Index

A

A2f (class in abipy.eph.a2f) a2f_qcoarse (abipy.eph.a2f.A2fFile attribute) a2f_qintp (abipy.eph.a2f.A2fFile attribute) A2fFile (class in abipy.eph.a2f) A2fReader (class in abipy.eph.a2f) A2fRobot (class in abipy.eph.a2f) A2Ftr (class in abipy.eph.a2f) a2ftr_qcoarse (abipy.eph.a2f.A2fFile attribute) a2ftr_qintp (abipy.eph.a2f.A2fFile attribute) abi_extensions() (in module abipy.flowtk.utils) abi_primitive() (abipy.core.structure.Structure method) abi_sanitize() (abipy.core.structure.Structure method) abi_spacegroup() (abipy.core.structure.Structure property) abi_splitext() (in module abipy.flowtk.utils) abi_string() (abipy.core.structure.Structure property) AbiAbstractInput (class in abipy.abio.inputs) abicheck() (in module abipy.abilab) abifile_subclass_from_filename() (in module abipy.abilab) abifiles() (abipy.abio.robots.Robot property) abiget_autoparal_pconfs() (abipy.abio.inputs.AbinitInput method) abiget_ibz() (abipy.abio.inputs.AbinitInput method) abiget_irred_ddeperts() (abipy.abio.inputs.AbinitInput method) abiget_irred_dteperts() (abipy.abio.inputs.AbinitInput method) abiget_irred_phperts() (abipy.abio.inputs.AbinitInput method) abiget_irred_strainperts() (abipy.abio.inputs.AbinitInput method) abiget_spacegroup() (abipy.abio.inputs.AbinitInput method) abiget_spginfo() (abipy.core.structure.Structure method) abinb_mkstemp() (in module abipy.core.globals) abinit_build (abipy.flowtk.tasks.TaskManager attribute) abinit_help() (in module abipy.abio.abivars_db) abinit_version (abipy.core.mixins.AbinitNcFile attribute) AbinitBuild (class in abipy.flowtk.tasks) AbinitInput (class in abipy.abio.inputs) AbinitInputDecorator (class in abipy.abio.decorators) AbinitInputError AbinitInputFile (class in abipy.abio.abivars) AbinitInputParser (class in abipy.abio.abivars) AbinitLogFile (class in abipy.abio.outputs) AbinitNcFile (class in abipy.core.mixins) AbinitOutputFile (class in abipy.abio.outputs) AbinitSpaceGroup (class in abipy.core.symmetries) AbinitTask (class in abipy.flowtk.tasks) AbinitTaskMockedStart (class in abipy.flowtk.mocks) AbinitTextFile (class in abipy.abio.outputs) AbinitTimerParser (class in abipy.abio.timer) abiopen() (abipy.flowtk.nodes.FileNode method) (in module abipy.abilab) abiopen_ext2class_table() (in module abipy.abilab) abipy.abilab (module) abipy.abio (module) abipy.abio.abivars (module) abipy.abio.abivars_db (module) abipy.abio.decorators (module) abipy.abio.factories (module) abipy.abio.input_tags (module) abipy.abio.inputs (module) abipy.abio.outputs (module) abipy.abio.robots (module) abipy.abio.timer (module) abipy.abio.variable (module) abipy.core (module) abipy.core.abinit_units (module) abipy.core.fields (module) abipy.core.func1d (module) abipy.core.globals (module) abipy.core.gsphere (module) abipy.core.irrepsdb (module) abipy.core.kpoints (module) abipy.core.mesh3d (module) abipy.core.mixins (module) abipy.core.restapi (module) abipy.core.site_symmetries (module) abipy.core.skw (module) abipy.core.structure (module) abipy.core.symmetries (module) abipy.core.testing (module) abipy.data (module) abipy.dfpt (module) abipy.dfpt.anaddbnc (module) abipy.dfpt.ddb (module) abipy.dfpt.elastic (module) abipy.dfpt.frozen_phonons (module) abipy.dfpt.gruneisen (module) abipy.dfpt.ifc (module) abipy.dfpt.msqdos (module) abipy.dfpt.phonons (module) abipy.dfpt.phtk (module) abipy.dfpt.qha (module) abipy.dfpt.raman (module) abipy.dfpt.vsound (module) abipy.display (module) abipy.display.mvtk (module) abipy.display.utils (module) abipy.dynamics (module) abipy.dynamics.hist (module) abipy.electrons (module) abipy.electrons.bse (module) abipy.electrons.charges (module) abipy.electrons.denpot (module) abipy.electrons.ebands (module) abipy.electrons.effmass_analyzer (module) abipy.electrons.eskw (module) abipy.electrons.fatbands (module) abipy.electrons.fold2bloch (module) abipy.electrons.gsr (module) abipy.electrons.gw (module) abipy.electrons.lobster (module) abipy.electrons.optic (module) abipy.electrons.psps (module) abipy.electrons.scissors (module) abipy.electrons.scr (module) abipy.eph (module) abipy.eph.a2f (module) abipy.eph.common (module) abipy.eph.eph_plotter (module) abipy.eph.sigeph (module) abipy.eph.transportfile (module) abipy.eph.v1sym (module) abipy.eph.wr (module) abipy.flowtk (module) abipy.flowtk.abiinspect (module) abipy.flowtk.abiobjects (module) abipy.flowtk.abiphonopy (module) abipy.flowtk.abitimer (module) abipy.flowtk.dfpt_works (module) abipy.flowtk.effmass_works (module) abipy.flowtk.eph_flows (module) abipy.flowtk.events (module) abipy.flowtk.flows (module) abipy.flowtk.gruneisen (module) abipy.flowtk.gs_works (module) abipy.flowtk.launcher (module) abipy.flowtk.mocks (module) abipy.flowtk.netcdf (module) abipy.flowtk.nodes (module) abipy.flowtk.pseudos (module) abipy.flowtk.qadapters (module) abipy.flowtk.qha (module) abipy.flowtk.qjobs (module) abipy.flowtk.qutils (module) abipy.flowtk.tasks (module) abipy.flowtk.utils (module) abipy.flowtk.works (module) abipy.flowtk.wrappers (module) abipy.iotools (module) abipy.iotools.visualizer (module) abipy.iotools.xsf (module) abipy.panels (module) abipy.panels.core (module) abipy.panels.ddb (module) abipy.panels.flows (module) abipy.panels.gsr (module) abipy.panels.phonons (module) abipy.panels.structure (module) abipy.tools (module) abipy.tools.bessel (module) abipy.tools.decorators (module) abipy.tools.derivatives (module) abipy.tools.devtools (module) abipy.tools.duck (module) abipy.tools.fftprof (module) abipy.tools.iotools (module) abipy.tools.notebooks (module) abipy.tools.numtools (module) abipy.tools.plotting (module)

abipy.tools.tensors (module) abipy.tools.text (module) abipy.wannier90 (module) abipy.wannier90.abiwan (module) abipy.wannier90.win (module) abipy.wannier90.wout (module) abipy.waves (module) abipy.waves.pwwave (module) abipy.waves.wfkfile (module) abipy_logo1() (in module abipy.abilab) abipy_logo2() (in module abipy.abilab) abipy_logo3() (in module abipy.abilab) AbipyParameterized (class in abipy.panels.core) AbipyTest (class in abipy.core.testing) AbipyTest.SkipTest abivalidate() (abipy.abio.inputs.AbiAbstractInput method) (abipy.abio.inputs.AbinitInput method) (abipy.abio.inputs.AnaddbInput method) (abipy.abio.inputs.OpticInput method) abivalidate_flow() (abipy.core.testing.AbipyTest static method) abivalidate_input() (abipy.core.testing.AbipyTest static method) abivalidate_inputs() (abipy.flowtk.flows.Flow method) abivalidate_multi() (abipy.core.testing.AbipyTest static method) abivalidate_work() (abipy.core.testing.AbipyTest method) AbiwanFile (class in abipy.wannier90.abiwan) AbiwanReader (class in abipy.wannier90.abiwan) AbiwanRobot (class in abipy.wannier90.abiwan) ABO3() (abipy.core.structure.Structure class method) AboRobot (class in abipy.abio.outputs) abs() (abipy.core.func1d.Function1D method) AbstractInput (class in abipy.abio.inputs) AbstractQHA (class in abipy.dfpt.qha) AbstractQmeshAnalyzer (class in abipy.dfpt.qha) accepted_basis_sets (abipy.electrons.lobster.LobsterInput attribute) acoustic_debye_temp() (abipy.dfpt.gruneisen.GrunsNcFile property) acoustic_indices() (abipy.dfpt.phonons.PhononBands method) add_abiobjects() (abipy.abio.inputs.AbiAbstractInput method) add_array() (abipy.tools.plotting.ArrayPlotter method) add_arrays() (abipy.tools.plotting.ArrayPlotter method) add_comment() (abipy.flowtk.launcher.ScriptEditor method) add_deps() (abipy.flowtk.nodes.Node method) add_ebands() (abipy.electrons.ebands.ElectronBandsPlotter method) add_edos() (abipy.electrons.ebands.ElectronDosPlotter method) add_emptyline() (abipy.flowtk.launcher.ScriptEditor method) add_entry() (abipy.core.restapi.DatabaseStructures method) add_error() (abipy.flowtk.tasks.ParalHintsParser method) add_extfile_of_node() (abipy.abio.robots.Robot method) add_file() (abipy.abio.robots.Robot method) (abipy.tools.plotting.GenericDataFilesPlotter method) add_filechild() (abipy.flowtk.nodes.FileNode method) add_flow() (abipy.flowtk.launcher.PyFlowScheduler method) add_line() (abipy.flowtk.launcher.ScriptEditor method) add_lines() (abipy.flowtk.launcher.ScriptEditor method) add_mdf() (abipy.electrons.bse.MdfPlotter method) add_mdf_file() (abipy.electrons.bse.MultipleMdfPlotter method) add_periodic_replicas() (in module abipy.tools.numtools) add_phbands() (abipy.dfpt.phonons.PhononBandsPlotter method) add_phdos() (abipy.dfpt.phonons.PhononDosPlotter method) add_phonon_works_and_build() (abipy.flowtk.gruneisen.GruneisenWork method) add_phonopy_works_and_build() (abipy.flowtk.abiphonopy.PhonopyGruneisenWork method) add_plotter() (abipy.dfpt.phonons.PhononBandsPlotter method) (abipy.electrons.ebands.ElectronBandsPlotter method) add_tags() (abipy.abio.inputs.AbinitInput method) (abipy.abio.inputs.MultiDataset method) addnew_from() (abipy.abio.inputs.MultiDataset method) ae_core_density_on_mesh() (abipy.core.fields.Density class method) afm_symmops() (abipy.core.symmetries.AbinitSpaceGroup property) ALL_COMPS (abipy.dfpt.msqdos.MsqDos attribute) all_done() (abipy.flowtk.works.Work property) ALL_ELASTIC_TENSOR_NAMES (abipy.dfpt.elastic.ElasticData attribute) all_ok() (abipy.flowtk.flows.Flow property) ALL_PIEZOELECTRIC_TENSOR_NAMES (abipy.dfpt.elastic.ElasticData attribute) all_qsamps (abipy.eph.a2f.A2fRobot attribute) ALL_STATUS (abipy.flowtk.nodes.Node attribute) all_status_strings() (abipy.flowtk.nodes.Status class method) ALL_TENSOR_NAMES (abipy.dfpt.elastic.ElasticData attribute) all_visunames() (abipy.iotools.visualizer.Visualizer class method) allocate() (abipy.flowtk.flows.Flow method) (abipy.flowtk.works.Work method) allocated() (abipy.flowtk.flows.Flow property) alpha (abipy.electrons.fatbands.FatBandsFile attribute) alternate() (in module abipy.tools.numtools) amu_symbol (abipy.dfpt.gruneisen.GrunsNcFile attribute) anacompare_asr() (abipy.dfpt.ddb.DdbFile method) anacompare_becs() (abipy.dfpt.ddb.DdbRobot method) anacompare_dipdip() (abipy.dfpt.ddb.DdbFile method) anacompare_elastic() (abipy.dfpt.ddb.DdbRobot method) anacompare_eps0() (abipy.dfpt.ddb.DdbRobot method) anacompare_epsinf() (abipy.dfpt.ddb.DdbRobot method) anacompare_phdos() (abipy.dfpt.ddb.DdbFile method) anacompare_rifcsph() (abipy.dfpt.ddb.DdbFile method) AnaddbError AnaddbInput (class in abipy.abio.inputs) AnaddbInputError AnaddbNcFile (class in abipy.dfpt.anaddbnc) AnaddbNcRobot (class in abipy.dfpt.anaddbnc) AnaddbTask (class in abipy.flowtk.tasks) anaget_dielectric_tensor_generator() (abipy.dfpt.ddb.DdbFile method) anaget_elastic() (abipy.dfpt.ddb.DdbFile method) anaget_emacro_and_becs() (abipy.dfpt.ddb.DdbFile method) anaget_epsinf_and_becs() (abipy.dfpt.ddb.DdbFile method) anaget_ifc() (abipy.dfpt.ddb.DdbFile method) anaget_phbst_and_phdos_files() (abipy.dfpt.ddb.DdbFile method) anaget_phmodes_at_qpoint() (abipy.dfpt.ddb.DdbFile method) anaget_phonon_plotters() (abipy.dfpt.ddb.DdbRobot method) anaget_raman() (abipy.dfpt.ddb.DdbFile method) angle_tolerance (abipy.core.skw.ElectronInterpolator attribute) animate() (abipy.dfpt.phonons.PhononBandsPlotter method) (abipy.electrons.ebands.ElectronBandsPlotter method) any2mb() (in module abipy.flowtk.qutils) append() (abipy.abio.inputs.MultiDataset method) apply() (abipy.electrons.scissors.Scissors method) apply_getters() (abipy.flowtk.nodes.Dependency method) apply_scissors() (abipy.electrons.ebands.ElectronBands method) arange() (abipy.abio.inputs.AbinitInput method) ArrayPlotter (class in abipy.tools.plotting) as_bool() (in module abipy.flowtk.utils) as_condition() (abipy.flowtk.utils.Condition class method) as_ddb() (abipy.dfpt.ddb.DdbFile class method) as_dict() (abipy.abio.decorators.LdaUDecorator method) (abipy.abio.decorators.LexxDecorator method) (abipy.abio.decorators.SmearingDecorator method) (abipy.abio.decorators.SpinDecorator method) (abipy.abio.decorators.XcDecorator method) (abipy.abio.inputs.AbinitInput method) (abipy.abio.inputs.Cut3DInput method) (abipy.abio.inputs.OpticInput method) (abipy.core.kpoints.KpointList method) (abipy.dfpt.ddb.Becs method) (abipy.electrons.ebands.ElectronBands method) (abipy.electrons.gsr.GsrFile method) (abipy.electrons.gw.QPState method) (abipy.flowtk.events.Correction method) (abipy.flowtk.events.DilatmxErrorHandler method) (abipy.flowtk.flows.Flow method) (abipy.flowtk.nodes.HistoryRecord method) (abipy.flowtk.nodes.NodeResults method) (abipy.flowtk.tasks.ParalHints method) (abipy.flowtk.tasks.TaskManager method) as_ebands() (abipy.electrons.ebands.ElectronBands class method) as_edos() (abipy.electrons.ebands.ElectronDos class method) as_flow() (abipy.flowtk.flows.Flow class method) as_kpoint() (abipy.core.kpoints.Kpoint class method) as_kpoints() (in module abipy.core.kpoints) as_manager() (abipy.flowtk.tasks.TaskManager class method) as_node() (abipy.flowtk.nodes.Node class method) as_phbands() (abipy.dfpt.phonons.PhononBands class method) as_phdos() (abipy.dfpt.phonons.PhononDos class method) as_slice() (in module abipy.tools.duck) as_status() (abipy.flowtk.nodes.Status class method) as_structure() (abipy.core.structure.Structure class method) asctime (abipy.flowtk.nodes.HistoryRecord attribute) ask_yes_no() (in module abipy.tools.iotools) asr (abipy.panels.ddb.DdbFilePanel attribute) asr_breaking() (abipy.dfpt.phonons.PhononBands method) assert_almost_equal() (abipy.core.testing.AbipyTest static method) assert_equal() (abipy.core.testing.AbipyTest static method) assert_input_equality() (abipy.core.testing.AbipyTest static method) atoms_from_structure() (in module abipy.flowtk.abiphonopy) autodoc() (abipy.flowtk.launcher.PyFlowScheduler class method) (abipy.flowtk.tasks.TaskManager class method) autoparal_run() (abipy.flowtk.tasks.AbinitTask method) (abipy.flowtk.tasks.OpticTask method) available_advanced_options (abipy.electrons.lobster.LobsterInput attribute) average_gruneisen() (abipy.dfpt.gruneisen.GrunsNcFile method) averaged (abipy.electrons.lobster.CoxpFile attribute)

B

BaderCharges (class in abipy.electrons.charges) band_block (abipy.electrons.eskw.EskwFile attribute) bands_dict() (abipy.dfpt.phonons.PhononBandsPlotter property) bands_in (abipy.wannier90.abiwan.AbiwanFile attribute) bands_statdiff() (abipy.electrons.ebands.ElectronBandsPlotter method) bandstructure_flow() (in module abipy.flowtk.flows) BandStructureWork (class in abipy.flowtk.works) bandwidths() (abipy.electrons.ebands.ElectronBands property) base_point() (abipy.core.kpoints.KpointStar property) BaseEphReader (class in abipy.eph.common) basename (abipy.flowtk.nodes.FileNode attribute) basename() (abipy.abio.variable.InputVariable property) (abipy.flowtk.utils.Directory property) (abipy.flowtk.utils.File property) BaseRobotPanel (class in abipy.panels.core) batch() (abipy.flowtk.flows.Flow method) bcc() (abipy.core.structure.Structure class method) bec_tasks (abipy.flowtk.abiphonopy.PhonopyWork attribute) becs (abipy.dfpt.anaddbnc.AnaddbNcFile attribute), [1] Becs (class in abipy.dfpt.ddb) BecWork (class in abipy.flowtk.works)

binpath (abipy.iotools.visualizer.Visualizer attribute) BlochRegularGridInterpolator (class in abipy.tools.numtools) blocks (abipy.dfpt.ddb.DdbFile attribute) BlueGeneJob (class in abipy.flowtk.qjobs) bma() (abipy.core.func1d.Function1D property) boxed_atom() (abipy.core.structure.Structure class method) boxed_molecule() (abipy.core.structure.Structure class method) boxplot() (abipy.dfpt.phonons.PhononBands method) (abipy.dfpt.phonons.PhononBandsPlotter method) (abipy.electrons.ebands.ElectronBands method) (abipy.electrons.ebands.ElectronBandsPlotter method) braket() (abipy.waves.pwwave.PWWaveFunction method) bse_with_mdf_inputs() (in module abipy.abio.factories) BseMdfWork (class in abipy.flowtk.works) build() (abipy.electrons.scissors.ScissorsBuilder method) (abipy.flowtk.flows.Flow method) (abipy.flowtk.works.Work method) build_and_pickle_dump() (abipy.flowtk.flows.Flow method) build_flow_main_parser() (in module abipy.flowtk) bxsf_write() (in module abipy.iotools.xsf) bz (abipy.core.kpoints.Ktables attribute)

C

calc_kptbounds() (abipy.core.structure.Structure method) calc_ksampling() (abipy.core.structure.Structure method) calc_ngkpt() (abipy.core.structure.Structure method) calc_shiftk() (abipy.core.structure.Structure method) calculate_gruns_finite_differences() (in module abipy.dfpt.gruneisen) callback() (abipy.flowtk.launcher.PyFlowScheduler method) can_change_physics (abipy.flowtk.events.DilatmxErrorHandler attribute) cancel() (abipy.flowtk.flows.Flow method) (abipy.flowtk.tasks.TaskManager method) cart_bounds (abipy.core.kpoints.Kpath attribute) cart_coords (abipy.core.kpoints.Kpoint attribute) cart_forces (abipy.dfpt.ddb.DdbFile attribute) (abipy.electrons.gsr.GsrFile attribute) cart_stress_tensor (abipy.dfpt.ddb.DdbFile attribute) (abipy.electrons.gsr.GsrFile attribute) cbk_qptdm_workflow() (abipy.flowtk.flows.G0W0WithQptdmFlow method) cempty() (abipy.core.gsphere.GSphere method) (abipy.core.mesh3d.Mesh3D method) change_labels() (abipy.abio.robots.Robot method) change_task_start() (in module abipy.flowtk.mocks) check_dependencies() (abipy.flowtk.flows.Flow method) check_pid_file() (abipy.flowtk.flows.Flow method) check_site_symmetries() (abipy.core.site_symmetries.SiteSymmetries method) (abipy.dfpt.ddb.Becs method) (abipy.dfpt.msqdos.MsqDos method) check_spectator() (in module abipy.flowtk.nodes) check_status() (abipy.flowtk.flows.Flow method) (abipy.flowtk.mocks.InfiniteFlow method) (abipy.flowtk.nodes.FileNode method) (abipy.flowtk.nodes.Node method) (abipy.flowtk.works.Work method) check_weights() (abipy.core.kpoints.KpointList method) chemical_symbols (abipy.iotools.ETSF_Reader attribute) chmod() (abipy.flowtk.utils.File method) chneut (abipy.panels.ddb.DdbFilePanel attribute) chroot() (abipy.flowtk.flows.Flow method) (abipy.flowtk.works.Work method) chunks() (abipy.flowtk.works.Work method) cif_file() (in module abipy.data) class_for_ext() (abipy.abio.robots.Robot class method) class_handles_filename() (abipy.abio.robots.Robot class method) (abipy.dfpt.ddb.DdbRobot class method) clean() (abipy.flowtk.utils.Directory method) cleanup() (abipy.flowtk.launcher.PyFlowScheduler method) close() (abipy.abio.abivars.AbinitInputFile method) (abipy.abio.outputs.OutNcFile method) (abipy.abio.robots.Robot method) (abipy.dfpt.anaddbnc.AnaddbNcFile method) (abipy.dfpt.gruneisen.GrunsNcFile method) (abipy.dfpt.phonons.PhbstFile method) (abipy.dfpt.phonons.PhdosFile method) (abipy.dfpt.qha.QHA3P method) (abipy.dynamics.hist.HistFile method) (abipy.electrons.bse.MdfFile method) (abipy.electrons.eskw.EskwFile method) (abipy.electrons.fatbands.FatBandsFile method) (abipy.electrons.fold2bloch.Fold2BlochNcfile method) (abipy.electrons.gsr.GsrFile method) (abipy.electrons.gw.SigresFile method) (abipy.electrons.optic.OpticNcFile method) (abipy.electrons.psps.PspsFile method) (abipy.electrons.scr.ScrFile method) (abipy.eph.a2f.A2fFile method) (abipy.eph.sigeph.SigEPhFile method) (abipy.eph.transportfile.TransportFile method) (abipy.eph.v1sym.V1symFile method) (abipy.eph.wr.WrNcFile method) (abipy.wannier90.abiwan.AbiwanFile method) (abipy.wannier90.wout.WoutFile method) (abipy.waves.wfkfile.WfkFile method) cmdarg() (abipy.iotools.visualizer.Visualizer property) cod_search() (in module abipy.core.structure) CodStructures (class in abipy.core.restapi) color_der (abipy.electrons.psps.PspsFile attribute) color_hex (abipy.flowtk.nodes.Node attribute) color_opts() (abipy.flowtk.nodes.Status property) color_rgb (abipy.flowtk.nodes.FileNode attribute) (abipy.flowtk.nodes.Node attribute) (abipy.flowtk.tasks.AnaddbTask attribute) (abipy.flowtk.tasks.DdkTask attribute) (abipy.flowtk.tasks.EffMassTask attribute) (abipy.flowtk.tasks.ElasticTask attribute) (abipy.flowtk.tasks.EphTask attribute) (abipy.flowtk.tasks.NscfTask attribute) (abipy.flowtk.tasks.OpticTask attribute) (abipy.flowtk.tasks.PhononTask attribute) (abipy.flowtk.tasks.RelaxTask attribute) (abipy.flowtk.tasks.ScfTask attribute) (abipy.flowtk.tasks.SigmaTask attribute)

