativistic (abipy.ppcodes.oncv_parser.OncvParser property) relax_atoms() (in module abipy.ml.aseml) Relaxation (class in abipy.flowtk.abiinspect)

RelaxConvergenceWarning (class in abipy.flowtk.events) RelaxScanner (class in abipy.ml.relax_scanner) RelaxScannerAnalyzer (class in abipy.ml.relax_scanner) RelaxTask (class in abipy.flowtk.tasks) RelaxWork (class in abipy.flowtk.works) reload() (abipy.flowtk.flows.Flow method) relpath (abipy.flowtk.utils.Directory property) (abipy.flowtk.utils.File property) relworkdir (abipy.flowtk.nodes.Node property) remap_labels() (abipy.abio.robots.Robot method) remove() (abipy.abio.robots.Robot method) (abipy.flowtk.utils.File method) remove_block() (abipy.dfpt.ddb.DdbFile method) remove_deps() (abipy.flowtk.nodes.Node method) remove_duplicated() (abipy.core.kpoints.KpointList method) remove_exts() (abipy.flowtk.utils.Directory method) remove_flows_with_status() (abipy.flowtk.launcher.MultiFlowScheduler method) remove_state() (abipy.core.atom.AtomicConfiguration method) remove_tags() (abipy.abio.inputs.AbinitInput method) (abipy.abio.inputs.MultiDataset method) remove_vars() (abipy.abio.inputs.AbstractInput method) rename_abiext() (abipy.flowtk.utils.Directory method) replace_block_for_qpoint() (abipy.dfpt.ddb.DdbFile method) replicate() (abipy.abio.inputs.AbinitInput method) replicate_input() (abipy.abio.inputs.MultiDataset class method) report_exception() (abipy.flowtk.events.EventsParser method) repr_html_from_abinit_string() (in module abipy.abio.abivars_db) resample_step() (abipy.dynamics.analyzer.MdAnalyzer method) resample_time() (abipy.dynamics.analyzer.MdAnalyzer method) reset() (abipy.flowtk.launcher.ScriptEditor method) (abipy.ml.aseml.CalcBuilder method) reset_from_scratch() (abipy.flowtk.tasks.AbinitTask method) (abipy.flowtk.tasks.OpticTask method) reshape() (abipy.core.mesh3d.Mesh3D method) residm() (abipy.electrons.gsr.GsrFile method) RESPFN (abipy.abio.enums.RUNL attribute) restart() (abipy.flowtk.tasks.AbinitTask method) (abipy.flowtk.tasks.NscfTask method) (abipy.flowtk.tasks.RelaxTask method) (abipy.flowtk.tasks.ScfTask method) (abipy.flowtk.tasks.SigmaTask method) restart_md() (in module abipy.ml.aseml) Results (abipy.flowtk.flows.Flow attribute) (abipy.flowtk.nodes.Node attribute) (abipy.flowtk.tasks.AbinitTask attribute) retcode (abipy.ppcodes.ppgen.OncvGenerator attribute) return_straceback_ifexc() (in module abipy.tools.decorators) return_to_top_html() (in module abipy.panels.core) rm_and_build() (abipy.flowtk.flows.Flow method) rm_indatadir() (abipy.flowtk.works.Work method) rm_multiple_spaces() (in module abipy.tools.text) rm_outdatadir() (abipy.flowtk.works.Work method) rm_tmpdatadir() (abipy.flowtk.works.Work method) rmax (abipy.core.atom.RadialFunction property) rmtree() (abipy.flowtk.flows.Flow method) (abipy.flowtk.utils.Directory method) (abipy.flowtk.works.Work method) Robot (class in abipy.abio.robots) RobotPythonScript (class in abipy.abio.robots) RobotWithFileInput (class in abipy.panels.ddb) rocksalt() (abipy.core.structure.Structure class method) root_inv (abipy.core.symmetries.LatticeRotation property) roots() (abipy.core.atom.RadialFunction method) RPA_ENERGY (abipy.abio.enums.GWR_TASK attribute) rpanlf_mdf() (abipy.electrons.bse.MdfFile method) rpoint() (abipy.core.mesh3d.Mesh3D method) rpoints() (abipy.core.mesh3d.Mesh3D method) rreplace() (in module abipy.tools.text) rsize (abipy.core.atom.RadialFunction property) RtaFile (class in abipy.eph.rta) RtaRobot (class in abipy.eph.rta) RTTDDFT (abipy.abio.enums.RUNL attribute) run() (abipy.electrons.lruj.LrujAnalyzer method) (abipy.ml.aseml.FrozenPhononMl method) (abipy.ml.aseml.GsMl method) (abipy.ml.aseml.MlCompareNNs method) (abipy.ml.aseml.MlCwfEos method) (abipy.ml.aseml.MlGsList method) (abipy.ml.aseml.MlMd method) (abipy.ml.aseml.MlNeb method) (abipy.ml.aseml.MlOrderer method) (abipy.ml.aseml.MlRelaxer method) (abipy.ml.aseml.MlValidateWithAbinitio method) (abipy.ml.aseml.MolecularDynamics method) (abipy.ml.aseml.MultiMlNeb method) (abipy.ml.ml_phonopy.MlPhonopy method) (abipy.ml.ml_phonopy.MlPhonopyWithDDB method) (abipy.ml.relax_scanner.RelaxScanner method) run_in_shell() (abipy.abio.inputs.AbinitInput method) run_nn_name_set_name() (abipy.ml.aseml.MlCwfEos method) run_pair() (abipy.ml.relax_scanner.RelaxScannerAnalyzer method) run_qlist() (abipy.dfpt.qha.QHAQmeshAnalyzer method) run_start_count() (abipy.ml.relax_scanner.RelaxScanner method) RUNL (class in abipy.abio.enums) runlevel (abipy.abio.inputs.AbinitInput property) RX_MODE (class in abipy.ml.aseml)

