Index

A

A2f (class in abipy.eph.a2f) a2f_qcoarse (abipy.eph.a2f.A2fFile property) a2f_qintp (abipy.eph.a2f.A2fFile property) A2fFile (class in abipy.eph.a2f) A2fFilePanel (class in abipy.panels.a2f) A2fReader (class in abipy.eph.a2f) A2fRobot (class in abipy.eph.a2f) A2Ftr (class in abipy.eph.a2f) a2ftr_qcoarse (abipy.eph.a2f.A2fFile property) a2ftr_qintp (abipy.eph.a2f.A2fFile property) A_hw() (abipy.lumi.deltaSCF.DeltaSCF method) (abipy.lumi.lineshape.Lineshape method) A_hw_help() (in module abipy.lumi.utils_lumi) a_kn (abipy.eph.vpq.Polaron property) abi_extensions() (in module abipy.flowtk.utils) abi_primitive() (abipy.core.structure.Structure method) abi_relax_atoms() (abipy.ml.ml_relax.RelaxationProfiler method) abi_relax_atoms_with_ase() (abipy.ml.ml_relax.RelaxationProfiler method) abi_sanitize (abipy.panels.structure.InputFileGenerator attribute) abi_sanitize() (abipy.core.structure.Structure method) abi_spacegroup (abipy.core.structure.Structure property) abi_splitext() (in module abipy.flowtk.utils) abi_string (abipy.core.structure.Structure property) AbiAbstractInput (class in abipy.abio.inputs) abicheck() (in module abipy.abilab) abicomp_a2f() (in module abipy.scripts.abicomp) abicomp_abiwan() (in module abipy.scripts.abicomp) abicomp_abiwan_ebands() (in module abipy.scripts.abicomp) abicomp_anaddb() (in module abipy.scripts.abicomp) abicomp_cod_structure() (in module abipy.scripts.abicomp) abicomp_data() (in module abipy.scripts.abicomp) abicomp_ddb() (in module abipy.scripts.abicomp) abicomp_dfpt2_scf() (in module abipy.scripts.abicomp) abicomp_ebands() (in module abipy.scripts.abicomp) abicomp_edos() (in module abipy.scripts.abicomp) abicomp_getattr() (in module abipy.scripts.abicomp) abicomp_gkq() (in module abipy.scripts.abicomp) abicomp_gs_scf() (in module abipy.scripts.abicomp) abicomp_gsr() (in module abipy.scripts.abicomp) abicomp_gwr() (in module abipy.scripts.abicomp) abicomp_hist() (in module abipy.scripts.abicomp) abicomp_mdf() (in module abipy.scripts.abicomp) abicomp_mp_structure() (in module abipy.scripts.abicomp) abicomp_optic() (in module abipy.scripts.abicomp) abicomp_phbands() (in module abipy.scripts.abicomp) abicomp_phbst() (in module abipy.scripts.abicomp) abicomp_phdos() (in module abipy.scripts.abicomp) abicomp_png() (in module abipy.scripts.abicomp) abicomp_pseudos() (in module abipy.scripts.abicomp) abicomp_psps() (in module abipy.scripts.abicomp) abicomp_rta() (in module abipy.scripts.abicomp) abicomp_sigeph() (in module abipy.scripts.abicomp) abicomp_sigres() (in module abipy.scripts.abicomp) abicomp_skw_ibz_kpath() (in module abipy.scripts.abicomp) abicomp_spg() (in module abipy.scripts.abicomp) abicomp_structure() (in module abipy.scripts.abicomp) abicomp_text() (in module abipy.scripts.abicomp) abicomp_time() (in module abipy.scripts.abicomp) abicomp_v1qavg() (in module abipy.scripts.abicomp) abicomp_xrd() (in module abipy.scripts.abicomp) abifile_subclass_from_filename() (in module abipy.abilab) abifiles (abipy.abio.robots.Robot property) abiget_autoparal_pconfs() (abipy.abio.inputs.AbinitInput method) abiget_dims_spginfo() (abipy.abio.inputs.AbinitInput method) abiget_dryrun_task() (abipy.abio.inputs.AbinitInput method) abiget_ibz() (abipy.abio.inputs.AbinitInput method) abiget_irred_ddeperts() (abipy.abio.inputs.AbinitInput method) abiget_irred_dteperts() (abipy.abio.inputs.AbinitInput method) abiget_irred_phperts() (abipy.abio.inputs.AbinitInput