color_spin (abipy.electrons.gw.SigresFile attribute) (abipy.eph.sigeph.SigEPhFile attribute) colored() (abipy.flowtk.nodes.Status property) colormap (abipy.dfpt.qha.AbstractQmeshAnalyzer attribute) colormap_widget() (in module abipy.display.utils) colors_dropdow() (in module abipy.display.utils) combiboxplot() (abipy.dfpt.phonons.PhononBandsPlotter method) (abipy.electrons.ebands.ElectronBandsPlotter method) combiplot() (abipy.dfpt.phonons.PhononBandsPlotter method) (abipy.dfpt.phonons.PhononDosPlotter method) (abipy.dynamics.hist.HistRobot method) (abipy.electrons.ebands.ElectronBandsPlotter method) (abipy.electrons.ebands.ElectronDosPlotter method) comment() (abipy.abio.inputs.AbinitInput property) common_eph_params (abipy.eph.common.BaseEphReader attribute) compare() (abipy.electrons.psps.PspsFile method) compare_abivars() (abipy.flowtk.flows.Flow method) compare_d2de_scf_cycles() (abipy.abio.outputs.AbinitOutputFile method) compare_ebands() (abipy.flowtk.flows.Flow method) compare_gauss_edos() (abipy.electrons.ebands.ElectronBands method) compare_gs_scf_cycles() (abipy.abio.outputs.AbinitOutputFile method) compare_hist() (abipy.flowtk.flows.Flow method) compare_structures() (abipy.flowtk.flows.Flow method) compare_version() (abipy.flowtk.tasks.AbinitBuild method) compute_star() (abipy.core.kpoints.Kpoint method) computed_components_intersection (abipy.electrons.optic.OpticRobot attribute) computed_dynmat (abipy.dfpt.ddb.DdbFile attribute) Condition (class in abipy.flowtk.utils) conjugate() (abipy.core.func1d.Function1D method) connect_signals() (abipy.flowtk.flows.Flow method) connecting_vars() (abipy.flowtk.nodes.Dependency method) (abipy.flowtk.nodes.Product method) convert() (abipy.core.structure.Structure method) (abipy.panels.structure.StructurePanel method) convert_to_ieee() (abipy.dfpt.elastic.ElasticData method) convert_ucart() (abipy.dfpt.msqdos.MsqDos method) coords_dataframe() (abipy.core.restapi.DatabaseStructures property) cop_type (abipy.electrons.lobster.CoxpFile attribute) (abipy.electrons.lobster.ICoxpFile attribute) copy() (abipy.core.gsphere.GSphere method) (abipy.core.kpoints.Kpoint method) (abipy.electrons.gw.QPState method) (abipy.flowtk.tasks.ParalHints method) copy_abiext() (abipy.flowtk.utils.Directory method) copy_r() (abipy.flowtk.utils.Directory method) Correction (class in abipy.flowtk.events) corrections() (abipy.flowtk.nodes.Node property) corrections_btn (abipy.panels.flows.FlowPanel attribute) count() (abipy.core.gsphere.GSphere method) (abipy.core.kpoints.KpointList method) CoxpFile (class in abipy.electrons.lobster) cpdata2dst (abipy.flowtk.abiphonopy.PhonopyWork attribute) crandom() (abipy.core.mesh3d.Mesh3D method) create_ascii_vib() (abipy.dfpt.phonons.PhononBands method) create_phononwebsite_json() (abipy.dfpt.phonons.PhononBands method) create_tasks() (abipy.flowtk.works.QptdmWork method) create_xsf() (abipy.eph.wr.WrNcFile method) create_xyz_vib() (abipy.dfpt.phonons.PhononBands method) created (abipy.flowtk.nodes.HistoryRecord attribute) creation_date (abipy.flowtk.flows.Flow attribute) critical() (abipy.flowtk.nodes.NodeHistory method) CRITICAL_EVENTS (abipy.flowtk.tasks.NscfTask attribute) (abipy.flowtk.tasks.RelaxTask attribute) (abipy.flowtk.tasks.ScfTask attribute) (abipy.flowtk.tasks.SigmaTask attribute) Cut3DInput (class in abipy.abio.inputs) cycle_class (abipy.flowtk.tasks.AbinitTask attribute) czeros() (abipy.core.gsphere.GSphere method) (abipy.core.mesh3d.Mesh3D method)

D

data_from_cplx_mode() (in module abipy.tools.numtools) (in module abipy.tools.plotting) DatabaseStructures (class in abipy.core.restapi) dataframe (abipy.core.restapi.CodStructures attribute) (abipy.core.restapi.MpStructures attribute) (abipy.core.restapi.PhaseDiagramResults attribute) (abipy.electrons.lobster.ICoxpFile attribute) dataframe_from_ebands() (in module abipy.electrons.ebands) dataframe_from_pseudos() (in module abipy.electrons.psps) dataframes_from_structures() (in module abipy.core.structure) dataset() (abipy.abio.variable.InputVariable property) db_insert() (abipy.flowtk.flows.Flow method) dbname (abipy.core.restapi.CodStructures attribute) (abipy.core.restapi.MpStructures attribute) dchide (abipy.dfpt.anaddbnc.AnaddbNcFile attribute) dchidt (abipy.dfpt.anaddbnc.AnaddbNcFile attribute) ddb_filepath() (abipy.flowtk.tasks.AnaddbTask property) ddb_ngqpt (abipy.eph.common.BaseEphReader attribute) DdbError DdbFile (class in abipy.dfpt.ddb) DdbFile.AnaddbError DdbFilePanel (class in abipy.panels.ddb) DdbRobot (class in abipy.dfpt.ddb) ddk_filepath() (abipy.flowtk.tasks.AnaddbTask property) ddk_filepaths() (abipy.flowtk.tasks.OpticTask property) DdkTask (class in abipy.flowtk.tasks) debug() (abipy.flowtk.flows.Flow method) (abipy.flowtk.nodes.NodeHistory method) debug_btn (abipy.panels.flows.FlowPanel attribute) debye_temp() (abipy.dfpt.gruneisen.GrunsNcFile property) (abipy.dfpt.phonons.PhononDos property) declare_var() (abipy.flowtk.launcher.ScriptEditor method) declare_vars() (abipy.flowtk.launcher.ScriptEditor method) decode_with_MSON() (abipy.core.testing.AbipyTest method) decorate_ax() (abipy.dfpt.phonons.PhononBands method) (abipy.electrons.ebands.ElectronBands method) decorators() (abipy.abio.inputs.AbinitInput property) deepcopy() (abipy.abio.inputs.AbstractInput method) (abipy.abio.inputs.MultiDataset method) (abipy.electrons.ebands.ElectronBands method) (abipy.flowtk.tasks.TaskManager method) DEFAULT_EDITOR (abipy.tools.iotools.Editor attribute) degeneracies() (abipy.electrons.ebands.ElectronBands method) den_to_3d_formatted() (abipy.abio.inputs.Cut3DInput class method) den_to_3d_indexed() (abipy.abio.inputs.Cut3DInput class method) den_to_cube() (abipy.abio.inputs.Cut3DInput class method) den_to_molekel() (abipy.abio.inputs.Cut3DInput class method) den_to_tecplot() (abipy.abio.inputs.Cut3DInput class method)

den_to_xsf() (abipy.abio.inputs.Cut3DInput class method) density (abipy.electrons.denpot.DensityNcFile attribute) Density (class in abipy.core.fields) DensityNcFile (class in abipy.electrons.denpot) Dependency (class in abipy.flowtk.nodes) depends_on() (abipy.flowtk.nodes.Node method) deps() (abipy.flowtk.nodes.Node property) deps_status() (abipy.flowtk.nodes.Node property) der2() (abipy.electrons.psps.VnlProjector property) derivatives() (abipy.electrons.ebands.ElectronBands method) det (abipy.core.symmetries.LatticeRotation attribute) dfpt() (abipy.abio.inputs.AnaddbInput class method) dfpt_from_gsinput() (in module abipy.abio.factories) DielectricFunction (class in abipy.electrons.bse) (class in abipy.electrons.scr) DielectricTensor (class in abipy.tools.tensors) DielectricTensorGenerator (class in abipy.dfpt.ddb) diff_datasets() (abipy.abio.outputs.AbinitOutputFile method) difflib() (abipy.tools.devtools.HtmlDiff method) DilatmxError (class in abipy.flowtk.events) DilatmxErrorHandler (class in abipy.flowtk.events) dims_btn (abipy.panels.flows.FlowPanel attribute) dipdip (abipy.panels.ddb.DdbFilePanel attribute) dir2abifiles() (in module abipy.abilab) direct_gaps() (abipy.electrons.ebands.ElectronBands property) Directory (class in abipy.flowtk.utils) dirname() (abipy.flowtk.utils.File property) dirtree (abipy.panels.flows.FlowPanel attribute) Dirviz (class in abipy.flowtk.utils) disable_notebook() (in module abipy.core.globals) disconnect_signals() (abipy.flowtk.flows.Flow method) dispersionless_states() (abipy.electrons.ebands.ElectronBands method) displ_shape() (abipy.dfpt.phonons.PhononBands property) displace() (abipy.core.structure.Structure method) display_structure() (in module abipy.abilab) dist_gridpoints_in_spheres() (abipy.core.mesh3d.Mesh3D method) docvar() (in module abipy.abio.abivars_db) dos_idos() (abipy.electrons.ebands.ElectronDos method) dos_method (abipy.panels.ddb.DdbFilePanel attribute) doses (abipy.dfpt.gruneisen.GrunsNcFile attribute) dot() (abipy.core.structure.Structure method) Dotdict (class in abipy.core.restapi) dotget() (abipy.core.restapi.Dotdict method) ds (abipy.core.kpoints.Kpath attribute) dte_from_gsinput() (in module abipy.abio.factories) DteWork (class in abipy.flowtk.works) dx (abipy.core.func1d.Function1D attribute) dyn_mat_eigenvect (abipy.dfpt.phonons.PhononBands attribute) (abipy.dfpt.phtk.NonAnalyticalPh attribute)

E

e0max() (abipy.electrons.scissors.ScissorsBuilder property) e0min() (abipy.electrons.scissors.ScissorsBuilder property) eb_plotax_kwargs() (abipy.electrons.fatbands.FatBandsFile method) ebands (abipy.electrons.optic.OpticNcFile attribute) (abipy.electrons.scr.ScrFile attribute) (abipy.eph.a2f.A2fFile attribute) (abipy.eph.sigeph.SigEPhFile attribute) (abipy.eph.transportfile.TransportFile attribute) (abipy.wannier90.abiwan.AbiwanFile attribute) ebands() (abipy.core.mixins.Has_ElectronBands property) (abipy.electrons.effmass_analyzer.EffMassAnalyzer property) (abipy.electrons.eskw.EskwFile property) (abipy.electrons.fatbands.FatBandsFile property) (abipy.electrons.fold2bloch.Fold2BlochNcfile property) (abipy.electrons.gsr.GsrFile property) (abipy.electrons.gw.SigresFile property) (abipy.panels.gsr.GsrFilePanel property) (abipy.waves.wfkfile.WfkFile property) ebands_btn (abipy.panels.flows.FlowPanel attribute) ebands_df_checkbox (abipy.panels.core.PanelWithEbandsRobot attribute) (abipy.panels.flows.FlowPanel attribute) ebands_input() (in module abipy.abio.factories) ebands_ksamp_checkbox (abipy.panels.flows.FlowPanel attribute) ebands_list() (abipy.electrons.ebands.ElectronBandsPlotter property) ebands_plotter_btn (abipy.panels.core.PanelWithEbandsRobot attribute) (abipy.panels.flows.FlowPanel attribute) ebands_plotter_mode (abipy.panels.core.PanelWithEbandsRobot attribute) (abipy.panels.flows.FlowPanel attribute) ecut (abipy.electrons.gsr.GsrFile attribute) ecuts() (abipy.electrons.psps.VnlProjector property) edit_file() (abipy.flowtk.utils.Editor method) (abipy.tools.iotools.Editor method) edit_files() (abipy.flowtk.utils.Editor method) (abipy.tools.iotools.Editor method) Editor (class in abipy.flowtk.utils) (class in abipy.tools.iotools) EditorError edos (abipy.eph.a2f.A2fFile attribute) (abipy.eph.sigeph.SigEPhFile attribute) edos_list() (abipy.electrons.ebands.ElectronDosPlotter property) edos_method (abipy.panels.core.PanelWithElectronBands attribute) edos_plotter_btn (abipy.panels.core.PanelWithEbandsRobot attribute) edos_plotter_mode (abipy.panels.core.PanelWithEbandsRobot attribute) edos_step (abipy.panels.core.PanelWithElectronBands attribute) edos_width (abipy.panels.core.PanelWithElectronBands attribute) edoses_list() (abipy.electrons.ebands.ElectronBandsPlotter property) effective_masses() (abipy.electrons.ebands.ElectronBands method) EffMassAnalyzer (class in abipy.electrons.effmass_analyzer) EffMassAutoDFPTWork (class in abipy.flowtk.effmass_works) EffMassDFPTWork (class in abipy.flowtk.effmass_works) EffMassLineWork (class in abipy.flowtk.effmass_works) EffMassTask (class in abipy.flowtk.tasks) eigens() (abipy.electrons.ebands.ElectronBands property) einterp (abipy.electrons.eskw.EskwFile attribute) elastic_data (abipy.dfpt.anaddbnc.AnaddbNcFile attribute) ElasticData (class in abipy.dfpt.elastic) ElasticTask (class in abipy.flowtk.tasks) ElasticWork (class in abipy.flowtk.dfpt_works) ElectronBands (class in abipy.electrons.ebands) ElectronBandsPlotter (class in abipy.electrons.ebands) ElectronDos (class in abipy.electrons.ebands) ElectronDosPlotter (class in abipy.electrons.ebands) ElectronInterpolator (class in abipy.core.skw) emacro() (abipy.dfpt.anaddbnc.AnaddbNcFile property) emacro_rlx() (abipy.dfpt.anaddbnc.AnaddbNcFile property) empty() (abipy.core.gsphere.GSphere method) (abipy.core.mesh3d.Mesh3D method) empty_with_ibz() (abipy.electrons.ebands.ElectronBands class method) enable_notebook() (in module abipy.core.globals) enemax() (abipy.electrons.ebands.ElectronBands method) enemin() (abipy.electrons.ebands.ElectronBands method) energies (abipy.electrons.lobster.CoxpFile attribute) (abipy.electrons.lobster.LobsterDoscarFile attribute) energies() (abipy.dfpt.frozen_phonons.FrozenPhonon property) energy (abipy.electrons.gsr.GsrFile attribute) energy_per_atom (abipy.electrons.gsr.GsrFile attribute) energy_terms (abipy.electrons.gsr.GsrFile attribute) engine (abipy.panels.flows.FlowPanel attribute) enter_context() (abipy.tools.iotools.ExitStackWithFiles method)

ENTRIES (abipy.flowtk.tasks.TaskManager attribute) EosWork (class in abipy.flowtk.gs_works) eph_ngqpt_fine (abipy.eph.common.BaseEphReader attribute) EphPlotter (class in abipy.eph.eph_plotter) EphPotFlow (class in abipy.flowtk.eph_flows) EphSelfEnergy (class in abipy.eph.sigeph) EphTask (class in abipy.flowtk.tasks) eps0 (abipy.dfpt.anaddbnc.AnaddbNcFile attribute) epsinf (abipy.dfpt.anaddbnc.AnaddbNcFile attribute), [1] Error (abipy.abio.decorators.AbinitInputDecorator attribute) (abipy.abio.inputs.AbinitInput attribute) (abipy.abio.inputs.AnaddbInput attribute) (abipy.abio.inputs.MultiDataset attribute) (abipy.abio.inputs.OpticInput attribute) (abipy.core.kpoints.KpointList attribute) (abipy.core.restapi.MyMPRester attribute) (abipy.dfpt.ddb.DdbFile attribute) (abipy.electrons.ebands.ElectronBands attribute) (abipy.electrons.scissors.Scissors attribute) (abipy.flowtk.events.EventsParser attribute) (abipy.flowtk.flows.Flow attribute) (abipy.flowtk.launcher.PyFlowScheduler attribute) (abipy.flowtk.launcher.PyLauncher attribute) (abipy.flowtk.nodes.Node attribute) (abipy.flowtk.tasks.ParalHints attribute) (abipy.flowtk.tasks.ParalHintsParser attribute) (abipy.iotools.visualizer.Visualizer attribute) (abipy.tools.iotools.Editor attribute) errored_tasks() (abipy.flowtk.flows.Flow property) EskwFile (class in abipy.electrons.eskw) estimated_start_time() (abipy.flowtk.qjobs.PbsProJob method) (abipy.flowtk.qjobs.QueueJob method) (abipy.flowtk.qjobs.SlurmJob method) etotals (abipy.dynamics.hist.HistFile attribute) ETSF_Reader (class in abipy.iotools) eval_abinit_operators() (abipy.abio.abivars.AbinitInputParser static method) eval_line() (abipy.tools.numtools.BlochRegularGridInterpolator method) eval_points() (abipy.tools.numtools.BlochRegularGridInterpolator method) eval_sk() (abipy.core.skw.ElectronInterpolator method) (abipy.core.skw.SkwInterpolator method) (abipy.wannier90.abiwan.HWanR method) evaluate_rpn() (in module abipy.flowtk.utils) event_class (abipy.flowtk.events.DilatmxErrorHandler attribute) event_handlers() (abipy.flowtk.nodes.Node property) events() (abipy.abio.outputs.AbinitTextFile property) events_btn (abipy.panels.flows.FlowPanel attribute) EventsParser (class in abipy.flowtk.events) exc_mdf (abipy.electrons.bse.MdfFile attribute) exceptions() (abipy.abio.robots.Robot property) (abipy.flowtk.nodes.NodeResults property) exclude_nodes() (abipy.flowtk.tasks.TaskManager method) executable() (abipy.flowtk.tasks.AbinitTask property) (abipy.flowtk.tasks.AnaddbTask property) (abipy.flowtk.tasks.OpticTask property) exists() (abipy.flowtk.utils.Directory property) (abipy.flowtk.utils.File property) ExitStackWithFiles (class in abipy.tools.iotools) export() (abipy.core.structure.Structure method) export_envar() (abipy.flowtk.launcher.ScriptEditor method) export_envars() (abipy.flowtk.launcher.ScriptEditor method) export_structure() (abipy.core.mixins.Has_Structure method) export_to_cube() (abipy.core.fields.Density method) export_ur2() (abipy.waves.pwwave.PWWaveFunction method) (abipy.waves.wfkfile.WfkFile method) expose() (abipy.core.mixins.NotebookWriter method) expose_ebands() (abipy.core.mixins.Has_ElectronBands method) expose_phbands() (abipy.core.mixins.Has_PhononBands method) EXT (abipy.abio.outputs.AboRobot attribute) (abipy.dfpt.anaddbnc.AnaddbNcRobot attribute) (abipy.dfpt.ddb.DdbRobot attribute) (abipy.dynamics.hist.HistRobot attribute) (abipy.electrons.gw.SigresRobot attribute) (abipy.electrons.optic.OpticRobot attribute) (abipy.eph.a2f.A2fRobot attribute) (abipy.eph.sigeph.SigEPhRobot attribute) (abipy.wannier90.abiwan.AbiwanRobot attribute) extend() (abipy.abio.inputs.MultiDataset method) (abipy.tools.plotting.Marker method) extract_point_group() (in module abipy.core.skw)

F

FatBandsFile (class in abipy.electrons.fatbands) fcc() (abipy.core.structure.Structure class method) fermie (abipy.electrons.ebands.ElectronBands attribute) (abipy.electrons.lobster.CoxpFile attribute) fetch_tasks_to_run() (abipy.flowtk.launcher.PyLauncher method) fft() (abipy.core.func1d.Function1D method) fft_g2r() (abipy.core.mesh3d.Mesh3D method) fft_r2g() (abipy.core.mesh3d.Mesh3D method) FFTBenchmark (class in abipy.tools.fftprof) field_name (abipy.electrons.denpot.DensityNcFile attribute) (abipy.electrons.denpot.PotNcFile attribute) (abipy.electrons.denpot.VhartreeNcFile attribute) (abipy.electrons.denpot.VhxcNcFile attribute) (abipy.electrons.denpot.VxcNcFile attribute) fig_kwargs (abipy.panels.core.AbipyParameterized attribute) File (class in abipy.flowtk.utils) filechildren() (abipy.flowtk.nodes.FileNode property) filename (abipy.flowtk.nodes.HistoryRecord attribute) FileNode (class in abipy.flowtk.nodes) filepath() (abipy.flowtk.nodes.Product property) FilepathFixer (class in abipy.flowtk.utils) filesfile_string() (abipy.flowtk.tasks.AbinitTask property) (abipy.flowtk.tasks.AnaddbTask property) (abipy.flowtk.tasks.OpticTask property) filter_by_runlevel() (abipy.abio.inputs.MultiDataset method) filter_by_spgnum() (abipy.core.restapi.DatabaseStructures method) filter_by_tags() (abipy.abio.inputs.MultiDataset method) final_energy (abipy.dynamics.hist.HistFile attribute) final_pressure (abipy.dynamics.hist.HistFile attribute) final_structure (abipy.abio.outputs.AbinitOutputFile attribute) final_structure() (abipy.dynamics.hist.HistFile property) final_structures (abipy.abio.outputs.AbinitOutputFile attribute) finalize() (abipy.flowtk.effmass_works.FrohlichZPRFlow method) (abipy.flowtk.flows.Flow method) (abipy.flowtk.qha.QhaFlow method) finalized() (abipy.flowtk.nodes.Node property) find() (abipy.core.kpoints.KpointList method) find_1den_files() (abipy.flowtk.utils.Directory method) find_1wf_files() (abipy.flowtk.utils.Directory method) find_closest() (abipy.core.kpoints.KpointList method) find_convindex() (in module abipy.tools.numtools) find_deadlocks() (abipy.flowtk.flows.Flow method) find_degs_sk() (in module abipy.tools.numtools) find_kpoint_fileindex() (abipy.electrons.scr.ScrReader method) find_last_timden_file() (abipy.flowtk.utils.Directory method) find_little_group() (abipy.core.symmetries.AbinitSpaceGroup method) find_mesh_index() (abipy.core.func1d.Function1D method) find_mu() (abipy.electrons.ebands.ElectronDos method) find_optconf() (abipy.flowtk.tasks.AbinitTask method) find_parent_with_ext() (abipy.flowtk.nodes.Node method) find_points_along_path() (abipy.core.kpoints.Kpath method) (in module abipy.core.kpoints) find_qpkinds() (abipy.eph.sigeph.SigEPhFile method) findname_in_hsym_stars() (abipy.core.structure.Structure method) finite_diff() (abipy.core.func1d.Function1D method) (abipy.core.kpoints.Kpath method) (in module abipy.tools.derivatives) fit_energies() (abipy.dfpt.qha.AbstractQHA method) fit_to_frequency() (abipy.dfpt.frozen_phonons.FrozenPhonon method) fit_to_structure() (abipy.dfpt.elastic.ElasticData method) fitted_frequencies (abipy.dfpt.qha.QHA3P attribute) fix_abicritical() (abipy.flowtk.flows.Flow method) (abipy.flowtk.tasks.AbinitTask method) (abipy.flowtk.tasks.OpticTask method) fix_ofiles() (abipy.flowtk.tasks.RelaxTask method) fix_paths() (abipy.flowtk.utils.FilepathFixer method) fix_queue_critical() (abipy.flowtk.flows.Flow method) (abipy.flowtk.tasks.AbinitTask method) (abipy.flowtk.tasks.OpticTask method) Flow (class in abipy.flowtk.flows) flow() (abipy.flowtk.launcher.PyFlowScheduler property) (abipy.flowtk.works.Work property) flow_main() (in module abipy.flowtk) FlowPanel (class in abipy.panels.flows) fm_symmops() (abipy.core.symmetries.AbinitSpaceGroup property) Fold2BlochNcfile (class in abipy.electrons.fold2bloch) fontsize (abipy.dfpt.qha.AbstractQmeshAnalyzer attribute) force_stats() (abipy.electrons.gsr.GsrFile method) format_list() (abipy.abio.variable.InputVariable method) format_list2d() (abipy.abio.variable.InputVariable method) format_scalar() (abipy.abio.variable.InputVariable method) frac_bounds (abipy.core.kpoints.Kpath attribute) frac_coords() (abipy.core.kpoints.Kpoint property) (abipy.core.kpoints.KpointList property) FrohlichZPRFlow (class in abipy.flowtk.effmass_works) from_abinit_file() (abipy.wannier90.win.Wannier90Input class method) from_abistring() (abipy.core.structure.Structure class method) from_abivars() (abipy.core.structure.Structure class method) from_ase_atoms() (abipy.core.structure.Structure class method) from_chgcar_poscar() (abipy.core.fields.Density class method) from_cod_id() (abipy.core.structure.Structure class method) from_constant() (abipy.core.func1d.Function1D class method) from_cube() (abipy.core.fields.Density class method) from_cut3d_outfile() (abipy.electrons.charges.HirshfeldCharges class method) from_ddb() (abipy.dfpt.vsound.SoundVelocity class method) (abipy.eph.eph_plotter.EphPlotter class method) from_ddb_list() (abipy.dfpt.gruneisen.GrunsNcFile class method) from_den_ddb_dvdb() (abipy.flowtk.works.GKKPWork class method) from_dict() (abipy.abio.decorators.LdaUDecorator class method) (abipy.abio.decorators.LexxDecorator class method) (abipy.abio.decorators.SmearingDecorator class method) (abipy.abio.decorators.SpinDecorator class method) (abipy.abio.decorators.XcDecorator class method) (abipy.abio.inputs.AbinitInput class method) (abipy.abio.inputs.Cut3DInput class method) (abipy.abio.inputs.OpticInput class method) (abipy.core.kpoints.KpointList class method) (abipy.electrons.ebands.ElectronBands class method) (abipy.flowtk.events.Correction class method) (abipy.flowtk.events.DilatmxErrorHandler class method) (abipy.flowtk.flows.Flow class method) (abipy.flowtk.nodes.HistoryRecord class method) (abipy.flowtk.nodes.NodeResults class method) (abipy.flowtk.tasks.ParalHints class method) (abipy.flowtk.tasks.TaskManager class method)