S

s2itup() (in module abipy.core.abinit_units) S_ABICRITICAL (abipy.flowtk.nodes.Node attribute) S_abs() (abipy.lumi.deltaSCF.DeltaSCF method) S_CANCELLED (abipy.flowtk.qjobs.QueueJob attribute) S_COMPLETED (abipy.flowtk.qjobs.QueueJob attribute) S_DONE (abipy.flowtk.nodes.Node attribute) S_em() (abipy.lumi.deltaSCF.DeltaSCF method) S_ERROR (abipy.flowtk.nodes.Node attribute) S_FAILED (abipy.flowtk.qjobs.QueueJob attribute) S_hbarOmega() (abipy.lumi.lineshape.Lineshape method) S_INIT (abipy.flowtk.nodes.Node attribute) S_LOCKED (abipy.flowtk.nodes.Node attribute) S_NODEFAIL (abipy.flowtk.qjobs.QueueJob attribute) S_nu() (abipy.lumi.lineshape.Lineshape method) S_OK (abipy.flowtk.nodes.Node attribute) S_PENDING (abipy.flowtk.qjobs.QueueJob attribute) S_PREEMPTED (abipy.flowtk.qjobs.QueueJob attribute) S_QCRITICAL (abipy.flowtk.nodes.Node attribute) S_READY (abipy.flowtk.nodes.Node attribute) S_RESIZING (abipy.flowtk.qjobs.QueueJob attribute) S_RUN (abipy.flowtk.nodes.Node attribute) S_RUNNING (abipy.flowtk.qjobs.QueueJob attribute) S_SUB (abipy.flowtk.nodes.Node attribute) S_SUSPENDED (abipy.flowtk.qjobs.QueueJob attribute) S_TIMEOUT (abipy.flowtk.qjobs.QueueJob attribute) S_tot() (abipy.lumi.lineshape.Lineshape method) S_UNCONVERGED (abipy.flowtk.nodes.Node attribute) S_UNKNOWN (abipy.flowtk.qjobs.QueueJob attribute) saturation_slider() (in module abipy.display.utils) save_lastnode_id() (in module abipy.flowtk.nodes) savefig() (abipy.ml.aseml.MlBase method) sbatch() (abipy.flowtk.qutils.SlurmJobArray method) (abipy.ml.extxyz_generator.SinglePointRunner method) scale_lattice() (abipy.core.structure.Structure method) scan() (abipy.ppcodes.oncv_parser.OncvParser method) scan_dir() (abipy.abio.robots.Robot method) scattering_wfs() (abipy.ppcodes.oncv_parser.OncvParser method) scdims (abipy.flowtk.abiphonopy.PhonopyGruneisenWork attribute) (abipy.flowtk.abiphonopy.PhonopyWork attribute) scf_df_state() (abipy.eph.varpeq.Polaron method) scf_for_phonons() (in module abipy.abio.factories) scf_phonons_inputs() (in module abipy.abio.factories) scf_piezo_elastic_inputs() (in module abipy.abio.factories) scf_tolvar (abipy.abio.inputs.AbinitInput property) ScfConvergenceWarning (class in abipy.flowtk.events) ScfCycle (class in abipy.flowtk.abiinspect) ScfTask (class in abipy.flowtk.tasks) Scissors (class in abipy.electrons.scissors) scissors_spin (abipy.electrons.scissors.ScissorsBuilder property) ScissorsBuilder (class in abipy.electrons.scissors) SCREENING (abipy.abio.enums.RUNL attribute) ScreeningWork (class in abipy.flowtk.gw_works) ScrFile (class in abipy.electrons.scr) ScriptEditor (class in abipy.flowtk.launcher) ScrReader (class in abipy.electrons.scr) second_derivative_energy_v() (abipy.dfpt.vzsisa.Vzsisa method) seek() (abipy.flowtk.abiinspect.YamlTokenizer method) Segment (class in abipy.electrons.effmass_analyzer) select_band_edges() (abipy.electrons.effmass_analyzer.EffMassAnalyzer method) select_cbm() (abipy.electrons.effmass_analyzer.EffMassAnalyzer method) select_files() (abipy.flowtk.tasks.AbinitTask method) select_kpoint_band() (abipy.electrons.effmass_analyzer.EffMassAnalyzer method) select_qadapter() (abipy.flowtk.tasks.TaskManager method) select_tasks() (abipy.flowtk.flows.Flow method) select_vbm() (abipy.electrons.effmass_analyzer.EffMassAnalyzer method) select_with_condition() (abipy.flowtk.tasks.ParalHints method) send_signal() (abipy.flowtk.nodes.Node method) serve() (abipy.panels.flows.FlowMultiPageApp method) set_2nd_ord_data() (abipy.dfpt.ddb.DdbFile method) set_abi_spacegroup() (abipy.core.structure.Structure method) set_abinit_template() (in module abipy.panels.core) set_abipy_meta_json() (abipy.flowtk.nodes.Node method) set_autokmesh() (abipy.abio.inputs.AbinitInput method) set_autoqmesh() (abipy.abio.inputs.AnaddbInput method) set_autospinat() (abipy.abio.inputs.AbinitInput method) set_axlims() (in module abipy.tools.plotting) set_basis_functions_from_abinit_pseudos() (abipy.electrons.lobster.LobsterInput method) set_basis_functions_from_potcar() (abipy.electrons.lobster.LobsterInput method) set_color_symbol() (abipy.dynamics.analyzer.MdAnalyzer method) set_comment() (abipy.abio.inputs.AbinitInput method) set_cutoffs_for_accuracy() (abipy.abio.inputs.AbinitInput method) set_energies() (abipy.eph.cumulant.CumulantQpTempState method) set_eos() (abipy.dfpt.qha.AbstractQHA method) (abipy.dfpt.qha.AbstractQmeshAnalyzer method) (abipy.dfpt.vzsisa.Vzsisa method) set_fermie() (abipy.electrons.ebands.ElectronBands method) set_fermie_from_edos() (abipy.electrons.ebands.ElectronBands method) set_fermie_to_vbm (abipy.panels.core.PanelWithElectronBands attribute) set_fermie_to_vbm() (abipy.electrons.ebands.ElectronBands method) set_flow() (abipy.flowtk.works.Work method) set_gamma_sampling() (abipy.abio.inputs.AbinitInput method) set_garbage_collector() (abipy.flowtk.flows.Flow method) set_gc() (abipy.flowtk.nodes.Node