method) abiget_irred_strainperts() (abipy.abio.inputs.AbinitInput method) abiget_scr_ibz() (abipy.abio.inputs.AbinitInput method) abiget_spacegroup() (abipy.abio.inputs.AbinitInput method) abiget_spginfo() (abipy.core.structure.Structure method) abinb_mkstemp() (in module abipy.core.globals) abinit_build (abipy.flowtk.tasks.TaskManager property) abinit_help() (in module abipy.abio.abivars_db) abinit_run_gs_atoms() (abipy.ml.ml_relax.RelaxationProfiler method) abinit_to_phonopy() (in module abipy.dfpt.converters) abinit_version (abipy.core.mixins.AbinitNcFile property) AbinitBuild (class in abipy.flowtk.tasks) AbinitInput (class in abipy.abio.inputs) AbinitInputDecorator (class in abipy.abio.decorators) AbinitInputError AbinitInputFile (class in abipy.abio.abivars) AbinitInputParser (class in abipy.abio.abivars) AbinitLogFile (class in abipy.abio.outputs) AbinitNcFile (class in abipy.core.mixins) AbinitOutputFile (class in abipy.abio.outputs) AbinitOutputFilePanel (class in abipy.panels.outputs) AbinitOutputFilePanelWithFileInput (class in abipy.panels.outputs) AbinitSpaceGroup (class in abipy.core.symmetries) AbinitTask (class in abipy.flowtk.tasks) AbinitTaskMockedStart (class in abipy.flowtk.mocks) AbinitTextFile (class in abipy.abio.outputs) AbinitTimerParser (class in abipy.abio.timer) abinp_abispg() (in module abipy.scripts.abinp) abinp_anaph() (in module abipy.scripts.abinp) abinp_autoparal() (in module abipy.scripts.abinp) abinp_ebands() (in module abipy.scripts.abinp) abinp_g0w0() (in module abipy.scripts.abinp) abinp_gs() (in module abipy.scripts.abinp) abinp_ibz() (in module abipy.scripts.abinp) abinp_lobster() (in module abipy.scripts.abinp) abinp_phonons() (in module abipy.scripts.abinp) abinp_phperts() (in module abipy.scripts.abinp) abinp_slurm() (in module abipy.scripts.abinp) abinp_validate() (in module abipy.scripts.abinp) abinp_vasp() (in module abipy.scripts.abinp) abinp_wannier90() (in module abipy.scripts.abinp) abiopen() (abipy.flowtk.nodes.FileNode method) (in module abipy.abilab) abiopen_ext2class_table() (in module abipy.abilab) abipanel() (in module abipy.abilab) (in module abipy.panels.core) abips_avail() (in module abipy.scripts.abips) abips_element() (in module abipy.scripts.abips) abips_install() (in module abipy.scripts.abips) abips_list() (in module abipy.scripts.abips) abips_mkff() (in module abipy.scripts.abips) abips_show() (in module abipy.scripts.abips) abipy module abipy.abilab module abipy.abio module abipy.abio.abivar_database module abipy.abio.abivar_database.variables module abipy.abio.abivar_database.variables_abinit module abipy.abio.abivar_database.variables_aim module abipy.abio.abivar_database.variables_anaddb module abipy.abio.abivar_database.variables_atdep module abipy.abio.abivar_database.variables_multibinit module abipy.abio.abivar_database.variables_optic module abipy.abio.abivars module abipy.abio.abivars_db module abipy.abio.decorators module abipy.abio.enums module abipy.abio.factories module abipy.abio.input_tags module abipy.abio.inputs module abipy.abio.outputs module abipy.abio.robots module abipy.abio.timer module abipy.abio.variable module abipy.core module abipy.core.abinit_units module abipy.core.atom module abipy.core.fields module abipy.core.func1d module abipy.core.globals module abipy.core.gsphere module abipy.core.irrepsdb module abipy.core.kpoints module abipy.core.mesh3d