from_dir() (abipy.abio.robots.Robot class method) (abipy.electrons.lobster.LobsterAnalyzer class method) (abipy.electrons.lobster.LobsterInput class method) from_dir_glob() (abipy.abio.robots.Robot class method) from_dirs() (abipy.abio.robots.Robot class method) from_file() (abipy.core.func1d.Function1D class method) (abipy.core.structure.Structure class method) (abipy.dfpt.anaddbnc.AnaddbNcFile class method) (abipy.dfpt.ddb.DdbFile class method) (abipy.dfpt.elastic.ElasticData class method) (abipy.dfpt.gruneisen.GrunsNcFile class method) (abipy.dfpt.ifc.InteratomicForceConstants class method) (abipy.dfpt.phonons.PhononBands class method) (abipy.dfpt.phtk.NonAnalyticalPh class method) (abipy.dfpt.raman.Raman class method) (abipy.dynamics.hist.HistFile class method) (abipy.electrons.bse.MdfFile class method) (abipy.electrons.ebands.ElectronBands class method) (abipy.electrons.effmass_analyzer.EffMassAnalyzer class method) (abipy.electrons.eskw.EskwFile class method) (abipy.electrons.fatbands.FatBandsFile class method) (abipy.electrons.gsr.GsrFile class method) (abipy.electrons.gw.SigresFile class method) (abipy.electrons.lobster.CoxpFile class method) (abipy.electrons.lobster.ICoxpFile class method) (abipy.electrons.lobster.LobsterDoscarFile class method) (abipy.electrons.optic.OpticNcFile class method) (abipy.electrons.psps.PspsFile class method) (abipy.electrons.scissors.ScissorsBuilder class method) (abipy.electrons.scr.ScrFile class method) (abipy.eph.a2f.A2fFile class method) (abipy.eph.sigeph.SigEPhFile class method) (abipy.eph.transportfile.TransportFile class method) (abipy.flowtk.flows.Flow class method) (abipy.flowtk.launcher.PyFlowScheduler class method) (abipy.flowtk.nodes.Product class method) (abipy.flowtk.tasks.TaskManager class method) (abipy.iotools.visualizer.Visualizer class method) (abipy.tools.fftprof.FFTBenchmark class method) (abipy.tools.tensors.NLOpticalSusceptibilityTensor class method) (abipy.wannier90.abiwan.AbiwanFile class method) from_files() (abipy.abio.robots.Robot class method) (abipy.dfpt.ddb.DielectricTensorGenerator class method) (abipy.dfpt.qha.QHA class method) (abipy.dfpt.qha.QHA3P class method) (abipy.dfpt.qha.QHA3PF class method) (abipy.electrons.charges.BaderCharges class method) (abipy.tools.plotting.GenericDataFilesPlotter class method) from_flow() (abipy.abio.robots.Robot class method) from_func() (abipy.core.func1d.Function1D class method) from_gs_input() (abipy.flowtk.abiphonopy.PhonopyGruneisenWork class method) (abipy.flowtk.abiphonopy.PhonopyWork class method) (abipy.flowtk.gruneisen.GruneisenWork class method) from_input() (abipy.flowtk.tasks.AbinitTask class method) from_inputs() (abipy.abio.inputs.MultiDataset class method) (abipy.flowtk.flows.Flow class method) from_kppa() (abipy.core.kpoints.IrredZone class method) from_mpi_omp_lists() (abipy.flowtk.tasks.ParalHints class method) from_mpid() (abipy.core.structure.Structure class method) (abipy.dfpt.ddb.DdbFile class method) (abipy.electrons.ebands.ElectronBands class method) from_mpid_list() (abipy.dfpt.ddb.DdbRobot class method) from_name() (abipy.iotools.visualizer.Visualizer class method) from_names() (abipy.core.kpoints.Kpath class method) from_ncreader() (abipy.core.symmetries.AbinitSpaceGroup class method) (abipy.dfpt.elastic.ElasticData class method) from_ngkpt() (abipy.core.kpoints.IrredZone class method) from_node() (abipy.flowtk.nodes.NodeResults class method) from_objects() (abipy.dfpt.ddb.DielectricTensorGenerator class method) from_phbands() (abipy.dfpt.frozen_phonons.FrozenPhonon class method) from_phbst() (abipy.dfpt.vsound.SoundVelocity class method) from_phononwfkq_work() (abipy.flowtk.works.GKKPWork class method) from_pymatgen() (abipy.electrons.ebands.ElectronBands class method) from_qtype_and_id() (abipy.flowtk.qjobs.QueueJob static method) from_scf_input() (abipy.flowtk.dfpt_works.ElasticWork class method) (abipy.flowtk.effmass_works.EffMassAutoDFPTWork class method) (abipy.flowtk.effmass_works.EffMassDFPTWork class method) (abipy.flowtk.effmass_works.EffMassLineWork class method) (abipy.flowtk.effmass_works.FrohlichZPRFlow class method) (abipy.flowtk.eph_flows.EphPotFlow class method) (abipy.flowtk.eph_flows.GkqPathFlow class method) (abipy.flowtk.gs_works.EosWork class method) (abipy.flowtk.qha.QhaFlow class method) (abipy.flowtk.qha.RelaxAndPhononWork class method) (abipy.flowtk.works.PhononWork class method) from_scf_task() (abipy.flowtk.dfpt_works.NscfDdksWork class method) (abipy.flowtk.works.BecWork class method) (abipy.flowtk.works.DteWork class method) (abipy.flowtk.works.PhononWfkqWork class method) (abipy.flowtk.works.PhononWork class method) from_string() (abipy.abio.abivars.AbinitInputFile class method) (abipy.dfpt.ddb.DdbFile class method) (abipy.flowtk.launcher.PyFlowScheduler class method) (abipy.flowtk.nodes.Status class method) (abipy.flowtk.qjobs.JobStatus class method) (abipy.flowtk.tasks.TaskManager class method) from_structure() (abipy.core.symmetries.AbinitSpaceGroup class method) from_user_config() (abipy.flowtk.launcher.PyFlowScheduler class method) (abipy.flowtk.tasks.TaskManager class method) from_vertices_and_names() (abipy.core.kpoints.Kpath class method) from_wfkpath() (abipy.electrons.fold2bloch.Fold2BlochNcfile class method) fromfftmesh() (abipy.core.gsphere.GSphere method) frozen_2phonon() (abipy.core.structure.Structure method) frozen_phonon() (abipy.core.structure.Structure method) FrozenPhonon (class in abipy.dfpt.frozen_phonons) fs_viewer (abipy.panels.core.PanelWithElectronBands attribute) func_name (abipy.flowtk.nodes.HistoryRecord attribute) Function1D (class in abipy.core.func1d) functions_pair (abipy.electrons.lobster.CoxpFile attribute) functions_pair_lorbitals (abipy.electrons.lobster.CoxpFile attribute) functions_pair_morbitals (abipy.electrons.lobster.CoxpFile attribute) fundamental_gaps() (abipy.electrons.ebands.ElectronBands property)

G

g0w0_convergence_inputs() (in module abipy.abio.factories) g0w0_flow() (in module abipy.flowtk.flows) g0w0_with_ppmodel_inputs() (in module abipy.abio.factories) G0W0WithQptdmFlow (class in abipy.flowtk.flows) G0W0Work (class in abipy.flowtk.works) gamma() (abipy.core.kpoints.Kpoint class method) gamma_ev (abipy.panels.ddb.DdbFilePanel attribute) GarbageCollector (class in abipy.flowtk.nodes) gaussian() (in module abipy.tools.numtools) gaussians_dos() (in module abipy.electrons.fatbands) gc() (abipy.flowtk.nodes.Node property) gen_id() (in module abipy.panels.core) generate() (abipy.abio.inputs.AbstractInput method) GenericDataFilePlotter (class in abipy.tools.plotting) GenericDataFilesPlotter (class in abipy.tools.plotting) get_a2f_qsamp() (abipy.eph.a2f.A2fFile method) get_a2ftr_qsamp() (abipy.eph.a2f.A2fFile method) get_abinb_workdir() (in module abipy.core.globals) get_abinit_variables() (in module abipy.abio.abivars_db) get_abistructure_from_abiref() (abipy.core.testing.AbipyTest static method) get_acoustic_debye_temp() (abipy.dfpt.phonons.PhononDos method) get_all_d2de_scf_cycles() (abipy.abio.outputs.AbinitOutputFile method) get_all_gs_scf_cycles() (abipy.abio.outputs.AbinitOutputFile method) get_all_kindices() (abipy.core.kpoints.KpointList method) get_all_status() (abipy.flowtk.works.Work method) get_allvars() (abipy.abio.outputs.OutNcFile method) get_anaddb_variables() (in module abipy.abio.abivars_db) get_available() (abipy.iotools.visualizer.Visualizer class method) get_ax3d_fig_plt() (in module abipy.tools.plotting) get_ax_fig_plt() (in module abipy.tools.plotting) get_baserobot_code_cells() (abipy.abio.robots.Robot method) get_block_for_qpoint() (abipy.dfpt.ddb.DdbFile method) get_cart_coords() (abipy.core.kpoints.KpointList method) get_chemview() (abipy.core.structure.Structure method) get_chi2_latex_label() (abipy.electrons.optic.OpticNcFile method) get_children() (abipy.flowtk.nodes.Node method) get_cif_string() (abipy.dfpt.msqdos.MsqDos method) get_cluster_graph() (abipy.flowtk.utils.Dirviz method) get_coarse() (abipy.dfpt.ddb.DdbFile method) get_collection() (abipy.flowtk.tasks.TaskManager method) get_collinear_mag() (abipy.electrons.ebands.ElectronBands method) get_computed_entry() (abipy.electrons.gsr.GsrFile method) get_conventional_standard_structure() (abipy.core.structure.Structure method) get_coords_dataframe() (abipy.abio.robots.Robot method) get_crystaltk_view() (abipy.core.structure.Structure method) get_cv() (abipy.dfpt.phonons.PhononDos method) (in module abipy.dfpt.qha) get_dataframe() (abipy.abio.outputs.AboRobot method) (abipy.dfpt.anaddbnc.AnaddbNcRobot method) (abipy.dfpt.msqdos.MsqDos method) (abipy.dfpt.phonons.PhononBands method) (abipy.dfpt.vsound.SoundVelocity method) (abipy.dynamics.hist.HistRobot method) (abipy.electrons.ebands.ElectronBands method) (abipy.electrons.gw.SigresFile method) (abipy.electrons.gw.SigresRobot method) (abipy.eph.a2f.A2fRobot method) (abipy.eph.sigeph.QpTempState method) (abipy.eph.sigeph.SigEPhFile method) (abipy.eph.sigeph.SigEPhRobot method) (abipy.wannier90.abiwan.AbiwanRobot method) get_dataframe_at_qpoint() (abipy.dfpt.ddb.DdbRobot method) get_dataframe_sk() (abipy.electrons.gw.SigresFile method) (abipy.eph.sigeph.SigEPhFile method) (abipy.eph.sigeph.SigEPhRobot method) get_dataframe_with_accuracies() (abipy.electrons.effmass_analyzer.Segment method) get_default() (abipy.abio.inputs.OpticInput method) get_delta_etime() (abipy.flowtk.launcher.PyFlowScheduler method) get_dict4pandas() (abipy.core.structure.Structure method) (abipy.dfpt.phonons.PhononBands method) (abipy.electrons.ebands.ElectronBands method) get_dict_for_mongodb_queries() (abipy.flowtk.flows.Flow method) get_dims_dataframe() (abipy.abio.outputs.AboRobot method) (abipy.flowtk.flows.Flow method) get_dims_spginfo_dataframe() (abipy.abio.outputs.AbinitOutputFile method) get_dims_spginfo_dataset() (abipy.abio.outputs.AbinitOutputFile method) get_dos_integrator() (abipy.electrons.fatbands.FatBandsFile method) get_dyn_mat_eigenvec() (in module abipy.dfpt.phtk) get_e0() (abipy.electrons.ebands.ElectronBands method) (abipy.electrons.ebands.ElectronDos method) get_e0mesh() (abipy.eph.sigeph.QpTempList method) get_ebands3d() (abipy.electrons.ebands.ElectronBands method) get_ebands_frame() (abipy.electrons.ebands.ElectronBandsPlotter method) get_ebands_params() (abipy.core.mixins.Has_ElectronBands method) get_ebands_plotter() (abipy.eph.sigeph.TdepElectronBands method) get_ebands_plotter_widgets() (abipy.panels.core.PanelWithEbandsRobot method) get_edos() (abipy.core.mixins.Has_ElectronBands method) (abipy.core.skw.ElectronInterpolator method) (abipy.electrons.ebands.ElectronBands method) get_edos_plotter() (abipy.eph.sigeph.TdepElectronBands method) get_edos_plotter_widgets() (abipy.panels.core.PanelWithEbandsRobot method) get_effmass_line() (abipy.electrons.ebands.ElectronBands method) get_ejdos() (abipy.electrons.ebands.ElectronBands method) get_elastic_dataframe() (abipy.dfpt.anaddbnc.AnaddbNcRobot method) get_elastic_properties_dataframe() (abipy.dfpt.elastic.ElasticData method) get_elastic_tensor_dataframe() (abipy.dfpt.elastic.ElasticData method) get_elastic_voigt_dataframe() (abipy.dfpt.elastic.ElasticData method) get_entropy() (abipy.dfpt.phonons.PhononDos method) (in module abipy.dfpt.qha) get_epsinf() (abipy.panels.ddb.DdbFilePanel method) get_epsinf_btn (abipy.panels.ddb.DdbFilePanel attribute) get_event_handler_classes() (in module abipy.flowtk.events) get_fd_emass_d2() (abipy.electrons.effmass_analyzer.Segment method) get_field_itemp() (abipy.eph.sigeph.QpTempList method) get_fields() (abipy.electrons.gw.QPState class method) (abipy.eph.sigeph.QpTempState class method) get_fields_for_plot() (abipy.electrons.gw.QPState class method) (abipy.eph.sigeph.QpTempState class method) get_fig_mlab() (in module abipy.display.mvtk) get_filepaths_and_exts() (abipy.flowtk.nodes.Dependency method) get_final_structure() (abipy.flowtk.tasks.RelaxTask method) get_free_energy() (abipy.dfpt.phonons.PhononDos method) (in module abipy.dfpt.qha) get_frozen_phonons() (abipy.dfpt.phonons.PhononBands method) get_fstats_dict() (abipy.dynamics.hist.HistFile method) get_gaps_dataframe() (abipy.eph.sigeph.SigEPhFile method) get_gaps_string() (abipy.electrons.ebands.ElectronBands method) get_graphviz() (abipy.flowtk.flows.Flow method) get_graphviz_dirtree() (abipy.flowtk.nodes.Node method) get_gsinput_alas_ngkpt() (abipy.core.testing.AbipyTest static method) get_gsinput_si() (abipy.core.testing.AbipyTest static method) get_ifc_cartesian() (abipy.dfpt.ifc.InteratomicForceConstants method) get_ifc_local() (abipy.dfpt.ifc.InteratomicForceConstants method) get_info() (abipy.flowtk.qjobs.PbsProJob method) (abipy.flowtk.qjobs.QueueJob method) (abipy.flowtk.qjobs.SlurmJob method) get_internal_energy() (abipy.dfpt.phonons.PhononDos method) get_interpolated_ebands_plotter() (abipy.wannier90.abiwan.AbiwanRobot method) get_interpolator() (abipy.waves.pwwave.PWWaveFunction method) get_jsmol_view() (abipy.core.structure.Structure method) get_json_doc() (abipy.dfpt.msqdos.MsqDos method) get_k2kqg_map() (abipy.core.kpoints.KpointList method) get_kcoords_from_names() (abipy.core.structure.Structure method) get_kpath() (abipy.panels.structure.StructurePanel method) get_kpath_input_string() (abipy.core.structure.Structure method) get_kpoints_and_band_range_for_edges() (abipy.electrons.ebands.ElectronBands method) get_label_files_str() (abipy.abio.robots.Robot method) get_labelstyle_from_spin_pair() (abipy.electrons.lobster.CoxpFile method) get_labelstyle_from_spin_pair_orbs() (abipy.electrons.lobster.CoxpFile method) get_lattice_dataframe() (abipy.abio.robots.Robot method) get_lifetimes_boltztrap() (abipy.eph.sigeph.SigEPhFile method) get_linewidth_dos() (abipy.eph.sigeph.SigEPhFile method) get_linopt_latex_label() (abipy.electrons.optic.OpticNcFile static method) get_lnlist_for_type() (abipy.electrons.psps.PspsReader method) get_longitudinal_fraction() (abipy.dfpt.phonons.PhononBands method) get_lorentz_intensity() (abipy.dfpt.raman.Raman method) get_marker() (abipy.electrons.gw.SigresFile method) get_maxfreq_mode() (abipy.dfpt.phonons.PhononBands method) get_mcmillan_tc() (abipy.eph.a2f.A2f method) get_mdf() (abipy.electrons.bse.MdfFile method) get_mdf_robot() (abipy.flowtk.works.BseMdfWork method) get_message() (abipy.flowtk.nodes.HistoryRecord method) get_minfreq_mode() (abipy.dfpt.phonons.PhononBands method) get_mobility_mu() (abipy.eph.transportfile.TransportFile method) get_mock_module() (abipy.core.testing.AbipyTest static method) get_modes_intensities() (abipy.dfpt.raman.Raman method) get_moment() (abipy.eph.a2f.A2f method) get_moment_nu() (abipy.eph.a2f.A2f method) get_mongo_info() (abipy.flowtk.flows.Flow method) get_mprester() (in module abipy.core.restapi)