method) set_kmesh() (abipy.abio.inputs.AbinitInput method) set_kmesh_nband_and_occ() (abipy.abio.inputs.AbinitInput method) set_kpath() (abipy.abio.inputs.AbinitInput method) (abipy.wannier90.win.Wannier90Input method) set_kptgw() (abipy.abio.inputs.AbinitInput method) set_loglevel() (in module abipy.tools.cli_parsers) set_manager() (abipy.flowtk.works.Work method) set_max_nprocs() (in module abipy.tools.parallel) set_mem_per_proc() (abipy.flowtk.tasks.TaskManager method) set_mnemonics() (abipy.abio.inputs.AbinitInput method) set_mpi_procs() (abipy.flowtk.tasks.TaskManager method) set_name() (abipy.core.kpoints.Kpoint method) (abipy.flowtk.nodes.Node method) set_node_id() (abipy.flowtk.nodes.Node method) set_omp_threads() (abipy.flowtk.tasks.TaskManager method) set_pconfs() (abipy.flowtk.tasks.AbinitTask method) set_phdos_qmesh() (abipy.abio.inputs.AbinitInput method) set_phonopy_obj_from_ananc() (abipy.dfpt.phonons.PhononBands method) set_pyfile() (abipy.flowtk.flows.Flow method) set_qpath() (abipy.abio.inputs.AbinitInput method) (abipy.abio.inputs.AnaddbInput method) set_readme() (abipy.flowtk.nodes.Node method) set_scf_nband() (abipy.abio.inputs.AbinitInput method) set_scf_nband_semicond() (abipy.abio.inputs.AbinitInput method) set_spectator_mode() (abipy.flowtk.flows.Flow method) set_spell_check() (abipy.abio.inputs.AbinitInput method) (abipy.abio.inputs.AnaddbInput method) (abipy.wannier90.win.Wannier90Input method) set_spin_mode() (abipy.abio.inputs.AbinitInput method) set_spinat_from_symbols() (abipy.abio.inputs.AbinitInput method) set_status() (abipy.flowtk.flows.Flow method) set_status_exitcode_signal() (abipy.flowtk.qjobs.QueueJob method) set_structure() (abipy.abio.inputs.AbinitInput method) set_style() (abipy.dynamics.analyzer.ArrheniusPlotter method) set_temp_colormap() (abipy.dynamics.analyzer.MultiMdAnalyzer method) set_usepawu() (abipy.abio.inputs.AbinitInput method) set_user_config_taskmanager() (in module abipy.flowtk.tasks) set_user_message() (abipy.flowtk.nodes.Node method) set_vars() (abipy.abio.inputs.AbstractInput method) (abipy.flowtk.tasks.OpticTask method) set_vars_ifnotin() (abipy.abio.inputs.AbstractInput method) set_weight() (abipy.core.kpoints.Kpoint method) set_workdir() (abipy.flowtk.flows.Flow method) (abipy.flowtk.tasks.OpticTask method) (abipy.flowtk.works.Work method) setup() (abipy.flowtk.tasks.AbinitTask method) (abipy.flowtk.tasks.AnaddbTask method) (abipy.flowtk.tasks.GwrTask method) (abipy.flowtk.tasks.NscfTask method) (abipy.flowtk.tasks.OpticTask method) (abipy.flowtk.works.Work method) sfind_ind_val() (in module abipy.dynamics.analyzer) SgeJob (class in abipy.flowtk.qjobs) shape (abipy.dfpt.phonons.PhononBands property) (abipy.electrons.ebands.ElectronBands property) shebang() (abipy.flowtk.launcher.ScriptEditor method) shell (abipy.flowtk.launcher.ScriptEditor property) ShellJob (class in abipy.flowtk.qjobs) ShellScript (class in abipy.tools.iotools) show_abierrors() (abipy.flowtk.flows.Flow method) show_autoparal() (abipy.flowtk.flows.Flow method) show_bz() (abipy.core.mixins.Has_Structure method) show_corrections() (abipy.flowtk.flows.Flow method) show_dependencies() (abipy.flowtk.flows.Flow method) show_event_handlers() (abipy.flowtk.nodes.Node method) show_events() (abipy.flowtk.flows.Flow method) show_exception() (in module abipy.panels.core) show_files() (abipy.abio.robots.Robot method) show_history() (abipy.flowtk.flows.Flow method) show_info() (abipy.flowtk.flows.Flow method) show_inputs() (abipy.flowtk.flows.Flow method) show_qouts() (abipy.flowtk.flows.Flow method) show_receivers() (abipy.flowtk.flows.Flow method) show_status() (abipy.flowtk.flows.Flow method) show_summary() (abipy.flowtk.flows.Flow method) show_tricky_tasks() (abipy.flowtk.flows.Flow method) shutdown() (abipy.flowtk.launcher.PyFlowScheduler method) SigEPhFile (class in abipy.eph.sigeph) SigEPhFilePanel (class in abipy.panels.sigeph) SigEPhRobot (class in abipy.eph.sigeph) sigkpt2index() (abipy.eph.sigeph.SigEPhFile method) (abipy.eph.sigeph.SigmaPhReader method) SIGMA (abipy.abio.enums.RUNL attribute) sigma_berend (abipy.dynamics.analyzer.DiffusionData attribute) sigma_berend() (in module abipy.dynamics.analyzer) sigma_kpoints (abipy.electrons.gw.SigresFile property) (abipy.eph.sigeph.SigEPhFile property) SigmaBerend (class in abipy.dynamics.analyzer) SigmaConvWork (class in abipy.flowtk.works) SigmaPhReader (class in abipy.eph.sigeph) sigmas1 (abipy.dynamics.analyzer.SigmaBerend attribute) sigmas2 (abipy.dynamics.analyzer.SigmaBerend attribute) SigmaTask (class in abipy.flowtk.tasks) sign_sqrtekb (abipy.electrons.psps.VnlProjector property) sigres_path (abipy.flowtk.tasks.SigmaTask property) SigresFile (class in abipy.electrons.gw) SigresRobot (class in abipy.electrons.gw) silence_tensorflow() (in module abipy.ml.aseml) single_shot() (abipy.flowtk.flows.Flow method) (abipy.flowtk.launcher.PyLauncher method)