get_msq_tmesh() (abipy.dfpt.msqdos.MsqDos method) get_mustar_from_tc() (abipy.eph.a2f.A2f method) get_nbformat_nbv() (abipy.core.mixins.NotebookWriter static method) get_nbformat_nbv_nb() (abipy.core.mixins.NotebookWriter method) get_nelect() (abipy.core.fields.Density method) get_newnode_id() (in module abipy.flowtk.nodes) get_ngkpt_shiftk() (abipy.abio.inputs.AbinitInput method) get_ngl_view() (abipy.core.structure.Structure method) get_njobs_in_queue() (abipy.flowtk.flows.Flow method) (abipy.flowtk.tasks.TaskManager method) get_nodes() (abipy.flowtk.qjobs.QueueJob method) get_ordered_with_policy() (abipy.flowtk.tasks.ParalHints method) get_oscillator_dataframe() (abipy.dfpt.ddb.DielectricTensorGenerator method) get_oxi_state_decorated() (abipy.core.structure.Structure method) get_panel() (abipy.abio.outputs.AbinitOutputFile method) (abipy.core.structure.Structure method) (abipy.dfpt.ddb.DdbFile method) (abipy.dfpt.phonons.PhononBandsPlotter method) (abipy.dynamics.hist.HistFile method) (abipy.electrons.fatbands.FatBandsFile method) (abipy.electrons.gsr.GsrFile method) (abipy.flowtk.flows.Flow method) (abipy.panels.ddb.DdbFilePanel method) (abipy.panels.flows.FlowPanel method) (abipy.panels.gsr.GsrFilePanel method) (abipy.panels.gsr.GsrRobotPanel method) (abipy.panels.phonons.PhononBandsPlotterPanel method) (abipy.panels.structure.StructurePanel method) get_params_dataframe() (abipy.abio.robots.Robot method) get_parents() (abipy.flowtk.nodes.Node method) get_phasediagram_results() (abipy.core.restapi.MyMPRester method) get_phbands_frame() (abipy.dfpt.phonons.PhononBandsPlotter method) get_phbands_params() (abipy.core.mixins.Has_PhononBands method) get_phdos() (abipy.dfpt.phonons.PhononBands method) get_phframe() (abipy.dfpt.phonons.PhbstFile method) get_phmode() (abipy.dfpt.phonons.PhbstFile method) get_phonopy_qha() (abipy.dfpt.qha.AbstractQHA method) get_piezo_voigt_dataframe() (abipy.dfpt.elastic.ElasticData method) get_piezoelectric_tensor_dataframe() (abipy.dfpt.elastic.ElasticData method) get_plot_ebands_widgets() (abipy.panels.core.PanelWithElectronBands method) get_plot_edos_widgets() (abipy.panels.core.PanelWithElectronBands method) get_plot_fermi_surface_widgets() (abipy.panels.core.PanelWithElectronBands method) get_plot_ifc() (abipy.dfpt.ifc.InteratomicForceConstants method) get_plotter() (abipy.dfpt.gruneisen.GrunsNcFile method) get_plotter_from_ebands() (abipy.wannier90.abiwan.AbiwanFile method) get_points_from_ebands() (abipy.electrons.gw.SigresFile method) get_powder_intensity() (abipy.dfpt.raman.Raman method) get_powder_lorentz_intensity() (abipy.dfpt.raman.Raman method) get_qp_array() (abipy.eph.sigeph.SigEPhFile method) get_qpcorr() (abipy.electrons.gw.SigresFile method) get_qpgap() (abipy.electrons.gw.SigresFile method) get_qpgaps_dataframe() (abipy.electrons.gw.SigresRobot method) get_qplist() (abipy.electrons.gw.SigresFile method) get_relaxation_analyzer() (abipy.dynamics.hist.HistFile method) get_results() (abipy.flowtk.flows.Flow method) (abipy.flowtk.nodes.FileNode method) (abipy.flowtk.tasks.AnaddbTask method) (abipy.flowtk.tasks.DdkTask method) (abipy.flowtk.tasks.NscfTask method) (abipy.flowtk.tasks.OpticTask method) (abipy.flowtk.tasks.PhononTask method) (abipy.flowtk.tasks.RelaxTask method) (abipy.flowtk.tasks.ScfTask method) (abipy.flowtk.tasks.SigmaTask method) get_sampling() (abipy.core.skw.ElectronInterpolator method) get_scissors_builder() (abipy.flowtk.tasks.SigmaTask method) get_script_str() (abipy.flowtk.launcher.ScriptEditor method) get_sigeph_skb() (abipy.eph.sigeph.SigEPhFile method) get_sigma_skb_kpoint() (abipy.eph.sigeph.SigmaPhReader method) get_smallest_supercell() (abipy.core.structure.Structure method) get_sorted_structure_z() (abipy.core.structure.Structure method) get_spectral_functions() (abipy.electrons.fold2bloch.Fold2BlochNcfile method) get_spilling() (abipy.electrons.fatbands.FatBandsFile method) get_stark() (abipy.core.skw.SkwInterpolator method) get_stark_dk1() (abipy.core.skw.SkwInterpolator method) get_stark_dk2() (abipy.core.skw.SkwInterpolator method) get_stat() (abipy.flowtk.utils.File method) get_stats() (abipy.flowtk.qjobs.QueueJob method) (abipy.flowtk.qjobs.SlurmJob method) get_string() (abipy.dfpt.ddb.DdbFile method) get_structure_dataframes() (abipy.abio.robots.Robot method) get_supported_extensions() (abipy.abio.robots.Robot class method) get_symbol2coords() (abipy.core.structure.Structure method) get_symbol2indices() (abipy.core.structure.Structure method) get_t_for_vols() (abipy.dfpt.qha.AbstractQHA method) get_task_scfcycles() (abipy.flowtk.flows.Flow method) get_tensor() (abipy.dfpt.elastic.ElasticData method) (abipy.electrons.bse.MdfFile method) get_tensor_rank2_dataframe() (abipy.core.site_symmetries.SiteSymmetries method) get_thermal_expansion_coeff() (abipy.dfpt.qha.AbstractQHA method) get_thermodynamic_properties() (abipy.dfpt.qha.AbstractQHA method) (abipy.dfpt.qha.QHA method) (abipy.dfpt.qha.QHA3P method) (abipy.dfpt.qha.QHA3PF method) get_time_dataframe() (abipy.abio.outputs.AboRobot method) get_timer() (abipy.abio.outputs.AbinitTextFile method) get_tmpname() (abipy.core.testing.AbipyTest static method) get_trans_vect() (abipy.core.structure.Structure method) get_unstable_modes() (abipy.dfpt.phonons.PhononBands method) get_value() (abipy.abio.variable.InputVariable method) get_vars_dataframe() (abipy.abio.inputs.MultiDataset method) (abipy.flowtk.nodes.Node method) get_vib_free_energies() (abipy.dfpt.qha.AbstractQHA method) (abipy.dfpt.qha.QHA method) (abipy.dfpt.qha.QHA3P method) (abipy.dfpt.qha.QHA3PF method) get_voigt_dataframe() (abipy.dfpt.ddb.Becs method) (abipy.dfpt.elastic.ElasticData method) (abipy.dfpt.elastic.MyElasticTensor method) (abipy.dfpt.elastic.MyPiezoTensor method) get_vol_at_t() (abipy.dfpt.qha.AbstractQHA method) get_w_symbol() (abipy.electrons.fatbands.FatBandsFile method) get_wave() (abipy.waves.wfkfile.WfkFile method) get_wl_atom() (abipy.electrons.fatbands.FatBandsFile method) get_wl_symbol() (abipy.electrons.fatbands.FatBandsFile method) get_wyckoff_dataframe() (abipy.core.site_symmetries.SiteSymmetries method) get_zero_point_energy() (in module abipy.dfpt.qha) getattrd() (in module abipy.tools.duck) getnwrite_eosdata() (abipy.flowtk.gs_works.EosWork method) getsize() (abipy.flowtk.utils.File method) gkk_filepath() (abipy.flowtk.tasks.AnaddbTask property) GKKPWork (class in abipy.flowtk.works) GkqPathFlow (class in abipy.flowtk.eph_flows) glr_frohlich() (in module abipy.eph.common) gmods (abipy.core.mesh3d.Mesh3D attribute) graphviz_btn (abipy.panels.flows.FlowPanel attribute) graphviz_imshow() (abipy.flowtk.flows.Flow method) grid (abipy.core.kpoints.Ktables attribute) gridfs_files() (abipy.flowtk.nodes.NodeResults property) GridFsFile (class in abipy.flowtk.nodes) gridplot() (abipy.dfpt.phonons.PhononBandsPlotter method) (abipy.dfpt.phonons.PhononDosPlotter method) (abipy.dynamics.hist.HistRobot method) (abipy.electrons.ebands.ElectronBandsPlotter method) (abipy.electrons.ebands.ElectronDosPlotter method) gridplot_a2f() (abipy.eph.a2f.A2fRobot method) gridplot_with_hue() (abipy.dfpt.phonons.PhononBandsPlotter method) group_and_sortby() (abipy.abio.robots.Robot method) groupby_status() (abipy.flowtk.flows.Flow method) groupby_task_class() (abipy.flowtk.flows.Flow method) grouper() (in module abipy.tools.numtools) grun_vals_finite_differences (abipy.dfpt.gruneisen.GrunsNcFile attribute) GruneisenWork (class in abipy.flowtk.gruneisen) GrunsNcFile (class in abipy.dfpt.gruneisen) GrunsReader (class in abipy.dfpt.gruneisen) gs_input() (in module abipy.abio.factories) gs_input_btn (abipy.panels.structure.StructurePanel attribute) gs_type (abipy.panels.structure.StructurePanel attribute) GSphere (class in abipy.core.gsphere) gspheres() (abipy.waves.wfkfile.WfkFile property) gsr_dataframe_btn (abipy.panels.gsr.GsrRobotPanel attribute) GsrFile (class in abipy.electrons.gsr) GsrFilePanel (class in abipy.panels.gsr) GsrRobotPanel (class in abipy.panels.gsr) guessed_ngqpt (abipy.dfpt.ddb.DdbFile attribute) gvals_qibz (abipy.dfpt.gruneisen.GrunsNcFile attribute) gvals_qibz_finite_differences (abipy.dfpt.gruneisen.GrunsNcFile attribute) gvecs (abipy.core.mesh3d.Mesh3D attribute) gvecs() (abipy.core.gsphere.GSphere property) gwnlf_mdf (abipy.electrons.bse.MdfFile attribute)

H

h (abipy.core.func1d.Function1D attribute) handle_input_event() (abipy.flowtk.events.DilatmxErrorHandler method) handle_task_event() (abipy.flowtk.events.DilatmxErrorHandler method) handlers_btn (abipy.panels.flows.FlowPanel attribute) has_a2ftr (abipy.eph.a2f.A2fFile attribute) has_abi_spacegroup() (abipy.core.structure.Structure property) has_abiext() (abipy.flowtk.utils.Directory method) has_abinit() (abipy.core.testing.AbipyTest static method) has_ase() (abipy.core.testing.AbipyTest static method) has_at_least_one_atomic_perturbation (abipy.dfpt.ddb.DdbFile attribute) has_bec_terms (abipy.dfpt.ddb.DdbFile attribute) has_bzmesh (abipy.electrons.ebands.ElectronBands attribute) has_bzpath (abipy.electrons.ebands.ElectronBands attribute) has_chrooted() (abipy.flowtk.flows.Flow property) has_db() (abipy.flowtk.flows.Flow property) (abipy.flowtk.tasks.TaskManager property) has_different_structures() (abipy.abio.robots.Robot method) has_direction() (abipy.dfpt.phtk.NonAnalyticalPh method) has_elastic_data (abipy.dfpt.anaddbnc.AnaddbNcFile attribute) has_elastic_data() (abipy.dfpt.anaddbnc.AnaddbNcRobot property) Has_ElectronBands (class in abipy.core.mixins) has_eliashberg_function (abipy.eph.sigeph.SigEPhFile attribute) has_emacro_terms() (abipy.dfpt.ddb.DdbFile method) has_epsinf_terms (abipy.dfpt.ddb.DdbFile attribute) has_graphviz() (abipy.core.testing.AbipyTest method) Has_Header (class in abipy.core.mixins) has_internalstrain_terms (abipy.dfpt.ddb.DdbFile attribute) has_ipywidgets() (abipy.core.testing.AbipyTest static method) has_kmesh (abipy.eph.sigeph.TdepElectronBands attribute) has_kpath (abipy.eph.sigeph.TdepElectronBands attribute) has_leo (abipy.electrons.optic.OpticNcFile attribute) has_libxc (abipy.flowtk.tasks.AbinitBuild attribute) has_linewidths() (abipy.dfpt.phonons.PhononBands property) (abipy.electrons.ebands.ElectronBands property) has_linopt (abipy.electrons.optic.OpticNcFile attribute) has_lo_to_data() (abipy.dfpt.ddb.DdbFile method) has_matplotlib() (abipy.core.testing.AbipyTest static method) has_mayavi() (abipy.core.testing.AbipyTest static method) has_metallic_scheme() (abipy.electrons.ebands.ElectronBands property) has_mpi (abipy.flowtk.tasks.AbinitBuild attribute) has_mpiio (abipy.flowtk.tasks.AbinitBuild attribute) has_multi_structures (abipy.abio.abivars.AbinitInputFile attribute) has_nbformat() (abipy.core.testing.AbipyTest static method) has_netcdf (abipy.flowtk.tasks.AbinitBuild attribute) has_networkx() (abipy.core.testing.AbipyTest method) has_node_failures() (abipy.flowtk.qjobs.QueueJob property)

has_omp (abipy.flowtk.tasks.AbinitBuild attribute) has_omp() (abipy.flowtk.tasks.TaskManager property) has_panel() (abipy.core.testing.AbipyTest method) Has_PhononBands (class in abipy.core.mixins) has_piezoelectric_data (abipy.dfpt.anaddbnc.AnaddbNcFile attribute) has_piezoelectric_terms (abipy.dfpt.ddb.DdbFile attribute) has_python_graphviz() (abipy.core.testing.AbipyTest static method) has_qpoint() (abipy.dfpt.ddb.DdbFile method) has_queue() (abipy.flowtk.tasks.TaskManager property) has_same_final_structures() (abipy.abio.outputs.AbinitOutputFile property) has_same_formula() (abipy.dfpt.phonons.PhononBandsPlotter method) has_same_initial_structures() (abipy.abio.outputs.AbinitOutputFile property) has_same_mesh() (abipy.core.func1d.Function1D method) has_same_structures() (abipy.abio.inputs.MultiDataset property) has_scheduler() (abipy.flowtk.flows.Flow property) has_seaborn() (abipy.core.testing.AbipyTest static method) has_shg (abipy.electrons.optic.OpticNcFile attribute) has_skimage() (abipy.core.testing.AbipyTest static method) has_spectral_function (abipy.eph.sigeph.SigEPhFile attribute) has_spectral_function() (abipy.electrons.gw.SigresFile property) has_strain_terms (abipy.dfpt.ddb.DdbFile attribute) Has_Structure (class in abipy.core.mixins) has_timerev() (abipy.core.symmetries.AbinitSpaceGroup property) has_timrev (abipy.electrons.ebands.ElectronBands attribute) hasattrd() (in module abipy.tools.duck) have_disentangled_spin (abipy.wannier90.abiwan.AbiwanFile attribute) hdr (abipy.core.mixins.Has_Header attribute) header() (abipy.dfpt.ddb.DdbFile property) hirshfeld() (abipy.abio.inputs.Cut3DInput class method) hirshfeld_from_fhi_path() (abipy.abio.inputs.Cut3DInput class method) HirshfeldCharges (class in abipy.electrons.charges) HistFile (class in abipy.dynamics.hist) history_btn (abipy.panels.flows.FlowPanel attribute) HistoryRecord (class in abipy.flowtk.nodes) HistReader (class in abipy.dynamics.hist) HistRobot (class in abipy.dynamics.hist) homo_sk() (abipy.electrons.ebands.ElectronBands method) homos() (abipy.electrons.ebands.ElectronBands property) hsym_kpath (abipy.core.structure.Structure attribute) hsym_kpoints (abipy.core.structure.Structure attribute) hsym_stars (abipy.core.structure.Structure attribute) html_link() (abipy.abio.inputs.OpticVar method) html_with_copy_to_clipboard() (in module abipy.panels.structure) HtmlDiff (class in abipy.tools.devtools) HueGroup (class in abipy.abio.robots) hwan (abipy.wannier90.abiwan.AbiwanFile attribute) HWanR (class in abipy.wannier90.abiwan)

I

i_closest_gridpoints() (abipy.core.mesh3d.Mesh3D method) ibz (abipy.core.kpoints.Ktables attribute) ibz2kcalc (abipy.eph.sigeph.SigEPhFile attribute) ICoxpFile (class in abipy.electrons.lobster) idos (abipy.dfpt.phonons.PhononDos attribute) ieta0 (abipy.dfpt.frozen_phonons.FrozenPhonon attribute) ifc (abipy.dfpt.anaddbnc.AnaddbNcFile attribute), [1] ifc() (abipy.abio.inputs.AnaddbInput class method) ifc_cart_coord_ewald (abipy.dfpt.ifc.InteratomicForceConstants attribute) ifc_local_coord (abipy.dfpt.ifc.InteratomicForceConstants attribute) ifc_local_coord_ewald (abipy.dfpt.ifc.InteratomicForceConstants attribute) ifc_local_coord_short_range (abipy.dfpt.ifc.InteratomicForceConstants attribute) ifft() (abipy.core.func1d.Function1D method) iflat() (in module abipy.tools.numtools) iflat_nodes() (abipy.flowtk.flows.Flow method) iflat_tasks() (abipy.flowtk.flows.Flow method) iflat_tasks_wti() (abipy.flowtk.flows.Flow method) imag() (abipy.core.func1d.Function1D property) imag_fan0() (abipy.eph.sigeph.QpTempState property) imag_from_kk() (abipy.core.func1d.Function1D method) imag_qpe (abipy.eph.sigeph.QpTempState attribute) imag_qpe() (abipy.electrons.gw.QPState property) imag_sig0 (abipy.eph.sigeph.QpTempState attribute) in_notebook() (in module abipy.core.globals) in_spectator_mode() (abipy.flowtk.nodes.Node property) increase_mem() (abipy.flowtk.tasks.TaskManager method) increase_ncpus() (abipy.flowtk.tasks.TaskManager method) increase_resources() (abipy.flowtk.tasks.TaskManager method) increase_time() (abipy.flowtk.tasks.TaskManager method) index() (abipy.core.gsphere.GSphere method) (abipy.core.kpoints.KpointList method) index_direction() (abipy.dfpt.phtk.NonAnalyticalPh method) indsym() (abipy.core.structure.Structure property) infinite_flow() (in module abipy.flowtk.mocks) InfiniteFlow (class in abipy.flowtk.mocks) info (abipy.flowtk.tasks.AbinitBuild attribute) info() (abipy.flowtk.nodes.Dependency property) (abipy.flowtk.nodes.NodeHistory method) init_counter() (in module abipy.flowtk.nodes) initial_structure (abipy.abio.outputs.AbinitOutputFile attribute) initial_structure() (abipy.dynamics.hist.HistFile property) initial_structures (abipy.abio.outputs.AbinitOutputFile attribute) input_from_editor() (in module abipy.tools.iotools) InputDecoratorError InputVariable (class in abipy.abio.variable) inspect() (abipy.flowtk.flows.Flow method) (abipy.flowtk.tasks.PhononTask method) (abipy.flowtk.tasks.RelaxTask method) (abipy.flowtk.tasks.ScfTask method) install_config_files() (in module abipy.abilab) install_event_handlers() (abipy.flowtk.nodes.Node method) integral() (abipy.core.func1d.Function1D method) integral_value (abipy.core.func1d.Function1D attribute) integrate() (abipy.core.mesh3d.Mesh3D method) InteratomicForceConstants (class in abipy.dfpt.ifc) interp_kpts() (abipy.core.skw.ElectronInterpolator method) interp_kpts_and_enforce_degs() (abipy.core.skw.ElectronInterpolator method) interpolate() (abipy.electrons.ebands.ElectronBands method) (abipy.electrons.gw.SigresFile method) (abipy.eph.sigeph.SigEPhFile method) interpolate_ebands() (abipy.wannier90.abiwan.AbiwanFile method) inv_vectors (abipy.core.mesh3d.Mesh3D attribute) inverse() (abipy.core.symmetries.LatticeRotation method) InverseDielectricFunction (class in abipy.electrons.scr) ion_ioncell_relax_and_ebands_input() (in module abipy.abio.factories) ion_ioncell_relax_input() (in module abipy.abio.factories) ipath_from_ext() (abipy.flowtk.works.Work method)

ipw_edos_widget() (abipy.electrons.ebands.ElectronBands method) ipw_harmonic_thermo() (abipy.dfpt.phonons.PhononDosPlotter method) ipw_listdir() (in module abipy.tools.notebooks) ipw_select_plot() (abipy.dfpt.phonons.PhononBandsPlotter method) (abipy.dfpt.phonons.PhononDosPlotter method) (abipy.electrons.bse.MultipleMdfPlotter method) (abipy.electrons.ebands.ElectronBandsPlotter method) (abipy.electrons.ebands.ElectronDosPlotter method) ipw_visualize_widget() (abipy.waves.wfkfile.WfkFile method) irdvars_for_ext() (in module abipy.flowtk.utils) IrredZone (class in abipy.core.kpoints) irvec (abipy.wannier90.abiwan.AbiwanFile attribute) is_abiunit() (in module abipy.abio.abivars) is_abivar() (in module abipy.abio.abivars) is_available() (abipy.iotools.visualizer.Visualizer property) is_completed() (abipy.flowtk.qjobs.QueueJob property) is_critical() (abipy.flowtk.nodes.Status property) is_dfpt_task() (abipy.flowtk.tasks.AbinitTask property) is_diagonal() (in module abipy.tools.numtools) is_failed() (abipy.flowtk.qjobs.QueueJob property) is_file() (abipy.flowtk.nodes.Node property) is_flow() (abipy.flowtk.nodes.Node property) is_gamma() (abipy.core.kpoints.Kpoint method) is_gs_task() (abipy.flowtk.tasks.AbinitTask property) is_ibz() (abipy.core.kpoints.KpointList property) is_intlike() (in module abipy.tools.duck) is_listlike() (in module abipy.tools.duck) is_macosx_app (abipy.iotools.visualizer.Visualizer attribute) is_mpmesh() (abipy.core.kpoints.KpointList property) is_number_like() (in module abipy.tools.duck) is_path() (abipy.core.kpoints.KpointList property) is_proper (abipy.core.symmetries.LatticeRotation attribute) is_running() (abipy.flowtk.qjobs.QueueJob property) is_scf_run (abipy.electrons.gsr.GsrFile attribute) is_shift (abipy.core.kpoints.Ktables attribute) is_sortable() (abipy.abio.robots.Robot method) is_string() (in module abipy.tools.duck) is_symmorphic (abipy.core.symmetries.AbinitSpaceGroup attribute) is_task() (abipy.flowtk.nodes.Node property) is_work() (abipy.flowtk.nodes.Node property) isabifile() (in module abipy.abilab) iscomplexobj() (abipy.core.func1d.Function1D property) isE (abipy.core.symmetries.LatticeRotation attribute) isI (abipy.core.symmetries.LatticeRotation attribute) isinstance() (abipy.flowtk.nodes.Node method) isnc() (abipy.abio.inputs.AbinitInput property) (abipy.abio.inputs.MultiDataset property) (abipy.flowtk.tasks.AbinitTask property) (abipy.flowtk.works.Work property) isncfile() (abipy.flowtk.utils.File property) ispaw() (abipy.abio.inputs.AbinitInput property) (abipy.abio.inputs.MultiDataset property) (abipy.flowtk.tasks.AbinitTask property) (abipy.flowtk.works.Work property) issamek() (in module abipy.core.kpoints) items() (abipy.abio.robots.Robot method) (abipy.tools.plotting.ArrayPlotter method) iter_fftalgs() (abipy.tools.fftprof.FFTBenchmark method) iter_ixyz_r() (abipy.core.mesh3d.Mesh3D method) iter_lineopt() (abipy.abio.robots.Robot method) (abipy.dfpt.phonons.PhononBandsPlotter method) (abipy.electrons.ebands.ElectronBandsPlotter method) itup2s() (in module abipy.core.abinit_units) iv0() (abipy.dfpt.gruneisen.GrunsNcFile property) iw0 (abipy.dfpt.phonons.PhononDos attribute) (abipy.eph.a2f.A2f attribute) (abipy.eph.a2f.A2Ftr attribute)

J

JobStatus (class in abipy.flowtk.qjobs) json_dump() (abipy.flowtk.nodes.NodeResults method)

json_load() (abipy.flowtk.nodes.NodeResults class method) json_read_abinit_input() (abipy.core.testing.AbipyTest static method) JSON_SCHEMA (abipy.flowtk.nodes.NodeResults attribute)

K

kappa() (in module abipy.electrons.optic) kcalc2ibz (abipy.eph.sigeph.SigEPhFile attribute) keys() (abipy.abio.robots.Robot method) (abipy.tools.plotting.ArrayPlotter method) kidxs() (abipy.electrons.ebands.ElectronBands property) kindex() (abipy.electrons.ebands.ElectronBands method) (abipy.waves.wfkfile.WfkFile method) kmesh_from_mpdivs() (in module abipy.core.kpoints) Kpath (class in abipy.core.kpoints)

kpath_format (abipy.panels.structure.StructurePanel attribute) Kpoint (class in abipy.core.kpoints) KpointList (class in abipy.core.kpoints) kpoints() (abipy.core.mixins.Has_ElectronBands property) (abipy.electrons.scr.ScrFile property) KpointStar (class in abipy.core.kpoints) kppra (abipy.panels.structure.StructurePanel attribute) kptopt (abipy.electrons.ebands.ElectronBands attribute) ks_dirgaps (abipy.eph.sigeph.SigEPhFile attribute) Ktables (class in abipy.core.kpoints)

L

l1_norm (abipy.core.func1d.Function1D attribute) l2_norm (abipy.core.func1d.Function1D attribute) l2color (abipy.electrons.fatbands.FatBandsFile attribute) l2tex (abipy.electrons.fatbands.FatBandsFile attribute) label2mode (abipy.panels.structure.StructurePanel attribute) labels() (abipy.abio.robots.Robot property) lambda_iso (abipy.eph.a2f.A2f attribute) latex_formula() (abipy.core.structure.Structure property) latex_label (abipy.core.fields.Density attribute) (abipy.core.fields.VhartreePotential attribute) (abipy.core.fields.VhxcPotential attribute) (abipy.core.fields.VksPotential attribute) (abipy.core.fields.VxcPotential attribute) latex_name (abipy.electrons.scr.DielectricFunction attribute) (abipy.electrons.scr.InverseDielectricFunction attribute) (abipy.electrons.scr.Polarizability attribute) latex_symbol (abipy.eph.sigeph.EphSelfEnergy attribute) lattice() (abipy.core.kpoints.Kpoint property) lattice_dataframe() (abipy.core.restapi.DatabaseStructures property) lattice_vectors() (abipy.core.structure.Structure method) LatticeRotation (class in abipy.core.symmetries) launch() (abipy.flowtk.tasks.TaskManager method) LdaUDecorator (class in abipy.abio.decorators) LdauParams (class in abipy.flowtk.abiobjects) levelname (abipy.flowtk.nodes.HistoryRecord attribute) levelno (abipy.flowtk.nodes.HistoryRecord attribute) lexx_for_symbol() (abipy.flowtk.abiobjects.LexxParams method) LexxDecorator (class in abipy.abio.decorators) LexxParams (class in abipy.flowtk.abiobjects) likely_code_error() (abipy.flowtk.qjobs.QueueJob method)

line_density (abipy.panels.structure.StructurePanel attribute) linecolor (abipy.electrons.fatbands.FatBandsFile attribute) lineno (abipy.flowtk.nodes.HistoryRecord attribute) lines (abipy.core.kpoints.Kpath attribute) linestyle_qsamp (abipy.eph.a2f.A2fRobot attribute) linestyles_der (abipy.electrons.psps.PspsFile attribute) linewidth (abipy.electrons.fatbands.FatBandsFile attribute) linewidth_slider() (in module abipy.display.utils) linewidths() (abipy.dfpt.phonons.PhononBands property) (abipy.electrons.ebands.ElectronBands property) linspace() (abipy.abio.inputs.AbinitInput method) list_filepaths() (abipy.flowtk.utils.Directory method) list_ints() (in module abipy.tools.duck) listext() (abipy.flowtk.flows.Flow method) lo_to_splitting (abipy.panels.ddb.DdbFilePanel attribute) load_module() (abipy.flowtk.launcher.ScriptEditor method) load_modules() (abipy.flowtk.launcher.ScriptEditor method) LobsterAnalyzer (class in abipy.electrons.lobster) LobsterDoscarFile (class in abipy.electrons.lobster) LobsterInput (class in abipy.electrons.lobster) log_correction() (abipy.flowtk.nodes.Node method) lomo_sk() (abipy.electrons.ebands.ElectronBands method) lomos() (abipy.electrons.ebands.ElectronBands property) look_before_you_leap() (abipy.flowtk.flows.Flow method) lorentzian() (in module abipy.tools.numtools) luj_for_symbol() (abipy.flowtk.abiobjects.LdauParams method) LujForSpecie (class in abipy.flowtk.abiobjects) lumo_sk() (abipy.electrons.ebands.ElectronBands method) lumos() (abipy.electrons.ebands.ElectronBands property) lwindow (abipy.wannier90.abiwan.AbiwanFile attribute)

M

magnetization (abipy.core.fields.Density attribute) magnetization_field (abipy.core.fields.Density attribute) make_and_open_notebook() (abipy.core.mixins.NotebookWriter method) make_bec_inputs() (abipy.abio.inputs.AbinitInput method) make_dde_inputs() (abipy.abio.inputs.AbinitInput method) make_ddk_inputs() (abipy.abio.inputs.AbinitInput method) make_dfpt_effmass_input() (abipy.abio.inputs.AbinitInput method) make_dir() (abipy.flowtk.utils.File method) make_dte_inputs() (abipy.abio.inputs.AbinitInput method) make_ebands_input() (abipy.abio.inputs.AbinitInput method) make_edos_input() (abipy.abio.inputs.AbinitInput method) make_input() (abipy.flowtk.tasks.OpticTask method) make_light_tarfile() (abipy.flowtk.flows.Flow method) make_links() (abipy.flowtk.tasks.AnaddbTask method) (abipy.flowtk.tasks.OpticTask method) make_nscf_kptopt0_input() (abipy.abio.inputs.AbinitInput method) make_ph_inputs_qpoint() (abipy.abio.inputs.AbinitInput method) make_qadapter() (in module abipy.flowtk.qadapters) make_scheduler() (abipy.flowtk.flows.Flow method) make_strain_perts_inputs() (abipy.abio.inputs.AbinitInput method) make_tarfile() (abipy.flowtk.flows.Flow method) makedirs() (abipy.flowtk.utils.Directory method) map2rpn() (in module abipy.flowtk.utils) Marker (class in abipy.tools.plotting) marker_qsamp (abipy.eph.a2f.A2fRobot attribute) marker_size (abipy.electrons.fatbands.FatBandsFile attribute) marker_spin (abipy.electrons.fatbands.FatBandsFile attribute) (abipy.electrons.gw.SigresFile attribute) (abipy.eph.a2f.A2f attribute) (abipy.eph.a2f.A2Ftr attribute) (abipy.eph.sigeph.SigEPhFile attribute) markers_dropdown() (in module abipy.display.utils) mass_factor (abipy.dfpt.frozen_phonons.FrozenPhonon attribute) match_eigenvectors() (in module abipy.dfpt.phtk) max() (abipy.core.func1d.Function1D property) max_cores (abipy.flowtk.tasks.ParalHints attribute) max_cores() (abipy.flowtk.tasks.TaskManager property) max_efficiency (abipy.flowtk.tasks.ParalHints attribute) max_force (abipy.electrons.gsr.GsrFile attribute) max_mem_per_proc (abipy.flowtk.tasks.ParalHints attribute) max_speedup (abipy.flowtk.tasks.ParalHints attribute) maxfreq() (abipy.dfpt.phonons.PhononBands property) MayaviFieldAnimator (class in abipy.display.mvtk) mband() (abipy.core.mixins.Has_ElectronBands property) md_filepath() (abipy.flowtk.tasks.AnaddbTask property) MDF_TYPECPLX2TEX (abipy.electrons.bse.MultipleMdfPlotter attribute) MDF_TYPES (abipy.electrons.bse.MultipleMdfPlotter attribute) MdfFile (class in abipy.electrons.bse) MdfPlotter (class in abipy.electrons.bse) MdfReader (class in abipy.electrons.bse)

mem_per_proc() (abipy.flowtk.tasks.TaskManager property) merge() (abipy.eph.sigeph.QpTempList method) (abipy.flowtk.wrappers.Mrgddb method) (abipy.flowtk.wrappers.Mrgdvdb method) merge_dataframes_sk() (abipy.electrons.gw.SigresRobot method) merge_deps() (abipy.flowtk.nodes.Node method) merge_qpoints() (abipy.flowtk.wrappers.Mrgscr method) merge_scrfiles() (abipy.flowtk.works.QptdmWork method) mesh (abipy.core.kpoints.Ktables attribute) mesh() (abipy.core.func1d.Function1D property) Mesh3D (class in abipy.core.mesh3d) message (abipy.flowtk.nodes.HistoryRecord attribute) min() (abipy.core.func1d.Function1D property) minfreq() (abipy.dfpt.phonons.PhononBands property) mjson_load() (in module abipy.abilab) mjson_loads() (in module abipy.abilab) mjson_write() (in module abipy.abilab) mkdtemp() (abipy.core.testing.AbipyTest static method) mklabel() (in module abipy.electrons.psps) mnemonics() (abipy.abio.inputs.AbinitInput property) MoabJob (class in abipy.flowtk.qjobs) modes() (abipy.abio.inputs.AnaddbInput class method) modes_at_qpoint() (abipy.abio.inputs.AnaddbInput class method) module (abipy.flowtk.nodes.HistoryRecord attribute) mongo_assimilate() (abipy.flowtk.flows.Flow method) mongo_id() (abipy.flowtk.flows.Flow property) move() (abipy.flowtk.utils.File method) (abipy.flowtk.works.Work method) mp_match_btn (abipy.panels.structure.StructurePanel attribute) mp_match_structure() (in module abipy.core.structure) mp_search() (in module abipy.core.structure) mpdivs_shifts (abipy.core.kpoints.KpointList attribute) mpi_procs (abipy.panels.core.AbipyParameterized attribute) (abipy.panels.ddb.DdbFilePanel attribute) mpi_procs() (abipy.flowtk.tasks.TaskManager property) MpStructures (class in abipy.core.restapi) Mrgddb (class in abipy.flowtk.wrappers) Mrgdvdb (class in abipy.flowtk.wrappers) Mrgscr (class in abipy.flowtk.wrappers) msqd_dos (abipy.dfpt.phonons.PhdosFile attribute) MsqDos (class in abipy.dfpt.msqdos) mu_e (abipy.eph.sigeph.SigEPhFile attribute) MultiDataset (class in abipy.abio.inputs) multidimensional_optimization() (abipy.flowtk.tasks.ParalHints method) MultipleMdfPlotter (class in abipy.electrons.bse) mvanimate() (abipy.dynamics.hist.HistFile method) mvplot_trajectories() (abipy.dynamics.hist.HistFile method) mwan (abipy.wannier90.abiwan.AbiwanFile attribute) MyElasticTensor (class in abipy.dfpt.elastic) MyMPRester (class in abipy.core.restapi) MyPiezoTensor (class in abipy.dfpt.elastic)

N

n() (in module abipy.electrons.optic) n_directions() (abipy.dfpt.vsound.SoundVelocity property) n_displ() (abipy.dfpt.frozen_phonons.FrozenPhonon property) name (abipy.core.symmetries.LatticeRotation attribute) (abipy.panels.core.AbipyParameterized attribute) (abipy.panels.core.BaseRobotPanel attribute) (abipy.panels.core.PanelWithEbandsRobot attribute) (abipy.panels.core.PanelWithElectronBands attribute) (abipy.panels.ddb.DdbFilePanel attribute) (abipy.panels.flows.FlowPanel attribute) (abipy.panels.gsr.GsrFilePanel attribute) (abipy.panels.gsr.GsrRobotPanel attribute) (abipy.panels.phonons.PhononBandsPlotterPanel attribute) (abipy.panels.structure.StructurePanel attribute) name() (abipy.abio.variable.InputVariable property) (abipy.core.kpoints.Kpoint property) (abipy.core.kpoints.KpointStar property) (abipy.flowtk.nodes.Node property) name_tensor_list() (abipy.dfpt.elastic.ElasticData method) names() (abipy.core.kpoints.KpointList property) natom (abipy.dynamics.hist.HistReader attribute) natom() (abipy.dfpt.ddb.DdbFile property) natoms() (abipy.dfpt.qha.AbstractQHA property) nband() (abipy.core.mixins.Has_ElectronBands property) (abipy.electrons.ebands.ElectronBands property) nbz (abipy.core.kpoints.Ktables attribute) ncdump() (abipy.core.mixins.AbinitNcFile method) ncores_allocated() (abipy.flowtk.flows.Flow property) ncores_reserved() (abipy.flowtk.flows.Flow property) ncores_used() (abipy.flowtk.flows.Flow property) ndegen (abipy.wannier90.abiwan.AbiwanFile attribute) ndivsm (abipy.panels.ddb.DdbFilePanel attribute) ndtset() (abipy.abio.inputs.MultiDataset property) nelect() (abipy.core.mixins.Has_ElectronBands property) nelect_updown (abipy.core.fields.Density attribute) netcdf_name (abipy.core.fields.Density attribute) (abipy.core.fields.VhartreePotential attribute) (abipy.core.fields.VhxcPotential attribute) (abipy.core.fields.VksPotential attribute) (abipy.core.fields.VxcPotential attribute) (abipy.electrons.scr.DielectricFunction attribute) (abipy.electrons.scr.InverseDielectricFunction attribute) (abipy.electrons.scr.Polarizability attribute) netcdf_name() (abipy.electrons.scr.ScrFile property) new_with_decorators() (abipy.abio.inputs.AbinitInput method) new_with_fixed_mpi_omp() (abipy.flowtk.tasks.TaskManager method) new_with_irred_kpoints() (abipy.electrons.ebands.ElectronBands method) new_with_structure() (abipy.abio.inputs.AbinitInput method) new_with_vars() (abipy.abio.inputs.AbinitInput method) next_d2de_scf_cycle() (abipy.abio.outputs.AbinitOutputFile method) next_gs_scf_cycle() (abipy.abio.outputs.AbinitOutputFile method) ng() (abipy.electrons.scr.ScrFile property) ngqpt (abipy.eph.common.BaseEphReader attribute) nibz (abipy.core.kpoints.Ktables attribute) nimw() (abipy.electrons.scr.ScrFile property) nkpt() (abipy.core.mixins.Has_ElectronBands property) (abipy.waves.wfkfile.WfkFile property)

NLOpticalSusceptibilityTensor (class in abipy.tools.tensors) nntot (abipy.wannier90.abiwan.AbiwanFile attribute) Node (class in abipy.flowtk.nodes) node() (abipy.flowtk.nodes.Dependency property) node_from_nid() (abipy.flowtk.flows.Flow method) node_id() (abipy.flowtk.nodes.Node property) NodeCorrections (class in abipy.flowtk.nodes) NodeError NoDefaultProvided (class in abipy.tools.duck) NodeHistory (class in abipy.flowtk.nodes) NodeResults (class in abipy.flowtk.nodes) non_anal_directions() (abipy.dfpt.phonons.PhononBands property) non_anal_dyn_mat_eigenvect() (abipy.dfpt.phonons.PhononBands property) non_anal_phdispl_cart() (abipy.dfpt.phonons.PhononBands property) non_anal_phfreqs() (abipy.dfpt.phonons.PhononBands property) NonAnalyticalPh (class in abipy.dfpt.phtk) none_if_masked_array() (abipy.iotools.ETSF_Reader method) norm (abipy.core.kpoints.Kpoint attribute) norm() (abipy.core.structure.Structure method) norm2() (abipy.waves.pwwave.PWWaveFunction method) NotebookWriter (class in abipy.core.mixins) nqpt() (abipy.dfpt.phonons.PhononBands property) nqsmall (abipy.panels.ddb.DdbFilePanel attribute) nrew() (abipy.electrons.scr.ScrFile property) NscfConvergenceWarning (class in abipy.flowtk.events) NscfDdksWork (class in abipy.flowtk.dfpt_works) NscfTask (class in abipy.flowtk.tasks) nspden() (abipy.core.mixins.Has_ElectronBands property) nspinor() (abipy.core.mixins.Has_ElectronBands property) nsppol() (abipy.core.mixins.Has_ElectronBands property) (abipy.electrons.scissors.ScissorsBuilder property) ntemp() (abipy.eph.sigeph.QpTempList property) (abipy.eph.transportfile.TransportFile property) num_cores() (abipy.flowtk.tasks.TaskManager property) num_corrections() (abipy.flowtk.nodes.Node property) num_errored_tasks() (abipy.flowtk.flows.Flow property) num_excs() (abipy.flowtk.launcher.PyFlowScheduler property) num_qpoints() (abipy.electrons.bse.DielectricFunction property) num_spatial_symmetries() (abipy.core.symmetries.AbinitSpaceGroup property) num_steps (abipy.dynamics.hist.HistReader attribute) num_steps() (abipy.dynamics.hist.HistFile property) num_tasks() (abipy.flowtk.flows.Flow property) num_unconverged_tasks() (abipy.flowtk.flows.Flow property) num_valence_electrons() (abipy.abio.inputs.AbinitInput property) (abipy.core.structure.Structure method) number_of_atoms() (abipy.dfpt.ifc.InteratomicForceConstants property) number_of_neighbours() (abipy.dfpt.ifc.InteratomicForceConstants property) nums_and_text() (in module abipy.tools.text) nvols() (abipy.dfpt.gruneisen.GrunsNcFile property) (abipy.dfpt.qha.AbstractQHA property) nw() (abipy.electrons.scr.ScrFile property) nwan_spin (abipy.wannier90.abiwan.AbiwanFile attribute) nx() (abipy.core.mesh3d.Mesh3D property) ny() (abipy.core.mesh3d.Mesh3D property) nz() (abipy.core.mesh3d.Mesh3D property)

O

occfacts() (abipy.electrons.ebands.ElectronBands property) occtype (abipy.core.skw.ElectronInterpolator attribute) omega_log (abipy.eph.a2f.A2f attribute) omp_threads() (abipy.flowtk.tasks.TaskManager property) on_all_ok() (abipy.flowtk.abiphonopy.PhonopyGruneisenWork method) (abipy.flowtk.abiphonopy.PhonopyWork method) (abipy.flowtk.dfpt_works.ElasticWork method) (abipy.flowtk.effmass_works.EffMassAutoDFPTWork method) (abipy.flowtk.effmass_works.FrohlichZPRFlow method) (abipy.flowtk.flows.Flow method) (abipy.flowtk.gruneisen.GruneisenWork method) (abipy.flowtk.gs_works.EosWork method) (abipy.flowtk.qha.RelaxAndPhononWork method) (abipy.flowtk.works.BecWork method) (abipy.flowtk.works.DteWork method) (abipy.flowtk.works.PhononWfkqWork method) (abipy.flowtk.works.PhononWork method) (abipy.flowtk.works.QptdmWork method) on_border (abipy.core.kpoints.Kpoint attribute) on_corrections_btn() (abipy.panels.flows.FlowPanel method) on_debug_btn() (abipy.panels.flows.FlowPanel method) on_dep_ok() (abipy.flowtk.flows.Flow method) on_dims_btn() (abipy.panels.flows.FlowPanel method) on_ebands_btn() (abipy.panels.flows.FlowPanel method) on_ebands_plotter_btn() (abipy.panels.core.PanelWithEbandsRobot method) on_edos_plotter_btn() (abipy.panels.core.PanelWithEbandsRobot method) on_events_btn() (abipy.panels.flows.FlowPanel method) on_graphviz_btn() (abipy.panels.flows.FlowPanel method) on_gs_input_btn() (abipy.panels.structure.StructurePanel method) on_gsr_dataframe_btn() (abipy.panels.gsr.GsrRobotPanel method) on_handlers_btn() (abipy.panels.flows.FlowPanel method) on_history_btn() (abipy.panels.flows.FlowPanel method) on_mp_match_btn() (abipy.panels.structure.StructurePanel method)

on_ok() (abipy.flowtk.works.GKKPWork method) (abipy.flowtk.works.PhononWfkqWork method) (abipy.flowtk.works.RelaxWork method) on_phbands_plot_btn() (abipy.panels.phonons.PhononBandsPlotterPanel method) on_plot_ebands_btn() (abipy.panels.core.PanelWithElectronBands method) on_plot_edos_btn() (abipy.panels.core.PanelWithElectronBands method) on_plot_fermi_surface_btn() (abipy.panels.core.PanelWithElectronBands method) on_status_btn() (abipy.panels.flows.FlowPanel method) on_structures_btn() (abipy.panels.flows.FlowPanel method) on_vars_btn() (abipy.panels.flows.FlowPanel method) only_independent_chi_components() (abipy.abio.inputs.OpticInput method) opath_from_ext() (abipy.flowtk.nodes.FileNode method) (abipy.flowtk.works.Work method) open_browser() (abipy.core.restapi.MpStructures method) (abipy.tools.devtools.HtmlDiff method) open_file_phononwebsite() (in module abipy.dfpt.phtk) open_files() (abipy.flowtk.flows.Flow method) open_gsr() (abipy.flowtk.nodes.FileNode method) open_phbst() (abipy.flowtk.tasks.AnaddbTask method) open_phdos() (abipy.flowtk.tasks.AnaddbTask method) open_sigres() (abipy.flowtk.tasks.SigmaTask method) OpticError OpticInput (class in abipy.abio.inputs) OpticNcFile (class in abipy.electrons.optic) OpticReader (class in abipy.electrons.optic) OpticRobot (class in abipy.electrons.optic) OpticTask (class in abipy.flowtk.tasks) OpticVar (class in abipy.abio.inputs) order() (abipy.core.symmetries.LatticeRotation property) ordered_intersection() (abipy.abio.robots.Robot static method) oscillator_strength (abipy.dfpt.anaddbnc.AnaddbNcFile attribute) OutNcFile (class in abipy.abio.outputs) output_format (abipy.panels.structure.StructurePanel attribute)