SinglePointRunner (class in abipy.ml.extxyz_generator) site_pairs_partial (abipy.electrons.lobster.CoxpFile property) site_pairs_total (abipy.electrons.lobster.CoxpFile property) site_symmetries() (abipy.core.structure.Structure method) SiteSymmetries (class in abipy.core.site_symmetries) size_slider() (in module abipy.display.utils) skb (abipy.electrons.gw.QPState property) skb() (abipy.eph.sigeph.QpTempState method) skb_iter() (abipy.electrons.ebands.ElectronBands method) skw_ebands_kpath (abipy.panels.core.PanelWithElectronBands attribute) skw_ebands_kpath_fileinput (abipy.panels.core.PanelWithElectronBands attribute) skw_line_density (abipy.panels.core.PanelWithElectronBands attribute) skw_lpratio (abipy.panels.core.PanelWithElectronBands attribute) SkwInterpolator (class in abipy.core.skw) slideshow() (abipy.flowtk.abiinspect.CyclesPlotter method) (abipy.flowtk.abiinspect.Relaxation method) SlotPickleMixin (class in abipy.core.mixins) slurm_get_jobs() (in module abipy.flowtk.qutils) slurm_parse_timestr() (in module abipy.flowtk.qutils) slurm_sbatch() (in module abipy.flowtk.qutils) slurm_script_name (abipy.ml.extxyz_generator.SinglePointRunner attribute) slurm_write_and_sbatch() (in module abipy.flowtk.qutils) SlurmJob (class in abipy.flowtk.qjobs) SlurmJobArray (class in abipy.flowtk.qutils) SmearingDecorator (class in abipy.abio.decorators) smooth() (in module abipy.tools.numtools) software_stack() (in module abipy.abilab) sort_and_groupby() (in module abipy.tools.numtools) sort_by_e0() (abipy.eph.sigeph.QpTempList method) sort_by_efficiency() (abipy.flowtk.tasks.ParalHints method) sort_by_mem_per_proc() (abipy.flowtk.tasks.ParalHints method) sort_by_speedup() (abipy.flowtk.tasks.ParalHints method) sortby() (abipy.abio.robots.Robot method) sortby_label() (abipy.abio.robots.Robot static method) SoundVelocity (class in abipy.dfpt.vsound) spacing() (abipy.electrons.ebands.ElectronBands method) SparseHistogram (class in abipy.flowtk.utils) species_by_znucl (abipy.core.structure.Structure property) SpectatorError (abipy.flowtk.nodes.Node attribute) SpectatorNodeError spell_check (abipy.abio.inputs.AbinitInput property) (abipy.abio.inputs.AnaddbInput property) (abipy.wannier90.win.Wannier90Input property) spget_equivalent_atoms() (abipy.core.structure.Structure method) spget_lattice_type() (abipy.core.structure.Structure method) spget_site_symmetries() (abipy.core.structure.Structure method) spget_summary() (abipy.core.structure.Structure method) spglib_summary() (abipy.panels.structure.StructurePanel method) spgset_abi_spacegroup() (abipy.core.structure.Structure method) spin (abipy.eph.gstore.Gqk attribute) (abipy.eph.varpeq.Polaron attribute) spin2tex (abipy.electrons.fatbands.FatBandsFile attribute) spin_mode (abipy.core.atom.AtomicConfiguration property) SpinDecorator (class in abipy.abio.decorators) spinors2color (abipy.electrons.fatbands.FatBandsFile attribute) spinors2tex (abipy.electrons.fatbands.FatBandsFile attribute) spins (abipy.electrons.ebands.ElectronBands property) spline() (abipy.core.atom.RadialFunction method) (abipy.core.func1d.Function1D method) spline_derivatives() (abipy.core.func1d.Function1D method) spline_int_jlqr() (in module abipy.tools.bessel) spline_integral() (abipy.core.func1d.Function1D method) spline_on_mesh() (abipy.core.func1d.Function1D method) spline_roots (abipy.core.func1d.Function1D property) split_datasets() (abipy.abio.inputs.MultiDataset method) split_dwdq() (abipy.dfpt.gruneisen.GrunsNcFile method) split_gruns() (abipy.dfpt.gruneisen.GrunsNcFile method) split_gruns_finite_differences() (abipy.dfpt.gruneisen.GrunsNcFile method) split_matched_indices (abipy.dfpt.phonons.PhononBands property) split_phdispl_cart (abipy.dfpt.phonons.PhononBands property) split_phfreqs (abipy.dfpt.phonons.PhononBands property) split_qpoints (abipy.dfpt.phonons.PhononBands property) sql_connect() (abipy.flowtk.launcher.MultiFlowScheduler method) start (abipy.abio.robots.Robot attribute) (abipy.ppcodes.oncv_parser.GrepResults attribute) start() (abipy.flowtk.launcher.MultiFlowScheduler method) (abipy.flowtk.launcher.PyFlowScheduler method) (abipy.flowtk.mocks.AbinitTaskMockedStart method) (abipy.flowtk.works.Work method) statdiff() (abipy.electrons.ebands.ElectronBands method) status (abipy.flowtk.flows.Flow property) (abipy.flowtk.nodes.Dependency property) (abipy.flowtk.nodes.FileNode property) (abipy.flowtk.nodes.Node property) (abipy.flowtk.works.Work property) Status (class in abipy.flowtk.nodes) (class in abipy.ppcodes.ppgen) status_counter (abipy.flowtk.flows.Flow property) (abipy.flowtk.works.Work property) StatusCards (class in abipy.panels.nodes) steps() (abipy.dynamics.hist.HistFile method) Stoke_shift() (abipy.lumi.deltaSCF.DeltaSCF method) stop (abipy.ppcodes.oncv_parser.GrepResults attribute) str2bool_or_none() (in module abipy.display.utils) str_deps() (abipy.flowtk.nodes.Node method) straceback() (in module abipy.flowtk.abiinspect) StrEnum (class in abipy.abio.enums) stress (abipy.ml.aseml.AseResults attribute) Stress (class in abipy.tools.tensors) stress_v_ZSISA() (abipy.dfpt.qha_general_stress.QHA_ZSISA method) stress_ZSISA_1DOF() (abipy.dfpt.qha_general_stress.QHA_ZSISA method) stress_ZSISA_2DOF() (abipy.dfpt.qha_general_stress.QHA_ZSISA method) stress_ZSISA_3DOF() (abipy.dfpt.qha_general_stress.QHA_ZSISA method) stress_ZSISA_monoclinic() (abipy.dfpt.qha_general_stress.QHA_ZSISA method) stress_ZSISA_slab_1DOF() (abipy.dfpt.qha_general_stress.QHA_ZSISA method) stress_ZSISA_slab_2DOF() (abipy.dfpt.qha_general_stress.QHA_ZSISA method) stress_ZSISA_slab_3DOF() (abipy.dfpt.qha_general_stress.QHA_ZSISA method) stress_ZSISA_triclinic() (abipy.dfpt.qha_general_stress.QHA_ZSISA method) stru_0_1_to_minus_05_05() (in module abipy.embedding.utils_ifc) structure (abipy.abio.inputs.AbinitInput property) (abipy.abio.inputs.AnaddbInput property) (abipy.core.mixins.Has_Structure property) (abipy.core.site_symmetries.SiteSymmetries property) (abipy.dfpt.anaddbnc.AnaddbNcFile attribute) (abipy.dfpt.ddb.Becs property) (abipy.dfpt.ddb.DdbFile property) (abipy.dfpt.ddb.DielectricTensorGenerator property) (abipy.dfpt.elastic.ElasticData property) (abipy.dfpt.gruneisen.GrunsNcFile property) (abipy.dfpt.ifc.InteratomicForceConstants property) (abipy.dfpt.msqdos.MsqDos property) (abipy.dfpt.phonons.PhbstFile property) (abipy.dfpt.phtk.NonAnalyticalPh property) (abipy.dfpt.vsound.SoundVelocity property) (abipy.electrons.bse.MdfReader property) (abipy.electrons.ebands.ElectronBands property) (abipy.electrons.effmass_analyzer.EffMassAnalyzer property) (abipy.electrons.eskw.EskwFile property) (abipy.electrons.fatbands.FatBandsFile property) (abipy.electrons.fold2bloch.Fold2BlochNcfile property) (abipy.electrons.gsr.GsrFile property) (abipy.electrons.gw.SigresFile property) (abipy.electrons.optic.OpticNcFile property) (abipy.electrons.scr.ScrFile property) (abipy.eph.a2f.A2fFile property) (abipy.eph.gpath.GpathFile property) (abipy.eph.gstore.Gqk property) (abipy.eph.gstore.GstoreFile property) (abipy.eph.rta.RtaFile property) (abipy.eph.sigeph.SigEPhFile property) (abipy.eph.transportfile.TransportFile property) (abipy.eph.varpeq.Polaron property) (abipy.eph.varpeq.VarpeqFile property) (abipy.ml.relax_scanner.Entry attribute) (abipy.wannier90.abiwan.AbiwanFile property) (abipy.wannier90.win.Wannier90Input property) (abipy.wannier90.wout.WoutFile property) (abipy.waves.wfkfile.WfkFile property) Structure (class in abipy.core.structure) structure() (abipy.abio.abivars.AbinitInputFile method) (abipy.dfpt.anaddbnc.AnaddbNcFile method) (abipy.dfpt.phonons.PhdosFile method) (abipy.dfpt.phonons.PhdosReader method) (abipy.electrons.bse.MdfFile method) (abipy.eph.v1sym.V1symFile method) (abipy.eph.wr.WrNcFile method) structure2wannier90() (in module abipy.wannier90.win) structure_abivars (abipy.abio.inputs.AbinitInput property) structure_dataframes() (abipy.core.restapi.DatabaseStructures method) structure_ex() (abipy.lumi.deltaSCF.DeltaSCF method) structure_from_abistruct_fmt() (in module abipy.abio.abivars) structure_from_atoms() (in module abipy.flowtk.abiphonopy) structure_from_ucell() (in module abipy.data) structure_gs() (abipy.lumi.deltaSCF.DeltaSCF method) structure_viewer (abipy.panels.core.PanelWithStructure attribute) StructurePanel (class in abipy.panels.structure) structures() (abipy.dfpt.gruneisen.GrunsNcFile method) (abipy.dynamics.hist.HistFile method) subclass_from_name() (abipy.core.kpoints.KpointList class method) submit_tasks() (abipy.flowtk.works.Work method) sum_weights() (abipy.core.kpoints.KpointList method) summarize() (abipy.electrons.effmass_analyzer.EffMassAnalyzer method) (abipy.ml.aseml.AseRelaxation method) sumrule (abipy.dfpt.ddb.Becs property) support_ext() (abipy.iotools.visualizer.Visualizer class method) supported_extensions() (abipy.iotools.visualizer.Visualizer class method) SUPPORTED_EXTS (abipy.ml.extxyz_generator.ExtxyzIOWriter attribute) SusFile (class in abipy.electrons.scr) symafm (abipy.core.symmetries.AbinitSpaceGroup property) symbol (abipy.core.atom.AtomicConfiguration property) (abipy.dynamics.analyzer.ArrheniusEntry attribute) (abipy.dynamics.analyzer.DiffusionData attribute) (abipy.dynamics.analyzer.Msdtt0 attribute) symbols() (abipy.dynamics.analyzer.ArrheniusPlotter method) symbols_by_typat (abipy.flowtk.abiobjects.LdauParams property) (abipy.flowtk.abiobjects.LexxParams property) symeq() (abipy.core.symmetries.AbinitSpaceGroup method) symlink_abiext() (abipy.flowtk.utils.Directory method) symmops() (abipy.core.symmetries.AbinitSpaceGroup method) symprec (abipy.core.skw.ElectronInterpolator attribute) symrec (abipy.core.symmetries.AbinitSpaceGroup property) symrel (abipy.core.symmetries.AbinitSpaceGroup property) sync_widgets() (abipy.panels.flows.WorkTaskSelector method)