P

pad_fermie (abipy.electrons.ebands.ElectronBands attribute) PanelWithEbandsRobot (class in abipy.panels.core) PanelWithElectronBands (class in abipy.panels.core) paral() (abipy.dfpt.raman.PowderIntensity property) ParalHints (class in abipy.flowtk.tasks) ParalHintsParser (class in abipy.flowtk.tasks) param (abipy.panels.core.AbipyParameterized attribute) (abipy.panels.core.BaseRobotPanel attribute) (abipy.panels.core.PanelWithEbandsRobot attribute) (abipy.panels.core.PanelWithElectronBands attribute) (abipy.panels.ddb.DdbFilePanel attribute) (abipy.panels.flows.FlowPanel attribute) (abipy.panels.gsr.GsrFilePanel attribute) (abipy.panels.gsr.GsrRobotPanel attribute) (abipy.panels.phonons.PhononBandsPlotterPanel attribute) (abipy.panels.structure.StructurePanel attribute) params (abipy.abio.outputs.OutNcFile attribute) (abipy.dfpt.anaddbnc.AnaddbNcFile attribute) (abipy.dfpt.ddb.DdbFile attribute) (abipy.dfpt.gruneisen.GrunsNcFile attribute) (abipy.dfpt.phonons.PhbstFile attribute) (abipy.dfpt.phonons.PhdosFile attribute) (abipy.dynamics.hist.HistFile attribute) (abipy.electrons.bse.MdfFile attribute) (abipy.electrons.eskw.EskwFile attribute) (abipy.electrons.fatbands.FatBandsFile attribute) (abipy.electrons.fold2bloch.Fold2BlochNcfile attribute) (abipy.electrons.gsr.GsrFile attribute) (abipy.electrons.gw.SigresFile attribute) (abipy.electrons.optic.OpticNcFile attribute) (abipy.electrons.psps.PspsFile attribute) (abipy.electrons.scr.ScrFile attribute) (abipy.eph.a2f.A2fFile attribute) (abipy.eph.sigeph.SigEPhFile attribute) (abipy.eph.transportfile.TransportFile attribute) (abipy.eph.v1sym.V1symFile attribute) (abipy.eph.wr.WrNcFile attribute) (abipy.wannier90.abiwan.AbiwanFile attribute) (abipy.waves.wfkfile.WfkFile attribute) params() (abipy.core.mixins.AbinitNcFile property) parse() (abipy.abio.abivars.AbinitInputParser method) (abipy.flowtk.events.EventsParser method) (abipy.flowtk.tasks.ParalHintsParser method) parse_timers() (abipy.flowtk.works.Work method) parse_timing() (abipy.flowtk.flows.Flow method) (abipy.flowtk.tasks.AbinitTask method) partial (abipy.electrons.lobster.CoxpFile attribute) path() (abipy.flowtk.utils.Directory property) (abipy.flowtk.utils.File property) path_in() (abipy.flowtk.utils.Directory method) path_in_workdir() (abipy.flowtk.works.Work method) path_join() (abipy.flowtk.utils.Directory method) pathname (abipy.flowtk.nodes.HistoryRecord attribute) pawecutdg (abipy.electrons.gsr.GsrFile attribute) PbsProJob (class in abipy.flowtk.qjobs) PBSSTAT_TO_SLURM (abipy.flowtk.qjobs.PbsProJob attribute) pconfs() (abipy.flowtk.tasks.AbinitTask property) pdos (abipy.electrons.lobster.LobsterDoscarFile attribute) perp() (abipy.dfpt.raman.PowderIntensity property) pertsy_qpt (abipy.eph.v1sym.V1symFile attribute) ph_ngqpt (abipy.eph.common.BaseEphReader attribute) PhaseDiagramResults (class in abipy.core.restapi) phbands() (abipy.core.mixins.Has_PhononBands property) (abipy.dfpt.phonons.PhbstFile property) (abipy.eph.a2f.A2fFile property) phbands_and_dos() (abipy.abio.inputs.AnaddbInput class method) phbands_dict() (abipy.dfpt.phonons.PhononBandsPlotter property) phbands_list() (abipy.dfpt.phonons.PhononBandsPlotter property) phbands_plotter_btn (abipy.panels.phonons.PhononBandsPlotterPanel attribute) phbands_plotter_mode (abipy.panels.phonons.PhononBandsPlotterPanel attribute) phbands_plotter_units (abipy.panels.phonons.PhononBandsPlotterPanel attribute) phbands_qpath_vol (abipy.dfpt.gruneisen.GrunsNcFile attribute) PhbstFile (class in abipy.dfpt.phonons) phdispl_cart_qibz (abipy.dfpt.gruneisen.GrunsNcFile attribute) phdos (abipy.dfpt.phonons.PhdosFile attribute) phdos() (abipy.dfpt.gruneisen.GrunsNcFile property) phdos_label_from_units() (in module abipy.core.abinit_units) phdos_list() (abipy.dfpt.phonons.PhononDosPlotter property) phdoses_dict() (abipy.dfpt.phonons.PhononBandsPlotter property) phdoses_list() (abipy.dfpt.phonons.PhononBandsPlotter property) PhdosFile (class in abipy.dfpt.phonons) PhdosReader (class in abipy.dfpt.phonons) phfactor_ev2units() (abipy.dfpt.phonons.PhononBands static method) (in module abipy.core.abinit_units) phonon (abipy.flowtk.abiphonopy.PhonopyWork attribute) PhononBands (class in abipy.dfpt.phonons) PhononBandsPlotter (class in abipy.dfpt.phonons) PhononBandsPlotterPanel (class in abipy.panels.phonons) PhononDos (class in abipy.dfpt.phonons) PhononDosPlotter (class in abipy.dfpt.phonons) phonons_from_gsinput() (in module abipy.abio.factories) PhononTask (class in abipy.flowtk.tasks) PhononWfkqWork (class in abipy.flowtk.works) PhononWork (class in abipy.flowtk.works) phonopy_tasks (abipy.flowtk.abiphonopy.PhonopyWork attribute) PhonopyGruneisenWork (class in abipy.flowtk.abiphonopy) PhonopyWork (class in abipy.flowtk.abiphonopy) phunit_tag() (in module abipy.core.abinit_units) pickle_dump() (abipy.core.mixins.NotebookWriter method) (abipy.core.skw.ElectronInterpolator method) (abipy.electrons.scissors.ScissorsBuilder method) (abipy.eph.sigeph.TdepElectronBands method) (abipy.flowtk.flows.Flow method) pickle_dumps() (abipy.flowtk.flows.Flow method) pickle_file() (abipy.flowtk.flows.Flow property) PICKLE_FNAME (abipy.flowtk.flows.Flow attribute) pickle_load() (abipy.core.mixins.NotebookWriter class method) (abipy.core.skw.ElectronInterpolator class method) (abipy.electrons.scissors.ScissorsBuilder class method) (abipy.eph.sigeph.TdepElectronBands class method) (abipy.flowtk.flows.Flow class method) pickle_loads() (abipy.flowtk.flows.Flow class method) pickle_protocol (abipy.flowtk.flows.Flow attribute) pid() (abipy.flowtk.launcher.PyFlowScheduler property) pid_file() (abipy.flowtk.flows.Flow property) (abipy.flowtk.launcher.PyFlowScheduler property) piezo_elastic() (abipy.abio.inputs.AnaddbInput class method) piezo_elastic_inputs_from_gsinput() (in module abipy.abio.factories) pjdos_symbol (abipy.dfpt.phonons.PhdosFile attribute) plot() (abipy.abio.outputs.AbinitLogFile method) (abipy.abio.outputs.AbinitOutputFile method) (abipy.core.func1d.Function1D method) (abipy.core.kpoints.KpointList method) (abipy.core.restapi.PhaseDiagramResults method) (abipy.core.structure.Structure method) (abipy.dfpt.ddb.DielectricTensorGenerator method) (abipy.dfpt.msqdos.MsqDos method) (abipy.dfpt.phonons.PhononBands method) (abipy.dfpt.phonons.PhononBandsPlotter method) (abipy.dfpt.phonons.PhononDos method) (abipy.dfpt.phonons.PhononDosPlotter method) (abipy.dfpt.vsound.SoundVelocity method) (abipy.dynamics.hist.HistFile method) (abipy.electrons.bse.DielectricFunction method) (abipy.electrons.bse.MdfPlotter method) (abipy.electrons.bse.MultipleMdfPlotter method) (abipy.electrons.ebands.ElectronBands method) (abipy.electrons.ebands.ElectronBandsPlotter method) (abipy.electrons.ebands.ElectronDos method) (abipy.electrons.ebands.ElectronDosPlotter method) (abipy.electrons.lobster.CoxpFile method) (abipy.electrons.lobster.ICoxpFile method) (abipy.electrons.lobster.LobsterAnalyzer method) (abipy.electrons.lobster.LobsterDoscarFile method) (abipy.electrons.psps.PspsFile method) (abipy.eph.a2f.A2f method) (abipy.eph.a2f.A2fFile method) (abipy.eph.eph_plotter.EphPlotter method) (abipy.eph.sigeph.EphSelfEnergy method) (abipy.eph.sigeph.QpTempState method) (abipy.eph.sigeph.TdepElectronBands method) (abipy.flowtk.utils.SparseHistogram method) (abipy.tools.fftprof.FFTBenchmark method) (abipy.tools.plotting.ArrayPlotter method) (abipy.tools.plotting.GenericDataFilePlotter method) (abipy.tools.plotting.GenericDataFilesPlotter method) (abipy.wannier90.abiwan.HWanR method) (abipy.wannier90.wout.WoutFile method) plot_a2() (abipy.eph.a2f.A2f method) plot_a2f_convergence() (abipy.eph.a2f.A2fRobot method) plot_a2f_interpol() (abipy.eph.a2f.A2fFile method) plot_a2fdata_convergence() (abipy.eph.a2f.A2fRobot method) plot_a2fw_all() (abipy.eph.sigeph.SigEPhFile method) plot_a2fw_skb() (abipy.eph.sigeph.SigEPhFile method) plot_a2fw_skb_sum() (abipy.eph.sigeph.SigEPhFile method) plot_all() (abipy.dfpt.ddb.DielectricTensorGenerator method) plot_all_segments() (abipy.electrons.effmass_analyzer.EffMassAnalyzer method) plot_anharmonic_contribution() (abipy.dfpt.frozen_phonons.FrozenPhonon method) plot_array() (in module abipy.tools.plotting) plot_atoms() (abipy.core.structure.Structure method) plot_average_pairs() (abipy.electrons.lobster.CoxpFile method) plot_ax() (abipy.core.func1d.Function1D method) (abipy.dfpt.phonons.PhononBands method) (abipy.dynamics.hist.HistFile method) (abipy.electrons.bse.DielectricFunction method) (abipy.electrons.ebands.ElectronBands method) (abipy.electrons.ebands.ElectronDos method) plot_band_edges() (abipy.electrons.ebands.ElectronBandsPlotter method) plot_bz() (abipy.core.mixins.Has_Structure method) (abipy.core.structure.Structure method) plot_centers_spread() (abipy.wannier90.wout.WoutFile method) plot_chi2() (abipy.electrons.optic.OpticNcFile method) plot_colored_matched() (abipy.dfpt.phonons.PhononBands method) plot_convergence() (abipy.abio.robots.Robot method) plot_convergence_items() (abipy.abio.robots.Robot method) plot_convergence_rank3() (abipy.electrons.optic.OpticRobot method) plot_coxp_with_dos() (abipy.electrons.lobster.LobsterAnalyzer method) plot_diff_at_qpoint() (abipy.eph.v1sym.V1symFile method) plot_dos() (abipy.eph.transportfile.TransportFile method)

plot_dos_idos() (abipy.dfpt.phonons.PhononDos method) (abipy.electrons.ebands.ElectronDos method) plot_dos_vs_kmeshes() (abipy.core.skw.ElectronInterpolator method) plot_doses() (abipy.dfpt.gruneisen.GrunsNcFile method) plot_ebands() (abipy.core.mixins.Has_ElectronBands method) (abipy.flowtk.works.BandStructureWork method) plot_ebands_btn (abipy.panels.core.PanelWithElectronBands attribute) plot_ebands_with_edos() (abipy.core.mixins.Has_ElectronBands method) (abipy.flowtk.works.BandStructureWork method) plot_edos_btn (abipy.panels.core.PanelWithElectronBands attribute) plot_edoses() (abipy.flowtk.works.BandStructureWork method) plot_eelf() (abipy.electrons.scr.ScrFile method) plot_eigvec_qp() (abipy.electrons.gw.SigresFile method) plot_ejdosvc() (abipy.electrons.ebands.ElectronBands method) plot_elastic_properties() (abipy.dfpt.anaddbnc.AnaddbNcRobot method) plot_emacro() (abipy.electrons.scr.ScrFile method) plot_emass() (abipy.electrons.effmass_analyzer.EffMassAnalyzer method) (abipy.electrons.effmass_analyzer.Segment method) plot_energies() (abipy.dfpt.qha.AbstractQHA method) (abipy.dfpt.qha.AbstractQmeshAnalyzer method) (abipy.dynamics.hist.HistFile method) plot_eph_strength() (abipy.eph.a2f.A2fFile method) plot_eps0w() (abipy.panels.ddb.DdbFilePanel method) plot_eps0w_btn (abipy.panels.ddb.DdbFilePanel attribute) plot_fatbands() (abipy.dfpt.phonons.PhononBands method) plot_fatbands_lview() (abipy.electrons.fatbands.FatBandsFile method) plot_fatbands_mview() (abipy.electrons.fatbands.FatBandsFile method) plot_fatbands_siteview() (abipy.electrons.fatbands.FatBandsFile method) plot_fatbands_typeview() (abipy.electrons.fatbands.FatBandsFile method) plot_fatbands_with_pjdos() (abipy.electrons.fatbands.FatBandsFile method) plot_fermi_surface_btn (abipy.panels.core.PanelWithElectronBands attribute) plot_ffspl() (abipy.electrons.psps.PspsFile method) plot_fit() (abipy.electrons.scissors.ScissorsBuilder method) plot_fit_energies() (abipy.dfpt.frozen_phonons.FrozenPhonon method) plot_fit_freqs_dir() (abipy.dfpt.vsound.SoundVelocity method) plot_gruns_bs() (abipy.dfpt.gruneisen.GrunsNcFile method) plot_gruns_scatter() (abipy.dfpt.gruneisen.GrunsNcFile method) plot_harmonic_thermo() (abipy.dfpt.phonons.PhononDos method) (abipy.dfpt.phonons.PhononDosPlotter method) plot_hwanr() (abipy.wannier90.abiwan.AbiwanRobot method) plot_intensity() (abipy.dfpt.raman.Raman method) plot_ion_relaxation() (abipy.flowtk.works.RelaxWork method) plot_ioncell_relaxation() (abipy.flowtk.works.RelaxWork method) plot_itemp() (abipy.eph.sigeph.TdepElectronBands method) plot_itemp_with_lws_vs_e0() (abipy.eph.sigeph.TdepElectronBands method) plot_ksbands_with_qpmarkers() (abipy.electrons.gw.SigresFile method) plot_labels() (in module abipy.display.mvtk) plot_lambda_convergence() (abipy.eph.a2f.A2fRobot method) plot_lattice_convergence() (abipy.abio.robots.Robot method) plot_lattice_vectors() (in module abipy.display.mvtk) plot_leo() (abipy.electrons.optic.OpticNcFile method) plot_leo_convergence() (abipy.electrons.optic.OpticRobot method) plot_line() (abipy.waves.pwwave.PWWaveFunction method) plot_line_neighbors() (abipy.waves.pwwave.PWWaveFunction method) plot_linear_epsilon() (abipy.electrons.optic.OpticNcFile method) plot_linewidths_sigeph() (abipy.eph.eph_plotter.EphPlotter method) plot_linopt() (abipy.electrons.optic.OpticNcFile method) plot_linopt_convergence() (abipy.electrons.optic.OpticRobot method) plot_longitudinal_fatbands() (abipy.dfpt.phonons.PhononBands method) plot_longitudinal_fraction() (abipy.dfpt.phonons.PhononBands method) plot_longitudinal_ifc() (abipy.dfpt.ifc.InteratomicForceConstants method) plot_longitudinal_ifc_ewald() (abipy.dfpt.ifc.InteratomicForceConstants method) plot_longitudinal_ifc_short_range() (abipy.dfpt.ifc.InteratomicForceConstants method) plot_lt_character() (abipy.dfpt.phonons.PhononBands method) plot_lws_vs_e0() (abipy.electrons.ebands.ElectronBands method) (abipy.eph.sigeph.SigEPhFile method) (abipy.eph.sigeph.TdepElectronBands method) plot_maxw() (abipy.eph.wr.WrNcFile method) plot_mayaview() (abipy.core.structure.Structure method) plot_mdfs() (abipy.electrons.bse.MdfFile method) plot_mdftype_cplx() (abipy.electrons.bse.MultipleMdfPlotter method) plot_mobility() (abipy.eph.transportfile.TransportFile method) plot_networkx() (abipy.flowtk.flows.Flow method) plot_nuterms() (abipy.eph.a2f.A2f method) plot_pawdos_terms() (abipy.electrons.fatbands.FatBandsFile method) plot_pdos_site() (abipy.electrons.lobster.LobsterDoscarFile method) plot_phbands() (abipy.core.mixins.Has_PhononBands method) plot_phbands_and_phdos() (abipy.panels.ddb.DdbFilePanel method) plot_phbands_btn (abipy.panels.ddb.DdbFilePanel attribute) plot_phbands_with_gruns() (abipy.dfpt.gruneisen.GrunsNcFile method) plot_phbs() (abipy.dfpt.qha.AbstractQHA method) plot_phdispl() (abipy.dfpt.phonons.PhononBands method) (abipy.dfpt.phonons.PhononBandsPlotter method) plot_phdispl_cartdirs() (abipy.dfpt.phonons.PhononBands method) plot_phonons_occ() (abipy.eph.eph_plotter.EphPlotter method) plot_pjdos_cartdirs_site() (abipy.dfpt.phonons.PhdosFile method) plot_pjdos_cartdirs_type() (abipy.dfpt.phonons.PhdosFile method) plot_pjdos_lview() (abipy.electrons.fatbands.FatBandsFile method) plot_pjdos_type() (abipy.dfpt.phonons.PhdosFile method) plot_pjdos_typeview() (abipy.electrons.fatbands.FatBandsFile method) plot_pots_at_qpoint() (abipy.eph.v1sym.V1symFile method) plot_qpbands() (abipy.electrons.scissors.ScissorsBuilder method) plot_qpbands_ibz() (abipy.electrons.gw.SigresFile method) plot_qpbands_ibzt() (abipy.eph.sigeph.SigEPhFile method) plot_qpdata_conv_skb() (abipy.electrons.gw.SigresRobot method) (abipy.eph.sigeph.SigEPhRobot method) plot_qpdata_t() (abipy.eph.sigeph.SigEPhFile method) plot_qpe_vs_e0() (abipy.electrons.scissors.ScissorsBuilder method) plot_qpfield_vs_e0() (abipy.electrons.gw.SigresRobot method) (abipy.eph.sigeph.SigEPhRobot method) plot_qpgaps() (abipy.electrons.gw.SigresFile method) plot_qpgaps_convergence() (abipy.electrons.gw.SigresRobot method) (abipy.eph.sigeph.SigEPhRobot method) plot_qpgaps_t() (abipy.eph.sigeph.SigEPhFile method) (abipy.eph.sigeph.SigEPhRobot method) plot_qps_vs_e0() (abipy.electrons.gw.SigresFile method) (abipy.eph.sigeph.SigEPhFile method) plot_qpsolution() (abipy.eph.sigeph.EphSelfEnergy method) plot_scatter3d() (abipy.electrons.ebands.ElectronBands method) plot_selfenergy_conv() (abipy.electrons.gw.SigresRobot method) (abipy.eph.sigeph.SigEPhRobot method) plot_shg() (abipy.electrons.optic.OpticNcFile method) plot_shg_convergence() (abipy.electrons.optic.OpticRobot method) plot_site_pairs_partial() (abipy.electrons.lobster.CoxpFile method) plot_site_pairs_total() (abipy.electrons.lobster.CoxpFile method) plot_spectral_functions() (abipy.electrons.gw.SigresFile method) plot_spilling() (abipy.electrons.fatbands.FatBandsFile method) plot_structure() (in module abipy.display.mvtk) plot_tau_vtau() (abipy.eph.sigeph.SigEPhFile method) plot_tc_vs_mustar() (abipy.eph.a2f.A2f method) plot_tcore_qspace() (abipy.electrons.psps.PspsFile method) plot_tcore_rspace() (abipy.electrons.psps.PspsFile method) plot_tdep() (abipy.eph.sigeph.EphSelfEnergy method) plot_tensor() (abipy.dfpt.msqdos.MsqDos method) plot_thermal_expansion_coeff() (abipy.dfpt.qha.AbstractQHA method) (abipy.dfpt.qha.AbstractQmeshAnalyzer method) plot_transitions() (abipy.electrons.ebands.ElectronBands method) plot_uiso() (abipy.dfpt.msqdos.MsqDos method) plot_unfolded() (abipy.electrons.fold2bloch.Fold2BlochNcfile method) plot_unit_cell() (in module abipy.display.mvtk) (in module abipy.tools.plotting) plot_up_minus_down() (abipy.electrons.ebands.ElectronDos method) plot_vlocq() (abipy.electrons.psps.PspsFile method) plot_vol_vs_t() (abipy.dfpt.qha.AbstractQHA method) (abipy.dfpt.qha.AbstractQmeshAnalyzer method) plot_vs_e0() (abipy.eph.sigeph.QpTempList method) plot_vs_w() (abipy.dfpt.ddb.DielectricTensorGenerator method) plot_vsound() (abipy.panels.ddb.DdbFilePanel method) plot_vsound_btn (abipy.panels.ddb.DdbFilePanel attribute) plot_vtk() (abipy.core.structure.Structure method) plot_vvdos() (abipy.eph.transportfile.TransportFile method) plot_wigner_seitz() (in module abipy.display.mvtk) plot_with_a2f() (abipy.eph.a2f.A2fFile method) plot_with_edos() (abipy.electrons.ebands.ElectronBands method) plot_with_lambda() (abipy.eph.a2f.A2f method) plot_with_phdos() (abipy.dfpt.phonons.PhononBands method) plot_xrd() (abipy.core.structure.Structure method) plot_xy_with_hue() (abipy.abio.robots.Robot static method) Polarizability (class in abipy.electrons.scr) pop_irdvars() (abipy.abio.inputs.AbinitInput method) pop_label() (abipy.abio.robots.Robot method) pop_par_vars() (abipy.abio.inputs.AbinitInput method) pop_tolerances() (abipy.abio.inputs.AbinitInput method) pop_vars() (abipy.abio.inputs.AbstractInput method) pos (abipy.flowtk.works.Work attribute) pos_str() (abipy.flowtk.works.Work property) posneg_marker() (abipy.tools.plotting.Marker method) PotNcFile (class in abipy.electrons.denpot) PowderIntensity (class in abipy.dfpt.raman) pressure (abipy.electrons.gsr.GsrFile attribute) print_bz2ibz() (abipy.core.kpoints.Ktables method) print_dataframes() (abipy.core.restapi.PhaseDiagramResults method) print_doc() (in module abipy.tools.notebooks) print_neighbors() (abipy.core.structure.Structure method) print_qps() (abipy.electrons.gw.SigresFile method) print_results() (abipy.core.restapi.DatabaseStructures method) print_source() (in module abipy.tools.notebooks) print_source_in_module() (in module abipy.tools.notebooks) processes() (abipy.flowtk.works.Work property) Product (class in abipy.flowtk.nodes) product() (abipy.abio.inputs.AbinitInput method) product_dict() (in module abipy.abio.inputs) products (abipy.flowtk.nodes.Dependency attribute) products() (abipy.flowtk.nodes.FileNode property) profile() (in module abipy.tools.devtools) prune_ord() (in module abipy.tools.numtools) pseudo() (in module abipy.data) pseudos() (abipy.abio.inputs.AbinitInput property) (abipy.abio.inputs.MultiDataset property) (abipy.flowtk.tasks.AbinitTask property) (in module abipy.data) PspsFile (class in abipy.electrons.psps) PspsReader (class in abipy.electrons.psps) push_exceptions() (abipy.flowtk.nodes.NodeResults method) PWWaveFunction (class in abipy.waves.pwwave) pyfile() (abipy.flowtk.flows.Flow property) PyFlowScheduler (class in abipy.flowtk.launcher) pygmentize() (abipy.tools.devtools.HtmlDiff method) PyLauncher (class in abipy.flowtk.launcher)

Q

qadapter() (abipy.flowtk.tasks.TaskManager property) qads() (abipy.flowtk.tasks.TaskManager property) qfrac_coords() (abipy.electrons.bse.DielectricFunction property) (abipy.electrons.bse.MdfFile property) QHA (class in abipy.dfpt.qha) QHA3P (class in abipy.dfpt.qha) QHA3PF (class in abipy.dfpt.qha) QhaFlow (class in abipy.flowtk.qha) QHAQmeshAnalyzer (class in abipy.dfpt.qha) qibz (abipy.dfpt.gruneisen.GrunsNcFile attribute) qindex() (abipy.dfpt.ddb.DdbFile method) (abipy.dfpt.phonons.PhbstFile method) (abipy.dfpt.phonons.PhononBands method) qindex_qpoint() (abipy.dfpt.phonons.PhbstFile method) (abipy.dfpt.phonons.PhononBands method) qp_dirgaps_t (abipy.eph.sigeph.SigEPhFile attribute) qpeme0 (abipy.eph.sigeph.QpTempState attribute) qpeme0() (abipy.electrons.gw.QPState property) qpgaps (abipy.electrons.gw.SigresFile attribute) qplist_spin (abipy.electrons.gw.SigresFile attribute) (abipy.eph.sigeph.SigEPhFile attribute)

qpoints (abipy.electrons.bse.MdfReader attribute) (abipy.eph.v1sym.V1symFile attribute) qpoints() (abipy.dfpt.ddb.DdbFile property) (abipy.dfpt.phonons.PhbstFile property) (abipy.electrons.bse.MdfFile property) QPState (class in abipy.electrons.gw) qpt_cart_coords() (abipy.dfpt.frozen_phonons.FrozenPhonon property) QptdmWork (class in abipy.flowtk.works) QpTempList (class in abipy.eph.sigeph) QpTempState (class in abipy.eph.sigeph) QTYPE (abipy.flowtk.qjobs.BlueGeneJob attribute) (abipy.flowtk.qjobs.MoabJob attribute) (abipy.flowtk.qjobs.PbsProJob attribute) (abipy.flowtk.qjobs.QueueJob attribute) (abipy.flowtk.qjobs.SgeJob attribute) (abipy.flowtk.qjobs.ShellJob attribute) (abipy.flowtk.qjobs.SlurmJob attribute) (abipy.flowtk.qjobs.TorqueJob attribute) quadratic_fit_function() (in module abipy.dfpt.frozen_phonons) QueueJob (class in abipy.flowtk.qjobs)

R

Raman (class in abipy.dfpt.raman) random() (abipy.core.mesh3d.Mesh3D method) rapidfire() (abipy.flowtk.flows.Flow method) (abipy.flowtk.launcher.PyLauncher method) rc_list() (in module abipy.core.kpoints) re_fan0() (abipy.eph.sigeph.QpTempState property) re_qpe (abipy.eph.sigeph.QpTempState attribute) re_qpe() (abipy.electrons.gw.QPState property) re_sig0 (abipy.eph.sigeph.QpTempState attribute) read() (abipy.flowtk.utils.File method) read_a2f() (abipy.eph.a2f.A2fReader method) read_a2feph_skb() (abipy.eph.sigeph.SigmaPhReader method) read_all_structures() (abipy.dynamics.hist.HistReader method) read_allqps() (abipy.eph.sigeph.SigmaPhReader method) read_amu_symbol() (abipy.iotools.ETSF_Reader method) read_amuz_dict() (abipy.dfpt.gruneisen.GrunsReader method) read_cart_forces() (abipy.dynamics.hist.HistReader method) read_cart_stress_tensors() (abipy.dynamics.hist.HistReader method) read_coresd() (abipy.electrons.psps.PspsReader method) read_doses() (abipy.dfpt.gruneisen.GrunsReader method) read_edos() (abipy.eph.a2f.A2fReader method) read_eelf() (abipy.electrons.scr.ScrReader method) read_emacro_lf() (abipy.electrons.scr.ScrReader method) read_emacro_nlf() (abipy.electrons.scr.ScrReader method) read_eterms() (abipy.dynamics.hist.HistReader method) read_etotals() (abipy.flowtk.works.Work method) read_exc_mdf() (abipy.electrons.bse.MdfReader method) read_gwnlf_mdf() (abipy.electrons.bse.MdfReader method) read_lineps() (abipy.electrons.optic.OpticReader method) read_msq_dos() (abipy.dfpt.phonons.PhdosReader method) read_ngfft3() (abipy.iotools.ETSF_Reader method) read_non_anal_from_file() (abipy.dfpt.phonons.PhononBands method) read_params() (abipy.electrons.bse.MdfReader method) (abipy.electrons.scr.ScrReader method) read_phbands_on_qpath() (abipy.dfpt.gruneisen.GrunsReader method) read_phbands_qpath() (abipy.eph.a2f.A2fReader method) read_phdos() (abipy.dfpt.phonons.PhdosReader method) read_phgamma_qpath() (abipy.eph.a2f.A2fReader method) read_phlambda_qpath() (abipy.eph.a2f.A2fReader method) read_pjdos_atdir() (abipy.dfpt.phonons.PhdosReader method) read_pjdos_symbol_dict() (abipy.dfpt.phonons.PhdosReader method) read_pjdos_symbol_xyz_dict() (abipy.dfpt.phonons.PhdosReader method) read_pjdos_type() (abipy.dfpt.phonons.PhdosReader method) read_projectors() (abipy.electrons.psps.PspsReader method) read_qp() (abipy.eph.sigeph.SigmaPhReader method) read_qplist_sk() (abipy.eph.sigeph.SigmaPhReader method) read_reduced_forces() (abipy.dynamics.hist.HistReader method) read_rpanlf_mdf() (abipy.electrons.bse.MdfReader method) read_sigee_skb() (abipy.electrons.gw.SigresFile method) read_sigeph_skb() (abipy.eph.sigeph.SigmaPhReader method) read_string() (abipy.iotools.ETSF_Reader method) read_structure() (abipy.iotools.ETSF_Reader method) read_structures() (abipy.dfpt.gruneisen.GrunsReader method) read_tcorespl() (abipy.electrons.psps.PspsReader method) read_tensor3_terms() (abipy.electrons.optic.OpticReader method) read_v1_at_iq() (abipy.eph.v1sym.V1symFile method) read_vlspl() (abipy.electrons.psps.PspsReader method) read_wggmat() (abipy.electrons.scr.ScrReader method) read_wslice() (abipy.electrons.scr.ScrReader method) readlines() (abipy.flowtk.utils.File method) real() (abipy.core.func1d.Function1D property) real_from_kk() (abipy.core.func1d.Function1D method) received_signal() (abipy.flowtk.qjobs.QueueJob method) reciprocal_lattice() (abipy.core.kpoints.KpointList property) (abipy.core.structure.Structure property) (abipy.electrons.ebands.ElectronBands property)

reduce_dilatmx() (abipy.flowtk.tasks.RelaxTask method) ref_file() (in module abipy.data) ref_files() (in module abipy.data) refine() (abipy.core.structure.Structure method) reflectivity() (abipy.tools.tensors.DielectricTensor method) (in module abipy.electrons.optic) register() (abipy.flowtk.works.Work method) register_decorator() (abipy.abio.inputs.AbinitInput method) register_gridfs_files() (abipy.flowtk.nodes.NodeResults method) register_task() (abipy.flowtk.flows.Flow method) (abipy.flowtk.works.Work method) register_work() (abipy.flowtk.flows.Flow method) register_work_from_cbk() (abipy.flowtk.flows.Flow method) RelaxAndPhononWork (class in abipy.flowtk.qha) RelaxConvergenceWarning (class in abipy.flowtk.events) RelaxTask (class in abipy.flowtk.tasks) RelaxWork (class in abipy.flowtk.works) reload() (abipy.flowtk.flows.Flow method) relpath() (abipy.flowtk.utils.Directory property) (abipy.flowtk.utils.File property) relworkdir() (abipy.flowtk.nodes.Node property) remap_labels() (abipy.abio.robots.Robot method) remove() (abipy.flowtk.utils.File method) remove_deps() (abipy.flowtk.nodes.Node method) remove_duplicated() (abipy.core.kpoints.KpointList method) remove_exts() (abipy.flowtk.utils.Directory method) remove_tags() (abipy.abio.inputs.AbinitInput method) (abipy.abio.inputs.MultiDataset method) remove_vars() (abipy.abio.inputs.AbstractInput method) rename_abiext() (abipy.flowtk.utils.Directory method) replace_block_for_qpoint() (abipy.dfpt.ddb.DdbFile method) replicate_input() (abipy.abio.inputs.MultiDataset class method) report_exception() (abipy.flowtk.events.EventsParser method) repr_html_from_abinit_string() (in module abipy.abio.abivars_db) rescale() (in module abipy.electrons.psps) reset() (abipy.flowtk.launcher.ScriptEditor method) reset_from_scratch() (abipy.flowtk.tasks.AbinitTask method) (abipy.flowtk.tasks.OpticTask method) reshape() (abipy.core.mesh3d.Mesh3D method) residm (abipy.electrons.gsr.GsrFile attribute) restart() (abipy.flowtk.tasks.AbinitTask method) (abipy.flowtk.tasks.NscfTask method) (abipy.flowtk.tasks.RelaxTask method) (abipy.flowtk.tasks.ScfTask method) (abipy.flowtk.tasks.SigmaTask method) Results (abipy.flowtk.flows.Flow attribute) (abipy.flowtk.nodes.Node attribute) (abipy.flowtk.tasks.AbinitTask attribute) return_straceback_ifexc() (in module abipy.tools.decorators) rm_and_build() (abipy.flowtk.flows.Flow method) rm_indatadir() (abipy.flowtk.works.Work method) rm_outdatadir() (abipy.flowtk.works.Work method) rm_tmpdatadir() (abipy.flowtk.works.Work method) rmtree() (abipy.flowtk.flows.Flow method) (abipy.flowtk.utils.Directory method) (abipy.flowtk.works.Work method) Robot (class in abipy.abio.robots) rocksalt() (abipy.core.structure.Structure class method) root_inv() (abipy.core.symmetries.LatticeRotation property) rpanlf_mdf (abipy.electrons.bse.MdfFile attribute) rpoint() (abipy.core.mesh3d.Mesh3D method) rpoints (abipy.core.mesh3d.Mesh3D attribute) rreplace() (in module abipy.tools.text) run_nbpath() (abipy.core.testing.AbipyTest method) run_qlist() (abipy.dfpt.qha.QHAQmeshAnalyzer method) runlevel() (abipy.abio.inputs.AbinitInput property)

S

s2itup() (in module abipy.core.abinit_units) S_ABICRITICAL (abipy.flowtk.nodes.Node attribute) S_CANCELLED (abipy.flowtk.qjobs.QueueJob attribute) S_COMPLETED (abipy.flowtk.qjobs.QueueJob attribute) S_DONE (abipy.flowtk.nodes.Node attribute) S_ERROR (abipy.flowtk.nodes.Node attribute) S_FAILED (abipy.flowtk.qjobs.QueueJob attribute) S_INIT (abipy.flowtk.nodes.Node attribute) S_LOCKED (abipy.flowtk.nodes.Node attribute) S_NODEFAIL (abipy.flowtk.qjobs.QueueJob attribute) S_OK (abipy.flowtk.nodes.Node attribute) S_PENDING (abipy.flowtk.qjobs.QueueJob attribute) S_PREEMPTED (abipy.flowtk.qjobs.QueueJob attribute) S_QCRITICAL (abipy.flowtk.nodes.Node attribute) S_READY (abipy.flowtk.nodes.Node attribute) S_RESIZING (abipy.flowtk.qjobs.QueueJob attribute) S_RUN (abipy.flowtk.nodes.Node attribute) S_RUNNING (abipy.flowtk.qjobs.QueueJob attribute) S_SUB (abipy.flowtk.nodes.Node attribute) S_SUSPENDED (abipy.flowtk.qjobs.QueueJob attribute) S_TIMEOUT (abipy.flowtk.qjobs.QueueJob attribute) S_UNCONVERGED (abipy.flowtk.nodes.Node attribute) S_UNKNOWN (abipy.flowtk.qjobs.QueueJob attribute) saturation_slider() (in module abipy.display.utils) save_lastnode_id() (in module abipy.flowtk.nodes) scale_lattice() (abipy.core.structure.Structure method) scan_dir() (abipy.abio.robots.Robot method) scdims (abipy.flowtk.abiphonopy.PhonopyGruneisenWork attribute) (abipy.flowtk.abiphonopy.PhonopyWork attribute) scf_for_phonons() (in module abipy.abio.factories) scf_phonons_inputs() (in module abipy.abio.factories) scf_piezo_elastic_inputs() (in module abipy.abio.factories) scf_tolvar() (abipy.abio.inputs.AbinitInput property) ScfConvergenceWarning (class in abipy.flowtk.events) ScfTask (class in abipy.flowtk.tasks) Scissors (class in abipy.electrons.scissors) scissors_spin() (abipy.electrons.scissors.ScissorsBuilder property) ScissorsBuilder (class in abipy.electrons.scissors) ScrFile (class in abipy.electrons.scr) ScriptEditor (class in abipy.flowtk.launcher) ScrReader (class in abipy.electrons.scr) Segment (class in abipy.electrons.effmass_analyzer) select_band_edges() (abipy.electrons.effmass_analyzer.EffMassAnalyzer method) select_cbm() (abipy.electrons.effmass_analyzer.EffMassAnalyzer method) select_files() (abipy.flowtk.tasks.AbinitTask method) select_kpoint_band() (abipy.electrons.effmass_analyzer.EffMassAnalyzer method) select_qadapter() (abipy.flowtk.tasks.TaskManager method) select_tasks() (abipy.flowtk.flows.Flow method) select_vbm() (abipy.electrons.effmass_analyzer.EffMassAnalyzer method) select_with_condition() (abipy.flowtk.tasks.ParalHints method) send_email() (abipy.flowtk.launcher.PyFlowScheduler method) send_signal() (abipy.flowtk.nodes.Node method) set_abi_spacegroup() (abipy.core.structure.Structure method) set_autokmesh() (abipy.abio.inputs.AbinitInput method) set_autoqmesh() (abipy.abio.inputs.AnaddbInput method) set_autospinat() (abipy.abio.inputs.AbinitInput method) set_axlims() (in module abipy.tools.plotting) set_basis_functions_from_abinit_pseudos() (abipy.electrons.lobster.LobsterInput method) set_basis_functions_from_potcar() (abipy.electrons.lobster.LobsterInput method) set_comment() (abipy.abio.inputs.AbinitInput method) set_eos() (abipy.dfpt.qha.AbstractQHA method) (abipy.dfpt.qha.AbstractQmeshAnalyzer method) set_fermie() (abipy.electrons.ebands.ElectronBands method) set_fermie_from_edos() (abipy.electrons.ebands.ElectronBands method) set_fermie_to_vbm (abipy.panels.core.PanelWithElectronBands attribute) set_fermie_to_vbm() (abipy.electrons.ebands.ElectronBands method) set_flow() (abipy.flowtk.works.Work method) set_gamma_sampling() (abipy.abio.inputs.AbinitInput method) set_garbage_collector() (abipy.flowtk.flows.Flow method) set_gc() (abipy.flowtk.nodes.Node method) set_kmesh() (abipy.abio.inputs.AbinitInput method) set_kpath() (abipy.abio.inputs.AbinitInput method) (abipy.wannier90.win.Wannier90Input method) set_kptgw() (abipy.abio.inputs.AbinitInput method) set_manager() (abipy.flowtk.works.Work method) set_mem_per_proc() (abipy.flowtk.tasks.TaskManager method) set_mnemonics() (abipy.abio.inputs.AbinitInput method) set_mpi_procs() (abipy.flowtk.tasks.TaskManager method) set_name() (abipy.core.kpoints.Kpoint method) (abipy.flowtk.nodes.Node method) set_node_id() (abipy.flowtk.nodes.Node method) set_omp_threads() (abipy.flowtk.tasks.TaskManager method) set_pconfs() (abipy.flowtk.tasks.AbinitTask method) set_phdos_qmesh() (abipy.abio.inputs.AbinitInput method) set_pyfile() (abipy.flowtk.flows.Flow method) set_qpath() (abipy.abio.inputs.AbinitInput method) (abipy.abio.inputs.AnaddbInput method) set_spectator_mode() (abipy.flowtk.flows.Flow method) set_spell_check() (abipy.abio.inputs.AbinitInput method) (abipy.abio.inputs.AnaddbInput method) (abipy.wannier90.win.Wannier90Input method) set_spin_mode() (abipy.abio.inputs.AbinitInput method) set_status_exitcode_signal() (abipy.flowtk.qjobs.QueueJob method) set_structure() (abipy.abio.inputs.AbinitInput method) set_user_config_taskmanager() (in module abipy.flowtk.tasks) set_vars() (abipy.abio.inputs.AbstractInput method) (abipy.flowtk.tasks.OpticTask method) set_vars_ifnotin() (abipy.abio.inputs.AbstractInput method) set_weight() (abipy.core.kpoints.Kpoint method) set_workdir() (abipy.flowtk.flows.Flow method) (abipy.flowtk.tasks.OpticTask method) (abipy.flowtk.works.Work method) setup() (abipy.flowtk.tasks.AbinitTask method) (abipy.flowtk.tasks.AnaddbTask method) (abipy.flowtk.tasks.NscfTask method) (abipy.flowtk.tasks.OpticTask method) (abipy.flowtk.works.Work method) SgeJob (class in abipy.flowtk.qjobs) shape() (abipy.dfpt.phonons.PhononBands property) (abipy.electrons.ebands.ElectronBands property) shebang() (abipy.flowtk.launcher.ScriptEditor method) shell() (abipy.flowtk.launcher.ScriptEditor property) ShellJob (class in abipy.flowtk.qjobs) show_abierrors() (abipy.flowtk.flows.Flow method) show_bz() (abipy.core.mixins.Has_Structure method) show_corrections() (abipy.flowtk.flows.Flow method) show_dependencies() (abipy.flowtk.flows.Flow method) show_event_handlers() (abipy.flowtk.nodes.Node method) show_events() (abipy.flowtk.flows.Flow method) show_files() (abipy.abio.robots.Robot method) show_history() (abipy.flowtk.flows.Flow method) show_info() (abipy.flowtk.flows.Flow method) show_inputs() (abipy.flowtk.flows.Flow method) show_qouts() (abipy.flowtk.flows.Flow method) show_receivers() (abipy.flowtk.flows.Flow method) show_status() (abipy.flowtk.flows.Flow method) show_summary() (abipy.flowtk.flows.Flow method) show_tricky_tasks() (abipy.flowtk.flows.Flow method) shutdown() (abipy.flowtk.launcher.PyFlowScheduler method) SigEPhFile (class in abipy.eph.sigeph) SigEPhRobot (class in abipy.eph.sigeph) sigkpt2index() (abipy.eph.sigeph.SigEPhFile method) (abipy.eph.sigeph.SigmaPhReader method) sigma_kpoints() (abipy.electrons.gw.SigresFile property) (abipy.eph.sigeph.SigEPhFile property) SigmaConvWork (class in abipy.flowtk.works) SigmaPhReader (class in abipy.eph.sigeph) SigmaTask (class in abipy.flowtk.tasks) sign_sqrtekb() (abipy.electrons.psps.VnlProjector property) sigres_path() (abipy.flowtk.tasks.SigmaTask property) SigresFile (class in abipy.electrons.gw) SigresRobot (class in abipy.electrons.gw) single_shot() (abipy.flowtk.flows.Flow method) (abipy.flowtk.launcher.PyLauncher method) site_pairs_partial() (abipy.electrons.lobster.CoxpFile property)

site_pairs_total() (abipy.electrons.lobster.CoxpFile property) site_symmetries (abipy.core.structure.Structure attribute) SiteSymmetries (class in abipy.core.site_symmetries) size_slider() (in module abipy.display.utils) sizing_mode_select() (in module abipy.panels.core) skb (abipy.eph.sigeph.QpTempState attribute) skb() (abipy.electrons.gw.QPState property) skb_iter() (abipy.electrons.ebands.ElectronBands method) skip_if_abinit_not_ge() (abipy.core.testing.AbipyTest method) skip_if_not_bolztrap2() (abipy.core.testing.AbipyTest static method) skip_if_not_executable() (abipy.core.testing.AbipyTest method) skip_if_not_phonopy() (abipy.core.testing.AbipyTest static method) skip_if_not_pseudodojo() (abipy.core.testing.AbipyTest static method) SkwInterpolator (class in abipy.core.skw) slurm_parse_timestr() (in module abipy.flowtk.qutils) SlurmJob (class in abipy.flowtk.qjobs) SmearingDecorator (class in abipy.abio.decorators) smooth() (in module abipy.tools.numtools) software_stack() (in module abipy.abilab) sort_and_groupby() (in module abipy.tools.numtools) sort_by_e0() (abipy.eph.sigeph.QpTempList method) sort_by_efficiency() (abipy.flowtk.tasks.ParalHints method) sort_by_mem_per_proc() (abipy.flowtk.tasks.ParalHints method) sort_by_speedup() (abipy.flowtk.tasks.ParalHints method) sortby() (abipy.abio.robots.Robot method) sortby_label() (abipy.abio.robots.Robot static method) SoundVelocity (class in abipy.dfpt.vsound) spacing() (abipy.electrons.ebands.ElectronBands method) SparseHistogram (class in abipy.flowtk.utils) SpectatorError (abipy.flowtk.nodes.Node attribute) SpectatorNodeError spell_check() (abipy.abio.inputs.AbinitInput property) (abipy.abio.inputs.AnaddbInput property) (abipy.wannier90.win.Wannier90Input property) spget_equivalent_atoms() (abipy.core.structure.Structure method) spget_lattice_type() (abipy.core.structure.Structure method) spget_site_symmetries() (abipy.core.structure.Structure method) spget_summary() (abipy.core.structure.Structure method) spglib_angtol (abipy.panels.structure.StructurePanel attribute) spglib_summary() (abipy.panels.structure.StructurePanel method) spglib_symprec (abipy.panels.structure.StructurePanel attribute) spgset_abi_spacegroup() (abipy.core.structure.Structure method) spin2tex (abipy.electrons.fatbands.FatBandsFile attribute) spin_mode (abipy.panels.structure.StructurePanel attribute) SpinDecorator (class in abipy.abio.decorators) spinors2color (abipy.electrons.fatbands.FatBandsFile attribute) spinors2tex (abipy.electrons.fatbands.FatBandsFile attribute) spins() (abipy.electrons.ebands.ElectronBands property) spline (abipy.core.func1d.Function1D attribute) spline_derivatives() (abipy.core.func1d.Function1D method) spline_int_jlqr() (in module abipy.tools.bessel) spline_integral() (abipy.core.func1d.Function1D method) spline_on_mesh() (abipy.core.func1d.Function1D method) spline_roots() (abipy.core.func1d.Function1D property) split_datasets() (abipy.abio.inputs.MultiDataset method) split_dwdq (abipy.dfpt.gruneisen.GrunsNcFile attribute) split_gruns (abipy.dfpt.gruneisen.GrunsNcFile attribute) split_gruns_finite_differences (abipy.dfpt.gruneisen.GrunsNcFile attribute) split_matched_indices() (abipy.dfpt.phonons.PhononBands property) split_phdispl_cart() (abipy.dfpt.phonons.PhononBands property) split_phfreqs() (abipy.dfpt.phonons.PhononBands property) split_qpoints() (abipy.dfpt.phonons.PhononBands property) start (abipy.abio.robots.Robot attribute) start() (abipy.flowtk.launcher.PyFlowScheduler method) (abipy.flowtk.mocks.AbinitTaskMockedStart method) (abipy.flowtk.works.Work method) statdiff() (abipy.electrons.ebands.ElectronBands method) Status (class in abipy.flowtk.nodes) status() (abipy.flowtk.flows.Flow property) (abipy.flowtk.nodes.Dependency property) (abipy.flowtk.nodes.FileNode property) (abipy.flowtk.nodes.Node property) (abipy.flowtk.works.Work property) status_btn (abipy.panels.flows.FlowPanel attribute) status_counter() (abipy.flowtk.flows.Flow property) (abipy.flowtk.works.Work property) steps (abipy.dynamics.hist.HistFile attribute) str2bool_or_none() (in module abipy.display.utils) str_deps() (abipy.flowtk.nodes.Node method) straceback() (abipy.core.testing.AbipyTest static method) Stress (class in abipy.tools.tensors) structure (abipy.abio.abivars.AbinitInputFile attribute) (abipy.dfpt.anaddbnc.AnaddbNcFile attribute), [1] (abipy.dfpt.phonons.PhdosFile attribute) (abipy.dfpt.phonons.PhdosReader attribute) (abipy.electrons.bse.MdfFile attribute) (abipy.eph.v1sym.V1symFile attribute) (abipy.eph.wr.WrNcFile attribute) Structure (class in abipy.core.structure) structure() (abipy.abio.inputs.AbinitInput property) (abipy.abio.inputs.AnaddbInput property) (abipy.core.mixins.Has_Structure property) (abipy.core.site_symmetries.SiteSymmetries property) (abipy.dfpt.ddb.Becs property) (abipy.dfpt.ddb.DdbFile property) (abipy.dfpt.ddb.DielectricTensorGenerator property) (abipy.dfpt.elastic.ElasticData property) (abipy.dfpt.gruneisen.GrunsNcFile property) (abipy.dfpt.ifc.InteratomicForceConstants property) (abipy.dfpt.msqdos.MsqDos property) (abipy.dfpt.phonons.PhbstFile property) (abipy.dfpt.phtk.NonAnalyticalPh property) (abipy.dfpt.vsound.SoundVelocity property) (abipy.electrons.bse.MdfReader property) (abipy.electrons.ebands.ElectronBands property) (abipy.electrons.effmass_analyzer.EffMassAnalyzer property) (abipy.electrons.eskw.EskwFile property) (abipy.electrons.fatbands.FatBandsFile property) (abipy.electrons.fold2bloch.Fold2BlochNcfile property) (abipy.electrons.gsr.GsrFile property) (abipy.electrons.gw.SigresFile property) (abipy.electrons.optic.OpticNcFile property) (abipy.electrons.scr.ScrFile property) (abipy.eph.a2f.A2fFile property) (abipy.eph.sigeph.SigEPhFile property) (abipy.eph.transportfile.TransportFile property) (abipy.wannier90.abiwan.AbiwanFile property) (abipy.wannier90.win.Wannier90Input property) (abipy.wannier90.wout.WoutFile property) (abipy.waves.wfkfile.WfkFile property) structure2wannier90() (in module abipy.wannier90.win) structure_dataframes (abipy.core.restapi.DatabaseStructures attribute) structure_from_atoms() (in module abipy.flowtk.abiphonopy) structure_from_ucell() (in module abipy.data) StructurePanel (class in abipy.panels.structure) structures (abipy.dfpt.gruneisen.GrunsNcFile attribute) (abipy.dynamics.hist.HistFile attribute) structures_btn (abipy.panels.flows.FlowPanel attribute) structures_io_checkbox (abipy.panels.flows.FlowPanel attribute) subclass_from_name() (abipy.core.kpoints.KpointList class method) submit_tasks() (abipy.flowtk.works.Work method) sum_weights() (abipy.core.kpoints.KpointList method) summarize() (abipy.electrons.effmass_analyzer.EffMassAnalyzer method) sumrule() (abipy.dfpt.ddb.Becs property) support_ext() (abipy.iotools.visualizer.Visualizer class method) supported_extensions() (abipy.iotools.visualizer.Visualizer class method) supports_fermi_surface (abipy.electrons.ebands.ElectronBands attribute) symafm() (abipy.core.symmetries.AbinitSpaceGroup property) symbols_by_typat() (abipy.flowtk.abiobjects.LdauParams property) (abipy.flowtk.abiobjects.LexxParams property) symeq() (abipy.core.symmetries.AbinitSpaceGroup method) symlink_abiext() (abipy.flowtk.utils.Directory method) symmops() (abipy.core.symmetries.AbinitSpaceGroup method) symprec (abipy.core.skw.ElectronInterpolator attribute) symrec() (abipy.core.symmetries.AbinitSpaceGroup property) symrel() (abipy.core.symmetries.AbinitSpaceGroup property)