T

tag (abipy.flowtk.abiinspect.YamlDoc attribute) task (abipy.panels.flows.WorkTaskSelector attribute) TaskManager (class in abipy.flowtk.tasks) TaskPanel (class in abipy.panels.tasks) tasks_from_nids() (abipy.flowtk.flows.Flow method) tdep_to_abinit() (in module abipy.dfpt.converters) TdepElectronBands (class in abipy.eph.sigeph) temp_shell_task() (abipy.flowtk.tasks.AbinitTask class method) (abipy.flowtk.tasks.AnaddbTask class method) temperature (abipy.dynamics.analyzer.DiffusionData attribute) (abipy.dynamics.analyzer.MdAnalyzer property) (abipy.dynamics.analyzer.Msdtt0 property) (abipy.dynamics.analyzer.SigmaBerend attribute) temporary_change_attributes() (in module abipy.tools.context_managers) temporary_flow() (abipy.flowtk.flows.Flow class method) temps (abipy.dynamics.analyzer.ArrheniusEntry attribute) tensor_at_frequency() (abipy.dfpt.ddb.DielectricTensorGenerator method) TENSOR_META (abipy.dfpt.elastic.ElasticData attribute) tests_with_fftalg() (abipy.tools.fftprof.FFTBenchmark method) text (abipy.flowtk.abiinspect.YamlDoc attribute) text_notag (abipy.flowtk.abiinspect.YamlDoc property) thermal_conductivity_slack() (abipy.dfpt.gruneisen.GrunsNcFile method) (in module abipy.dfpt.gruneisen) ThermalRelaxTask (class in abipy.flowtk.zsisa) ThermalRelaxWork (class in abipy.flowtk.zsisa) time1 (abipy.dynamics.analyzer.SigmaBerend attribute) time2 (abipy.dynamics.analyzer.SigmaBerend attribute) time2loadlever() (in module abipy.flowtk.qutils) time2pbspro() (in module abipy.flowtk.qutils) time2slurm() (in module abipy.flowtk.qutils) time_key (abipy.ml.aseml.AseMdLog attribute) timeArrScorrelated (abipy.dynamics.analyzer.DiffusionData attribute) timeit() (in module abipy.tools.decorators) timelimit_parser() (in module abipy.flowtk.qutils) timeout (abipy.flowtk.qjobs.QueueJob property) Timeout (class in abipy.tools.context_managers) Timer (class in abipy.tools.context_managers) times (abipy.dynamics.analyzer.DiffusionData attribute) (abipy.dynamics.analyzer.Msdtt0 property) timestep (abipy.dynamics.analyzer.MdAnalyzer property) tips (abipy.electrons.gw.QPState property) TIPS() (abipy.electrons.gw.QPState class method) tmesh (abipy.eph.rta.RtaFile property) (abipy.eph.sigeph.QpTempList property) (abipy.eph.sigeph.SigEPhFile property) tnons (abipy.core.symmetries.AbinitSpaceGroup property) to() (abipy.core.structure.Structure method) to_abivars() (abipy.core.structure.Structure method) (abipy.flowtk.abiobjects.LdauParams method) (abipy.flowtk.abiobjects.LexxParams method) to_array() (abipy.core.kpoints.KpointList method) to_ase_atoms() (abipy.core.structure.Structure method) (in module abipy.ml.aseml) to_bxsf() (abipy.electrons.ebands.ElectronBands method) to_chgcar() (abipy.core.fields.Density method) to_dataframe() (abipy.dfpt.gruneisen.GrunsNcFile method) to_ddb() (abipy.embedding.embedding_ifc.Embedded_phonons method) to_dict (abipy.core.atom.RadialFunction property) to_dict() (abipy.flowtk.flows.Flow method) to_file() (abipy.core.func1d.Function1D method) to_json() (abipy.abio.robots.Robot method) (abipy.core.kpoints.KpointList method) (abipy.electrons.ebands.ElectronBands method) to_pymatgen() (abipy.dfpt.phonons.PhdosFile method) (abipy.dfpt.phonons.PhononBands method) (abipy.dfpt.phonons.PhononDos method) (abipy.electrons.ebands.ElectronBands method) (abipy.electrons.ebands.ElectronDos method) to_shell_manager() (abipy.flowtk.tasks.TaskManager method) to_strdict() (abipy.electrons.gw.QPState method) to_string() (abipy.abio.abivars.AbinitInputFile method) (abipy.abio.inputs.AbinitInput method) (abipy.abio.inputs.AbstractInput method) (abipy.abio.inputs.AnaddbInput method) (abipy.abio.inputs.Cut3DInput method) (abipy.abio.inputs.MultiDataset method) (abipy.abio.inputs.OpticInput method) (abipy.abio.outputs.AbinitLogFile method) (abipy.abio.outputs.AbinitOutputFile method) (abipy.abio.robots.Robot method) (abipy.core.gsphere.GSphere method) (abipy.core.kpoints.IrredZone method) (abipy.core.kpoints.Kpath method) (abipy.core.kpoints.Kpoint method) (abipy.core.kpoints.KpointList method) (abipy.core.kpoints.Ktables method) (abipy.core.mesh3d.Mesh3D method) (abipy.core.site_symmetries.SiteSymmetries method) (abipy.core.skw.SkwInterpolator method) (abipy.core.structure.Structure method) (abipy.core.symmetries.AbinitSpaceGroup method) (abipy.dfpt.anaddbnc.AnaddbNcFile method) (abipy.dfpt.ddb.Becs method) (abipy.dfpt.ddb.DdbFile method) (abipy.dfpt.ddb.DielectricTensorGenerator method) (abipy.dfpt.elastic.ElasticData method) (abipy.dfpt.gruneisen.GrunsNcFile method) (abipy.dfpt.ifc.InteratomicForceConstants method) (abipy.dfpt.msqdos.MsqDos method) (abipy.dfpt.phonons.PhbstFile method) (abipy.dfpt.phonons.PhdosFile method) (abipy.dfpt.phonons.PhononBands method) (abipy.dfpt.phonons.PhononBandsPlotter method) (abipy.dfpt.vzsisa.Vzsisa method) (abipy.dynamics.analyzer.MdAnalyzer method) (abipy.dynamics.analyzer.Msdtt0 method) (abipy.dynamics.analyzer.Msdtt0List method) (abipy.dynamics.analyzer.MultiMdAnalyzer method) (abipy.dynamics.hist.HistFile method) (abipy.dynamics.hist.HistRobot method) (abipy.electrons.bse.DielectricFunction method) (abipy.electrons.bse.MdfFile method) (abipy.electrons.bse.MultipleMdfPlotter method) (abipy.electrons.denpot.DensityNcFile method) (abipy.electrons.ebands.ElectronBands method) (abipy.electrons.ebands.ElectronBandsPlotter method) (abipy.electrons.ebands.ElectronDos method) (abipy.electrons.effmass_analyzer.EffMassAnalyzer method) (abipy.electrons.effmass_analyzer.Segment method) (abipy.electrons.eskw.EskwFile method) (abipy.electrons.fatbands.FatBandsFile method) (abipy.electrons.fold2bloch.Fold2BlochNcfile method) (abipy.electrons.gsr.GsrFile method) (abipy.electrons.gw.SigresFile method) (abipy.electrons.lobster.CoxpFile method) (abipy.electrons.lobster.ICoxpFile method) (abipy.electrons.lobster.LobsterAnalyzer method) (abipy.electrons.lobster.LobsterDoscarFile method) (abipy.electrons.lobster.LobsterInput method) (abipy.electrons.optic.OpticNcFile method) (abipy.electrons.psps.PspsFile method) (abipy.electrons.psps.VnlProjector method) (abipy.electrons.scr.ScrFile method) (abipy.eph.a2f.A2f method) (abipy.eph.a2f.A2fFile method) (abipy.eph.cumulant.CumulantEPhFile method) (abipy.eph.gpath.GpathFile method) (abipy.eph.gstore.Gqk method) (abipy.eph.gstore.GstoreFile method) (abipy.eph.rta.RtaFile method) (abipy.eph.sigeph.EphSelfEnergy method) (abipy.eph.sigeph.QpTempList method) (abipy.eph.sigeph.QpTempState method) (abipy.eph.sigeph.SigEPhFile method) (abipy.eph.sigeph.TdepElectronBands method) (abipy.eph.transportfile.TransportFile method) (abipy.eph.v1sym.V1symFile method) (abipy.eph.varpeq.Polaron method) (abipy.eph.varpeq.VarpeqFile method) (abipy.eph.varpeq.VarpeqRobot method) (abipy.eph.wr.WrNcFile method) (abipy.flowtk.abiinspect.Relaxation method) (abipy.flowtk.abiinspect.ScfCycle method) (abipy.flowtk.nodes.NodeHistory method) (abipy.ml.aseml.AseMdLog method) (abipy.ml.aseml.AseRelaxation method) (abipy.ml.aseml.AseResults method) (abipy.ml.aseml.AseTrajectoryPlotter method) (abipy.ml.aseml.MlCompareNNs method) (abipy.ml.aseml.MlCwfEos method) (abipy.ml.aseml.MlGsList method) (abipy.ml.aseml.MlMd method) (abipy.ml.aseml.MlNeb method) (abipy.ml.aseml.MlOrderer method) (abipy.ml.aseml.MlRelaxer method) (abipy.ml.aseml.MlValidateWithAbinitio method) (abipy.ml.aseml.MultiMlNeb method) (abipy.ml.extxyz_generator.ExtxyzIOWriter method) (abipy.ml.extxyz_generator.SinglePointRunner method) (abipy.ml.ml_phonopy.MlPhonopy method) (abipy.ml.ml_phonopy.MlPhonopyWithDDB method) (abipy.ml.relax_scanner.RelaxScanner method) (abipy.ml.relax_scanner.RelaxScannerAnalyzer method) (abipy.ppcodes.oncv_parser.OncvParser method) (abipy.tools.plotting.GenericDataFilePlotter method) (abipy.tools.plotting.GenericDataFilesPlotter method) (abipy.wannier90.abiwan.AbiwanFile method) (abipy.wannier90.win.Wannier90Input method) (abipy.wannier90.wout.WoutFile method) (abipy.waves.wfkfile.WfkFile method)