T

TaskManager (class in abipy.flowtk.tasks) tasks_from_nids() (abipy.flowtk.flows.Flow method) TdepElectronBands (class in abipy.eph.sigeph) temp_range (abipy.panels.ddb.DdbFilePanel attribute) temp_shell_task() (abipy.flowtk.tasks.AbinitTask class method) (abipy.flowtk.tasks.AnaddbTask class method) temporary_flow() (abipy.flowtk.flows.Flow class method) tensor_at_frequency() (abipy.dfpt.ddb.DielectricTensorGenerator method) TENSOR_META (abipy.dfpt.elastic.ElasticData attribute) tests_with_fftalg() (abipy.tools.fftprof.FFTBenchmark method) thermal_conductivity_slack() (abipy.dfpt.gruneisen.GrunsNcFile method) (in module abipy.dfpt.gruneisen) time2loadlever() (in module abipy.flowtk.qutils) time2pbspro() (in module abipy.flowtk.qutils) time2slurm() (in module abipy.flowtk.qutils) timeit() (in module abipy.tools.decorators) timelimit_parser() (in module abipy.flowtk.qutils) timeout() (abipy.flowtk.qjobs.QueueJob property) TIPS() (abipy.electrons.gw.QPState class method) tips() (abipy.electrons.gw.QPState property) tmesh() (abipy.eph.sigeph.QpTempList property) (abipy.eph.sigeph.SigEPhFile property) tmpfileindir() (abipy.core.testing.AbipyTest static method) tnons() (abipy.core.symmetries.AbinitSpaceGroup property) to() (abipy.core.structure.Structure method) to_abivars() (abipy.core.structure.Structure method) (abipy.flowtk.abiobjects.LdauParams method) (abipy.flowtk.abiobjects.LexxParams method) to_array() (abipy.core.kpoints.KpointList method) to_ase_atoms() (abipy.core.structure.Structure method) to_bxsf() (abipy.electrons.ebands.ElectronBands method) to_chgcar() (abipy.core.fields.Density method) to_dataframe() (abipy.dfpt.gruneisen.GrunsNcFile method) (abipy.electrons.gw.SigresFile method) to_dict() (abipy.flowtk.flows.Flow method) to_file() (abipy.core.func1d.Function1D method) to_json() (abipy.core.kpoints.KpointList method) (abipy.electrons.ebands.ElectronBands method) to_pymatgen() (abipy.dfpt.phonons.PhdosFile method) (abipy.dfpt.phonons.PhononBands method) (abipy.dfpt.phonons.PhononDos method) (abipy.electrons.ebands.ElectronBands method) to_shell_manager() (abipy.flowtk.tasks.TaskManager method) to_strdict() (abipy.electrons.gw.QPState method) to_string() (abipy.abio.abivars.AbinitInputFile method) (abipy.abio.inputs.AbinitInput method) (abipy.abio.inputs.AbstractInput method) (abipy.abio.inputs.AnaddbInput method) (abipy.abio.inputs.Cut3DInput method) (abipy.abio.inputs.MultiDataset method) (abipy.abio.inputs.OpticInput method) (abipy.abio.outputs.AbinitLogFile method) (abipy.abio.outputs.AbinitOutputFile method) (abipy.abio.robots.Robot method) (abipy.core.gsphere.GSphere method) (abipy.core.kpoints.IrredZone method) (abipy.core.kpoints.Kpath method) (abipy.core.kpoints.Kpoint method) (abipy.core.kpoints.KpointList method) (abipy.core.kpoints.Ktables method) (abipy.core.mesh3d.Mesh3D method) (abipy.core.site_symmetries.SiteSymmetries method) (abipy.core.skw.SkwInterpolator method) (abipy.core.structure.Structure method) (abipy.core.symmetries.AbinitSpaceGroup method) (abipy.dfpt.anaddbnc.AnaddbNcFile method) (abipy.dfpt.ddb.Becs method) (abipy.dfpt.ddb.DdbFile method) (abipy.dfpt.ddb.DielectricTensorGenerator method) (abipy.dfpt.elastic.ElasticData method) (abipy.dfpt.gruneisen.GrunsNcFile method) (abipy.dfpt.ifc.InteratomicForceConstants method) (abipy.dfpt.msqdos.MsqDos method) (abipy.dfpt.phonons.PhbstFile method) (abipy.dfpt.phonons.PhdosFile method) (abipy.dfpt.phonons.PhononBands method) (abipy.dfpt.phonons.PhononBandsPlotter method) (abipy.dynamics.hist.HistFile method) (abipy.dynamics.hist.HistRobot method) (abipy.electrons.bse.DielectricFunction method) (abipy.electrons.bse.MdfFile method) (abipy.electrons.bse.MultipleMdfPlotter method) (abipy.electrons.denpot.DensityNcFile method) (abipy.electrons.ebands.ElectronBands method) (abipy.electrons.ebands.ElectronBandsPlotter method) (abipy.electrons.ebands.ElectronDos method) (abipy.electrons.effmass_analyzer.EffMassAnalyzer method) (abipy.electrons.effmass_analyzer.Segment method) (abipy.electrons.eskw.EskwFile method) (abipy.electrons.fatbands.FatBandsFile method) (abipy.electrons.fold2bloch.Fold2BlochNcfile method) (abipy.electrons.gsr.GsrFile method) (abipy.electrons.gw.SigresFile method) (abipy.electrons.lobster.CoxpFile method) (abipy.electrons.lobster.ICoxpFile method) (abipy.electrons.lobster.LobsterAnalyzer method) (abipy.electrons.lobster.LobsterDoscarFile method) (abipy.electrons.lobster.LobsterInput method) (abipy.electrons.optic.OpticNcFile method) (abipy.electrons.scr.ScrFile method) (abipy.eph.a2f.A2f method) (abipy.eph.a2f.A2fFile method) (abipy.eph.sigeph.EphSelfEnergy method) (abipy.eph.sigeph.QpTempList method) (abipy.eph.sigeph.QpTempState method) (abipy.eph.sigeph.SigEPhFile method) (abipy.eph.sigeph.TdepElectronBands method) (abipy.eph.transportfile.TransportFile method) (abipy.eph.v1sym.V1symFile method) (abipy.eph.wr.WrNcFile method) (abipy.flowtk.nodes.NodeHistory method) (abipy.tools.plotting.GenericDataFilePlotter method) (abipy.tools.plotting.GenericDataFilesPlotter method) (abipy.wannier90.abiwan.AbiwanFile method) (abipy.wannier90.win.Wannier90Input method) (abipy.wannier90.wout.WoutFile method) (abipy.waves.wfkfile.WfkFile method)

to_xdatcar() (abipy.dynamics.hist.HistFile method) to_xmgrace() (abipy.dfpt.phonons.PhononBands method) (abipy.electrons.ebands.ElectronBands method) tofftmesh() (abipy.core.gsphere.GSphere method) tonumber() (in module abipy.tools.text) torange() (in module abipy.tools.duck) TorqueJob (class in abipy.flowtk.qjobs) tos() (abipy.core.kpoints.Kpoint method) tot() (abipy.dfpt.raman.PowderIntensity property) total (abipy.electrons.lobster.CoxpFile attribute) total_dos (abipy.electrons.lobster.LobsterDoscarFile attribute) total_energy (abipy.dfpt.ddb.DdbFile attribute) total_rhog (abipy.core.fields.Density attribute) total_rhor (abipy.core.fields.Density attribute) total_rhor_as_density() (abipy.core.fields.Density method) trace (abipy.core.symmetries.LatticeRotation attribute) TransportFile (class in abipy.eph.transportfile) transpose_last3dims() (in module abipy.tools.numtools) trim_paths() (abipy.abio.robots.Robot method) tsmear (abipy.core.mixins.Has_ElectronBands attribute) TYPE2NAMES (abipy.dfpt.elastic.ElasticData attribute) type_of_index (abipy.electrons.lobster.CoxpFile attribute) (abipy.electrons.lobster.ICoxpFile attribute)

U

uf_eigens (abipy.electrons.fold2bloch.Fold2BlochNcfile attribute) uf_weights (abipy.electrons.fold2bloch.Fold2BlochNcfile attribute) unconverged_tasks() (abipy.flowtk.flows.Flow property) units (abipy.panels.ddb.DdbFilePanel attribute) units() (abipy.abio.variable.InputVariable property) unknown_status() (abipy.flowtk.qjobs.QueueJob property) up_minus_down (abipy.electrons.ebands.ElectronDos attribute) update_collection() (abipy.flowtk.nodes.NodeResults method)

url() (abipy.abio.inputs.OpticVar property) use_cache (abipy.core.skw.ElectronInterpolator attribute) use_smartio() (abipy.flowtk.flows.Flow method) USER_CONFIG_DIR (abipy.flowtk.launcher.PyFlowScheduler attribute) (abipy.flowtk.tasks.TaskManager attribute) user_wants_to_exit() (abipy.flowtk.utils.Editor static method) uses_ktimereversal() (abipy.abio.inputs.AbinitInput property) uses_paral_kgb() (abipy.flowtk.tasks.AbinitTask method)

V

V1symFile (class in abipy.eph.v1sym) val_ib() (abipy.core.skw.ElectronInterpolator property) valence_electrons_per_atom() (abipy.abio.inputs.AbinitInput property) (abipy.core.structure.Structure method) validate_json_schema() (abipy.flowtk.flows.Flow method) (abipy.flowtk.nodes.NodeResults method) validate_output_parser() (in module abipy.abio.outputs) values (abipy.electrons.lobster.ICoxpFile attribute) values() (abipy.core.func1d.Function1D property) (abipy.electrons.psps.VnlProjector property) variable_checksum() (abipy.abio.inputs.AbinitInput method) varname_dtindex() (abipy.abio.abivars.AbinitInputParser static method) vars() (abipy.abio.inputs.AbinitInput property) (abipy.abio.inputs.AbstractInput property) (abipy.abio.inputs.AnaddbInput property) (abipy.abio.inputs.OpticInput property) (abipy.wannier90.win.Wannier90Input property) vars_btn (abipy.panels.flows.FlowPanel attribute) vars_text (abipy.panels.flows.FlowPanel attribute) verbose (abipy.abio.abivars.AbinitInputParser attribute) (abipy.panels.core.AbipyParameterized attribute) (abipy.panels.ddb.DdbFilePanel attribute) (abipy.panels.flows.FlowPanel attribute) (abipy.panels.structure.StructurePanel attribute) VERSION (abipy.flowtk.flows.Flow attribute) version (abipy.flowtk.tasks.AbinitBuild attribute) version() (abipy.dfpt.ddb.DdbFile property) version_ge() (abipy.flowtk.tasks.AbinitBuild method)

versor() (abipy.core.kpoints.Kpoint method) versors (abipy.core.kpoints.Kpath attribute) vesta_open() (abipy.dfpt.msqdos.MsqDos method) vh (abipy.electrons.denpot.VhartreeNcFile attribute) VhartreeNcFile (class in abipy.electrons.denpot) VhartreePotential (class in abipy.core.fields) vhxc (abipy.electrons.denpot.VhxcNcFile attribute) VhxcNcFile (class in abipy.electrons.denpot) VhxcPotential (class in abipy.core.fields) view() (abipy.panels.structure.StructurePanel method) view_phononwebsite() (abipy.dfpt.ddb.DdbFile method) (abipy.dfpt.phonons.PhononBands method) viewer (abipy.panels.structure.StructurePanel attribute) viewer_btn (abipy.panels.structure.StructurePanel attribute) visualize() (abipy.core.structure.Structure method) (abipy.dynamics.hist.HistFile method) visualize_structure_with() (abipy.core.mixins.Has_Structure method) visualize_ur2() (abipy.waves.pwwave.PWWaveFunction method) (abipy.waves.wfkfile.WfkFile method) Visualizer (class in abipy.iotools.visualizer) vks (abipy.electrons.denpot.PotNcFile attribute) VksPotential (class in abipy.core.fields) VnlProjector (class in abipy.electrons.psps) volume_animate() (abipy.display.mvtk.MayaviFieldAnimator method) volumes (abipy.dfpt.gruneisen.GrunsNcFile attribute) vxc (abipy.electrons.denpot.VxcNcFile attribute) VxcNcFile (class in abipy.electrons.denpot) VxcPotential (class in abipy.core.fields)

W

w_range (abipy.panels.ddb.DdbFilePanel attribute) wal_sbk (abipy.electrons.fatbands.FatBandsFile attribute) walm_sbk (abipy.electrons.fatbands.FatBandsFile attribute) wann_centers (abipy.wannier90.abiwan.AbiwanFile attribute) wann_spreads (abipy.wannier90.abiwan.AbiwanFile attribute) Wannier90Input (class in abipy.wannier90.win) warning() (abipy.flowtk.nodes.NodeHistory method) weight() (abipy.core.kpoints.Kpoint property) weights (abipy.core.kpoints.Ktables attribute) weights() (abipy.core.kpoints.KpointList property) wfk_filepath() (abipy.flowtk.tasks.OpticTask property) WfkFile (class in abipy.waves.wfkfile) what_list() (abipy.dynamics.hist.HistRobot property) which() (abipy.core.testing.AbipyTest static method) widget2py() (in module abipy.display.utils) with_gaps (abipy.panels.core.PanelWithElectronBands attribute) with_points_along_path() (abipy.electrons.ebands.ElectronBands method) wlabel_from_units() (in module abipy.core.abinit_units) wmesh (abipy.dfpt.phonons.PhdosReader attribute) (abipy.electrons.bse.MdfReader attribute) (abipy.electrons.optic.OpticNcFile attribute) Work (class in abipy.flowtk.works) works() (abipy.flowtk.flows.Flow property) WoutFile (class in abipy.wannier90.wout) wpoints() (abipy.electrons.scr.ScrFile property) wrap_to_bz() (abipy.core.kpoints.Kpoint method) (in module abipy.core.kpoints) wrap_to_ws() (abipy.core.kpoints.Kpoint method) (in module abipy.core.kpoints) write() (abipy.abio.inputs.AbstractInput method) (abipy.abio.inputs.Cut3DInput method) (abipy.abio.inputs.MultiDataset method) (abipy.dfpt.ddb.DdbFile method) (abipy.electrons.lobster.LobsterInput method) (abipy.flowtk.utils.File method) write_chgcar() (abipy.electrons.denpot.DensityNcFile method) write_cif_file() (abipy.dfpt.msqdos.MsqDos method) write_cube() (abipy.electrons.denpot.DensityNcFile method) write_jobfile() (abipy.flowtk.tasks.TaskManager method) write_notebook() (abipy.abio.abivars.AbinitInputFile method) (abipy.abio.outputs.AbinitLogFile method) (abipy.abio.outputs.AbinitOutputFile method) (abipy.abio.outputs.AboRobot method) (abipy.abio.timer.AbinitTimerParser method) (abipy.core.mixins.NotebookWriter method) (abipy.core.restapi.DatabaseStructures method) (abipy.core.structure.Structure method) (abipy.dfpt.anaddbnc.AnaddbNcFile method) (abipy.dfpt.anaddbnc.AnaddbNcRobot method) (abipy.dfpt.ddb.DdbFile method) (abipy.dfpt.ddb.DdbRobot method) (abipy.dfpt.gruneisen.GrunsNcFile method) (abipy.dfpt.phonons.PhbstFile method) (abipy.dfpt.phonons.PhdosFile method) (abipy.dfpt.phonons.PhononBandsPlotter method) (abipy.dfpt.phonons.PhononDosPlotter method) (abipy.dfpt.vsound.SoundVelocity method) (abipy.dynamics.hist.HistFile method) (abipy.dynamics.hist.HistRobot method) (abipy.electrons.bse.MdfFile method) (abipy.electrons.ebands.ElectronBandsPlotter method) (abipy.electrons.ebands.ElectronDosPlotter method) (abipy.electrons.eskw.EskwFile method) (abipy.electrons.fatbands.FatBandsFile method) (abipy.electrons.fold2bloch.Fold2BlochNcfile method) (abipy.electrons.gsr.GsrFile method) (abipy.electrons.gw.SigresFile method) (abipy.electrons.gw.SigresRobot method) (abipy.electrons.lobster.CoxpFile method) (abipy.electrons.lobster.ICoxpFile method) (abipy.electrons.lobster.LobsterAnalyzer method) (abipy.electrons.lobster.LobsterDoscarFile method) (abipy.electrons.optic.OpticNcFile method) (abipy.electrons.optic.OpticRobot method) (abipy.electrons.scr.ScrFile method) (abipy.eph.a2f.A2fFile method) (abipy.eph.a2f.A2fRobot method) (abipy.eph.sigeph.SigEPhFile method) (abipy.eph.sigeph.SigEPhRobot method) (abipy.eph.transportfile.TransportFile method) (abipy.eph.v1sym.V1symFile method) (abipy.eph.wr.WrNcFile method) (abipy.wannier90.abiwan.AbiwanFile method) (abipy.wannier90.abiwan.AbiwanRobot method) (abipy.wannier90.wout.WoutFile method) (abipy.waves.wfkfile.WfkFile method)

write_open_notebook() (abipy.flowtk.flows.Flow method) write_phonopy_qha_inputs() (abipy.dfpt.qha.AbstractQHA method) write_vib_file() (abipy.core.structure.Structure method) write_xdatcar() (abipy.dynamics.hist.HistFile method) write_xsf() (abipy.electrons.denpot.DensityNcFile method) writelines() (abipy.flowtk.utils.File method) WrNcFile (class in abipy.eph.wr) wti_from_nids() (abipy.flowtk.flows.Flow method) wvols_qibz (abipy.dfpt.gruneisen.GrunsNcFile attribute)

X

xc (abipy.electrons.gsr.GsrFile attribute) XcDecorator (class in abipy.abio.decorators)

xsf_write_data() (in module abipy.iotools.xsf) xsf_write_structure() (in module abipy.iotools.xsf) xsf_write_structure_and_data_to_path() (in module abipy.iotools.xsf)

Y

YAML_FILE (abipy.flowtk.launcher.PyFlowScheduler attribute) (abipy.flowtk.tasks.TaskManager attribute) yaml_tag (abipy.flowtk.events.DilatmxError attribute) (abipy.flowtk.events.NscfConvergenceWarning attribute) (abipy.flowtk.events.RelaxConvergenceWarning attribute) (abipy.flowtk.events.ScfConvergenceWarning attribute) yield_ebands_figs() (abipy.core.mixins.Has_ElectronBands method) yield_figs() (abipy.abio.abivars.AbinitInputFile method) (abipy.abio.outputs.AbinitLogFile method) (abipy.abio.outputs.AbinitOutputFile method) (abipy.abio.outputs.AboRobot method) (abipy.abio.timer.AbinitTimerParser method) (abipy.core.mixins.NotebookWriter method) (abipy.core.restapi.DatabaseStructures method) (abipy.core.structure.Structure method) (abipy.dfpt.anaddbnc.AnaddbNcFile method) (abipy.dfpt.anaddbnc.AnaddbNcRobot method) (abipy.dfpt.ddb.DdbFile method) (abipy.dfpt.ddb.DdbRobot method) (abipy.dfpt.gruneisen.GrunsNcFile method) (abipy.dfpt.phonons.PhbstFile method) (abipy.dfpt.phonons.PhdosFile method) (abipy.dfpt.phonons.PhononBandsPlotter method) (abipy.dfpt.phonons.PhononDosPlotter method) (abipy.dfpt.vsound.SoundVelocity method) (abipy.dynamics.hist.HistFile method) (abipy.dynamics.hist.HistRobot method) (abipy.electrons.bse.MdfFile method) (abipy.electrons.ebands.ElectronBandsPlotter method) (abipy.electrons.ebands.ElectronDosPlotter method) (abipy.electrons.eskw.EskwFile method) (abipy.electrons.fatbands.FatBandsFile method) (abipy.electrons.fold2bloch.Fold2BlochNcfile method) (abipy.electrons.gsr.GsrFile method) (abipy.electrons.gw.SigresFile method) (abipy.electrons.gw.SigresRobot method) (abipy.electrons.lobster.CoxpFile method) (abipy.electrons.lobster.ICoxpFile method) (abipy.electrons.lobster.LobsterAnalyzer method) (abipy.electrons.lobster.LobsterDoscarFile method) (abipy.electrons.optic.OpticNcFile method) (abipy.electrons.optic.OpticRobot method) (abipy.electrons.scr.ScrFile method) (abipy.eph.a2f.A2fFile method) (abipy.eph.a2f.A2fRobot method) (abipy.eph.sigeph.SigEPhFile method) (abipy.eph.sigeph.SigEPhRobot method) (abipy.eph.transportfile.TransportFile method) (abipy.eph.v1sym.V1symFile method) (abipy.eph.wr.WrNcFile method) (abipy.wannier90.abiwan.AbiwanFile method) (abipy.wannier90.abiwan.AbiwanRobot method) (abipy.wannier90.wout.WoutFile method) (abipy.waves.wfkfile.WfkFile method)

yield_phbands_figs() (abipy.core.mixins.Has_PhononBands method) yield_structure_figs() (abipy.core.mixins.Has_Structure method)

Z

Z (abipy.electrons.effmass_analyzer.Segment attribute) zero_point_energy (abipy.dfpt.phonons.PhononDos attribute) zeros() (abipy.core.gsphere.GSphere method) (abipy.core.mesh3d.Mesh3D method)

zeta (abipy.core.fields.Density attribute) zincblende() (abipy.core.structure.Structure class method) ZstarTensor (class in abipy.tools.tensors)