to_xdatcar() (abipy.dynamics.hist.HistFile method) to_xmgrace() (abipy.dfpt.phonons.PhononBands method) (abipy.electrons.ebands.ElectronBands method) tofftmesh() (abipy.core.gsphere.GSphere method) tonumber() (in module abipy.tools.text) torange() (in module abipy.tools.duck) TorqueJob (class in abipy.flowtk.qjobs) tos() (abipy.core.kpoints.Kpoint method) tot (abipy.dfpt.raman.PowderIntensity attribute) total (abipy.electrons.lobster.CoxpFile attribute) total_dos (abipy.electrons.lobster.LobsterDoscarFile attribute) total_energy() (abipy.dfpt.ddb.DdbFile method) total_rhog() (abipy.core.fields.Density method) total_rhor() (abipy.core.fields.Density method) total_rhor_as_density() (abipy.core.fields.Density method) trace() (abipy.core.symmetries.LatticeRotation method) traj() (abipy.ml.aseml.AseRelaxation method) traj_forces_for_keys() (abipy.ml.aseml.AseResultsComparator method) TransportFile (class in abipy.eph.transportfile) transpose_last3dims() (in module abipy.tools.numtools) trim_paths() (abipy.abio.robots.Robot method) try_files() (in module abipy.tools.iotools) tsmear() (abipy.core.mixins.Has_ElectronBands method) TYPE2NAMES (abipy.dfpt.elastic.ElasticData attribute) type_of_index (abipy.electrons.lobster.CoxpFile attribute) (abipy.electrons.lobster.ICoxpFile attribute) typeidx_from_symbol() (abipy.iotools.ETSF_Reader method)

U

uf_eigens() (abipy.electrons.fold2bloch.Fold2BlochNcfile method) uf_weights() (abipy.electrons.fold2bloch.Fold2BlochNcfile method) unconverged_tasks (abipy.flowtk.flows.Flow property) unfold() (abipy.flowtk.wrappers.Fold2Bloch method) units (abipy.abio.variable.InputVariable property) (abipy.panels.ddb.PanelWithAnaddbParams attribute) unknown_status (abipy.flowtk.qjobs.QueueJob property) up_minus_down() (abipy.electrons.ebands.ElectronDos method) update_card() (abipy.panels.nodes.StatusCards method) update_collection() (abipy.flowtk.nodes.NodeResults method) update_flows_and_slqdb() (abipy.flowtk.launcher.MultiFlowScheduler method)

update_main_area() (abipy.panels.structure.InputFileGenerator method) update_work() (abipy.panels.flows.WorkTaskSelector method) url (abipy.abio.inputs.OpticVar property) use_cache (abipy.core.skw.ElectronInterpolator attribute) use_smartio() (abipy.flowtk.flows.Flow method) USER_CONFIG_DIR (abipy.flowtk.tasks.TaskManager attribute) user_message (abipy.flowtk.nodes.Node property) user_wants_to_abort() (in module abipy.tools.cli_parsers) user_wants_to_exit() (abipy.flowtk.utils.Editor static method) uses_ktimereversal (abipy.abio.inputs.AbinitInput property) uses_paral_kgb() (abipy.flowtk.tasks.AbinitTask method) utype (abipy.eph.varpeq.Entry attribute)

V

V1symFile (class in abipy.eph.v1sym) val_ib (abipy.core.skw.ElectronInterpolator property) valence_electrons_per_atom (abipy.abio.inputs.AbinitInput property) valence_electrons_per_atom() (abipy.core.structure.Structure method) validate() (abipy.abio.enums.EnumMixin class method) validate_json_schema() (abipy.flowtk.flows.Flow method) validate_output_parser() (in module abipy.abio.outputs) values (abipy.core.func1d.Function1D property) (abipy.electrons.lobster.ICoxpFile attribute) (abipy.ppcodes.oncv_parser.AtanLogDer attribute) (abipy.ppcodes.oncv_parser.ConvData attribute) variable_checksum() (abipy.abio.inputs.AbinitInput method) varname_dtindex() (abipy.abio.abivars.AbinitInputParser static method) varpeq (abipy.eph.varpeq.Polaron attribute) VarpeqFile (class in abipy.eph.varpeq) VarpeqReader (class in abipy.eph.varpeq) VarpeqRobot (class in abipy.eph.varpeq) vars (abipy.abio.inputs.AbinitInput property) (abipy.abio.inputs.AbstractInput property) (abipy.abio.inputs.AnaddbInput property) (abipy.abio.inputs.OpticInput property) (abipy.wannier90.win.Wannier90Input property) verbose (abipy.abio.abivars.AbinitInputParser attribute) (abipy.dynamics.analyzer.MdAnalyzer property) (abipy.panels.core.AbipyParameterized attribute) version (abipy.dfpt.ddb.DdbFile property) VERSION (abipy.flowtk.flows.Flow attribute) version (abipy.flowtk.tasks.AbinitBuild attribute) version_ge() (abipy.flowtk.tasks.AbinitBuild method) versor() (abipy.core.kpoints.Kpoint method) versors() (abipy.core.kpoints.Kpath method) vesta_open() (abipy.dfpt.msqdos.MsqDos method) vesta_phonon() (in module abipy.embedding.utils_ifc) vh() (abipy.electrons.denpot.VhartreeNcFile method) VhartreeNcFile (class in abipy.electrons.denpot) VhartreePotential (class in abipy.core.fields)

vhxc() (abipy.electrons.denpot.VhxcNcFile method) VhxcNcFile (class in abipy.electrons.denpot) VhxcPotential (class in abipy.core.fields) view_phononwebsite() (abipy.dfpt.ddb.DdbFile method) (abipy.dfpt.phonons.PhononBands method) visualize() (abipy.core.structure.Structure method) (abipy.dynamics.hist.HistFile method) visualize_structure_with() (abipy.core.mixins.Has_Structure method) visualize_ur2() (abipy.waves.pwwave.PWWaveFunction method) (abipy.waves.wfkfile.WfkFile method) Visualizer (class in abipy.iotools.visualizer) vk_cart_ibz (abipy.eph.gstore.Gqk attribute) vkmat_cart_ibz (abipy.eph.gstore.Gqk attribute) vks() (abipy.electrons.denpot.PotNcFile method) VksPotential (class in abipy.core.fields) VnlProjector (class in abipy.electrons.psps) vol_E2Vib1() (abipy.dfpt.vzsisa.Vzsisa method) vol_E2Vib1_forth() (abipy.dfpt.vzsisa.Vzsisa method) vol_Einf_Vib1() (abipy.dfpt.vzsisa.Vzsisa method) vol_Einf_Vib2() (abipy.dfpt.vzsisa.Vzsisa method) vol_Einf_Vib2_forth() (abipy.dfpt.vzsisa.Vzsisa method) vol_Einf_Vib4() (abipy.dfpt.vzsisa.Vzsisa method) vol_Einf_Vib4_forth() (abipy.dfpt.vzsisa.Vzsisa method) vol_EinfVib1_forth() (abipy.dfpt.vzsisa.Vzsisa method) volume (abipy.ml.aseml.AseResults property) volume_animate() (abipy.display.mvtk.MayaviFieldAnimator method) volumes (abipy.dynamics.analyzer.ArrheniusEntry attribute) volumes() (abipy.dfpt.gruneisen.GrunsNcFile method) vsound_num_points (abipy.panels.ddb.DdbFilePanel attribute) vsound_qpt_norm (abipy.panels.ddb.DdbFilePanel attribute) vtaus() (abipy.ppcodes.oncv_parser.OncvParser method) vxc() (abipy.electrons.denpot.VxcNcFile method) VxcNcFile (class in abipy.electrons.denpot) VxcPotential (class in abipy.core.fields) Vzsisa (class in abipy.dfpt.vzsisa) VzsisaFlow (class in abipy.flowtk.vzsisa) VzsisaWork (class in abipy.flowtk.vzsisa)

W

wal_sbk() (abipy.electrons.fatbands.FatBandsFile method) walm_sbk() (abipy.electrons.fatbands.FatBandsFile method) wann_centers() (abipy.wannier90.abiwan.AbiwanFile method) wann_spreads() (abipy.wannier90.abiwan.AbiwanFile method) Wannier90Input (class in abipy.wannier90.win) warning (abipy.panels.core.AbipyParameterized attribute) warning() (abipy.flowtk.nodes.NodeHistory method) warnings (abipy.ppcodes.base_parser.BaseParser attribute) (abipy.ppcodes.base_parser.BaseParser property) wdg_box() (abipy.panels.core.AbipyParameterized method) wdg_exts_with_get_panel() (abipy.panels.core.AbipyParameterized method) weight (abipy.core.kpoints.Kpoint property) weights (abipy.core.kpoints.KpointList property) (abipy.core.kpoints.Ktables attribute) WFK (abipy.abio.enums.RUNL attribute) wfk_filepath (abipy.flowtk.tasks.OpticTask property) WFK_TASK (class in abipy.abio.enums) WfkFile (class in abipy.waves.wfkfile) what_list (abipy.dynamics.hist.HistRobot property) widget2py() (in module abipy.display.utils) with_gaps (abipy.panels.core.PanelWithElectronBands attribute) with_kpoints_plot (abipy.panels.core.PanelWithElectronBands attribute) with_points_along_path() (abipy.electrons.ebands.ElectronBands method) wlabel_from_units() (in module abipy.core.abinit_units) wmesh() (abipy.dfpt.phonons.PhdosReader method) (abipy.electrons.bse.MdfReader method) (abipy.electrons.optic.OpticNcFile method) Work (class in abipy.flowtk.works) workdir (abipy.ml.relax_scanner.RelaxScannerAnalyzer property) workdir_with_prefix() (in module abipy.tools.iotools) WorkPanel (class in abipy.panels.works) works (abipy.flowtk.flows.Flow property) WorkTaskSelector (class in abipy.panels.flows) WoutFile (class in abipy.wannier90.wout) wpoints (abipy.electrons.scr.ScrFile property) wrap_to_bz() (abipy.core.kpoints.Kpoint method) (in module abipy.core.kpoints) wrap_to_ws() (abipy.core.kpoints.Kpoint method) (in module abipy.core.kpoints) write() (abipy.abio.inputs.AbstractInput method) (abipy.abio.inputs.Cut3DInput method) (abipy.abio.inputs.MultiDataset method) (abipy.abio.robots.RobotPythonScript method) (abipy.dfpt.ddb.DdbFile method) (abipy.electrons.lobster.LobsterInput method) (abipy.flowtk.utils.File method) (abipy.ml.extxyz_generator.ExtxyzIOWriter method) write_a2_bxsf() (abipy.eph.varpeq.Polaron method) write_atoms() (in module abipy.ml.aseml) write_b2_bxsf() (abipy.eph.varpeq.Polaron method) write_BORN() (in module abipy.dfpt.converters) write_chgcar() (abipy.electrons.denpot.DensityNcFile method) write_cif_file() (abipy.dfpt.msqdos.MsqDos method) write_cif_with_spglib_symms() (abipy.core.structure.Structure method) write_cube() (abipy.electrons.denpot.DensityNcFile method) write_df() (abipy.ml.aseml.MlBase method) write_fix_flow_script() (abipy.flowtk.flows.Flow method) write_jobfile() (abipy.flowtk.tasks.TaskManager method) write_json() (abipy.ml.aseml.MlBase method) write_json_in_outdir() (abipy.flowtk.nodes.Node method) write_json_in_workdir() (abipy.flowtk.nodes.Node method) write_notebook() (abipy.abio.abivars.AbinitInputFile method) (abipy.abio.outputs.AbinitLogFile method) (abipy.abio.outputs.AbinitOutputFile method) (abipy.abio.outputs.AboRobot method) (abipy.abio.timer.AbinitTimerParser method) (abipy.core.mixins.NotebookWriter method) (abipy.core.restapi.DatabaseStructures method) (abipy.core.structure.Structure method) (abipy.dfpt.anaddbnc.AnaddbNcFile method) (abipy.dfpt.anaddbnc.AnaddbNcRobot method) (abipy.dfpt.ddb.DdbFile method) (abipy.dfpt.ddb.DdbRobot method) (abipy.dfpt.gruneisen.GrunsNcFile method) (abipy.dfpt.phonons.PhbstFile method) (abipy.dfpt.phonons.PhdosFile method) (abipy.dfpt.phonons.PhononBandsPlotter method) (abipy.dfpt.phonons.PhononDosPlotter method) (abipy.dfpt.vsound.SoundVelocity method) (abipy.dynamics.hist.HistFile method) (abipy.dynamics.hist.HistRobot method) (abipy.electrons.bse.MdfFile method) (abipy.electrons.ebands.ElectronBandsPlotter method) (abipy.electrons.ebands.ElectronDosPlotter method) (abipy.electrons.eskw.EskwFile method) (abipy.electrons.fatbands.FatBandsFile method) (abipy.electrons.fold2bloch.Fold2BlochNcfile method) (abipy.electrons.gsr.GsrFile method) (abipy.electrons.gw.SigresFile method) (abipy.electrons.gw.SigresRobot method) (abipy.electrons.lobster.CoxpFile method) (abipy.electrons.lobster.ICoxpFile method) (abipy.electrons.lobster.LobsterAnalyzer method) (abipy.electrons.lobster.LobsterDoscarFile method) (abipy.electrons.optic.OpticNcFile method) (abipy.electrons.optic.OpticRobot method) (abipy.electrons.psps.PspsFile method) (abipy.electrons.psps.PspsRobot method) (abipy.electrons.scr.ScrFile method) (abipy.eph.a2f.A2fFile method) (abipy.eph.a2f.A2fRobot method) (abipy.eph.gpath.GpathFile method) (abipy.eph.gpath.GpathRobot method) (abipy.eph.gstore.GstoreRobot method) (abipy.eph.rta.RtaFile method) (abipy.eph.rta.RtaRobot method) (abipy.eph.sigeph.SigEPhFile method) (abipy.eph.sigeph.SigEPhRobot method) (abipy.eph.transportfile.TransportFile method) (abipy.eph.v1sym.V1symFile method) (abipy.eph.varpeq.VarpeqFile method) (abipy.eph.varpeq.VarpeqRobot method) (abipy.eph.wr.WrNcFile method) (abipy.ppcodes.oncv_plotter.MultiOncvPlotter method) (abipy.ppcodes.oncv_plotter.OncvPlotter method) (abipy.wannier90.abiwan.AbiwanFile method) (abipy.wannier90.abiwan.AbiwanRobot method) (abipy.wannier90.wout.WoutFile method) (abipy.waves.wfkfile.WfkFile method)

write_open_notebook() (abipy.flowtk.flows.Flow method) write_output_file_for_abinit() (abipy.ml.aseml.MlRelaxer method) write_phonopy_qha_inputs() (abipy.dfpt.qha.AbstractQHA method) write_script() (abipy.ml.aseml.MlBase method) write_tdep_lotosplitting() (in module abipy.dfpt.converters) write_traj() (abipy.ml.aseml.MlBase method) write_vib_file() (abipy.core.structure.Structure method) write_xdatcar() (abipy.dynamics.hist.HistFile method) write_xsf() (abipy.electrons.denpot.DensityNcFile method) write_xyz() (abipy.ml.extxyz_generator.SinglePointRunner method) writelines() (abipy.flowtk.utils.File method) WrNcFile (class in abipy.eph.wr) wti_from_nids() (abipy.flowtk.flows.Flow method) wvols_qibz() (abipy.dfpt.gruneisen.GrunsNcFile method)

X

xc() (abipy.electrons.gsr.GsrFile method) XcDecorator (class in abipy.abio.decorators) xsf_write_data() (in module abipy.iotools.xsf) xsf_write_structure() (in module abipy.iotools.xsf)

xsf_write_structure_and_data_to_path() (in module abipy.iotools.xsf) xy_energies_for_keys() (abipy.ml.aseml.AseResultsComparator method) xy_forces_for_keys() (abipy.ml.aseml.AseResultsComparator method) xy_stress_for_keys() (abipy.ml.aseml.AseResultsComparator method)

Y

yaml_dump() (in module abipy.tools.iotools) YAML_FILE (abipy.flowtk.tasks.TaskManager attribute) yaml_read_irred_perts() (in module abipy.flowtk.abiinspect) yaml_read_kpoints() (in module abipy.flowtk.abiinspect) yaml_safe_load() (in module abipy.tools.iotools) yaml_safe_load_path() (in module abipy.tools.iotools) yaml_tag (abipy.flowtk.events.DilatmxError attribute) (abipy.flowtk.events.NscfConvergenceWarning attribute) (abipy.flowtk.events.RelaxConvergenceWarning attribute) (abipy.flowtk.events.ScfConvergenceWarning attribute) yaml_unsafe_load() (in module abipy.tools.iotools) YamlDoc (class in abipy.flowtk.abiinspect) YamlTokenizer (class in abipy.flowtk.abiinspect) YamlTokenizerError yield_atoms() (abipy.ml.extxyz_generator.ExtxyzIOWriter method) yield_ebands_figs() (abipy.core.mixins.Has_ElectronBands method) yield_ebands_plotly_figs() (abipy.core.mixins.Has_ElectronBands method) yield_figs() (abipy.abio.abivars.AbinitInputFile method) (abipy.abio.outputs.AbinitLogFile method) (abipy.abio.outputs.AbinitOutputFile method) (abipy.abio.outputs.AboRobot method) (abipy.abio.timer.AbinitTimerParser method) (abipy.core.mixins.NotebookWriter method) (abipy.core.restapi.DatabaseStructures method) (abipy.core.structure.Structure method) (abipy.dfpt.anaddbnc.AnaddbNcFile method) (abipy.dfpt.anaddbnc.AnaddbNcRobot method) (abipy.dfpt.ddb.DdbFile method) (abipy.dfpt.ddb.DdbRobot method) (abipy.dfpt.gruneisen.GrunsNcFile method) (abipy.dfpt.phonons.PhbstFile method) (abipy.dfpt.phonons.PhdosFile method) (abipy.dfpt.phonons.PhononBandsPlotter method) (abipy.dfpt.phonons.PhononDosPlotter method) (abipy.dfpt.vsound.SoundVelocity method) (abipy.dynamics.analyzer.DiffusionDataList method) (abipy.dynamics.hist.HistFile method) (abipy.dynamics.hist.HistRobot method) (abipy.electrons.bse.MdfFile method) (abipy.electrons.ebands.ElectronBandsPlotter method) (abipy.electrons.ebands.ElectronDosPlotter method) (abipy.electrons.eskw.EskwFile method) (abipy.electrons.fatbands.FatBandsFile method) (abipy.electrons.fold2bloch.Fold2BlochNcfile method) (abipy.electrons.gsr.GsrFile method) (abipy.electrons.gw.SigresFile method) (abipy.electrons.gw.SigresRobot method) (abipy.electrons.lobster.CoxpFile method) (abipy.electrons.lobster.ICoxpFile method) (abipy.electrons.lobster.LobsterAnalyzer method) (abipy.electrons.lobster.LobsterDoscarFile method) (abipy.electrons.optic.OpticNcFile method) (abipy.electrons.optic.OpticRobot method) (abipy.electrons.psps.PspsFile method) (abipy.electrons.psps.PspsRobot method) (abipy.electrons.scr.ScrFile method) (abipy.eph.a2f.A2fFile method) (abipy.eph.a2f.A2fRobot method) (abipy.eph.gpath.GpathFile method) (abipy.eph.gpath.GpathRobot method) (abipy.eph.gstore.GstoreRobot method) (abipy.eph.rta.RtaFile method) (abipy.eph.rta.RtaRobot method) (abipy.eph.sigeph.SigEPhFile method) (abipy.eph.sigeph.SigEPhRobot method) (abipy.eph.transportfile.TransportFile method) (abipy.eph.v1sym.V1symFile method) (abipy.eph.varpeq.VarpeqFile method) (abipy.eph.varpeq.VarpeqRobot method) (abipy.eph.wr.WrNcFile method) (abipy.ml.aseml.AseMdLog method) (abipy.ppcodes.oncv_plotter.MultiOncvPlotter method) (abipy.ppcodes.oncv_plotter.OncvPlotter method) (abipy.wannier90.abiwan.AbiwanFile method) (abipy.wannier90.abiwan.AbiwanRobot method) (abipy.wannier90.wout.WoutFile method) (abipy.waves.wfkfile.WfkFile method)

yield_phbands_figs() (abipy.core.mixins.Has_PhononBands method) yield_phbands_plotly_figs() (abipy.core.mixins.Has_PhononBands method) yield_plotly_figs() (abipy.abio.outputs.AbinitOutputFile method) (abipy.dfpt.ddb.DdbFile method) (abipy.dfpt.ddb.DdbRobot method) (abipy.dfpt.phonons.PhbstFile method) (abipy.dfpt.phonons.PhdosFile method) (abipy.dfpt.phonons.PhononBandsPlotter method) (abipy.dfpt.phonons.PhononDosPlotter method) (abipy.dynamics.hist.HistFile method) (abipy.electrons.ebands.ElectronBandsPlotter method) (abipy.electrons.fatbands.FatBandsFile method) (abipy.electrons.gsr.GsrFile method) yield_structure_figs() (abipy.core.mixins.Has_Structure method) yield_structure_plotly_figs() (abipy.core.mixins.Has_Structure method)

Z

Z (abipy.ppcodes.oncv_parser.OncvParser attribute) zero_point_energy() (abipy.dfpt.phonons.PhononDos method) zeros() (abipy.core.gsphere.GSphere method) (abipy.core.mesh3d.Mesh3D method) zeta() (abipy.core.fields.Density method)

zincblende() (abipy.core.structure.Structure class method) zip_sort() (in module abipy.ml.aseml) ZsisaFlow (class in abipy.flowtk.zsisa) ZsisaWork (class in abipy.flowtk.zsisa) ZstarTensor (class in abipy.tools.tensors)