module abipy.core.mixins module abipy.core.pauli module abipy.core.perl module abipy.core.release module abipy.core.restapi module abipy.core.site_symmetries module abipy.core.skw module abipy.core.structure module abipy.core.symmetries module abipy.dfpt module abipy.dfpt.anaddbnc module abipy.dfpt.converters module abipy.dfpt.ddb module abipy.dfpt.deformation_utils module abipy.dfpt.elastic module abipy.dfpt.frozen_phonons module abipy.dfpt.gruneisen module abipy.dfpt.ifc module abipy.dfpt.msqdos module abipy.dfpt.phonons module abipy.dfpt.phtk module abipy.dfpt.qha module abipy.dfpt.qha_2D module abipy.dfpt.qha_general_stress module abipy.dfpt.raman module abipy.dfpt.vsound module abipy.dfpt.vzsisa module abipy.display module abipy.display.mvtk module abipy.display.utils module abipy.dynamics module abipy.dynamics.analyzer module abipy.dynamics.cpx module abipy.dynamics.hist module abipy.electrons module abipy.electrons.abitk module abipy.electrons.arpes module abipy.electrons.bse module abipy.electrons.charges module abipy.electrons.denpot module abipy.electrons.ebands module abipy.electrons.effmass_analyzer module abipy.electrons.eskw module abipy.electrons.fatbands module abipy.electrons.fold2bloch module abipy.electrons.gsr module abipy.electrons.gw module abipy.electrons.gwr module abipy.electrons.lobster module abipy.electrons.lruj module abipy.electrons.optic module abipy.electrons.orbmag module abipy.electrons.psps module abipy.electrons.scissors module abipy.electrons.scr module abipy.electrons.tchim module abipy.embedding module abipy.embedding.embedding_ifc module abipy.embedding.utils_ifc module abipy.eph module abipy.eph.a2f module abipy.eph.common module abipy.eph.cumulant module abipy.eph.eph_plotter module abipy.eph.gkq module abipy.eph.gpath module abipy.eph.gstore module abipy.eph.gwan module abipy.eph.rta module abipy.eph.sigeph module abipy.eph.transportfile module abipy.eph.v1qavg module abipy.eph.v1qnu module abipy.eph.v1sym module abipy.eph.vpq module abipy.eph.wr module abipy.flowtk module abipy.flowtk.abiinspect module abipy.flowtk.abiobjects module abipy.flowtk.abiphonopy module abipy.flowtk.abitimer module abipy.flowtk.dfpt_flows module abipy.flowtk.dfpt_works module abipy.flowtk.effmass_works module abipy.flowtk.eph_flows module abipy.flowtk.events module abipy.flowtk.finitediff module abipy.flowtk.flows module abipy.flowtk.gruneisen module abipy.flowtk.gs_works module abipy.flowtk.gw_works module abipy.flowtk.gwr_works module abipy.flowtk.launcher module abipy.flowtk.lumi_works module abipy.flowtk.mocks module abipy.flowtk.netcdf module abipy.flowtk.nodes module abipy.flowtk.pseudos module abipy.flowtk.psrepos module abipy.flowtk.qadapters module abipy.flowtk.qha_2d module abipy.flowtk.qjobs module abipy.flowtk.qutils module abipy.flowtk.scheduler_error_handlers module abipy.flowtk.scheduler_error_parsers module abipy.flowtk.tasks module abipy.flowtk.utils module abipy.flowtk.vzsisa module abipy.flowtk.works module abipy.flowtk.wrappers module abipy.flowtk.zsisa module abipy.iotools module abipy.iotools.cube module abipy.iotools.visualizer module abipy.iotools.xsf module abipy.lumi module abipy.lumi.deltaSCF module abipy.lumi.lineshape module abipy.lumi.utils_lumi module

abipy.ml module abipy.ml.aseml module abipy.ml.extxyz_generator module abipy.ml.ml_phonopy module abipy.ml.ml_relax module abipy.ml.relax_scanner module abipy.ml.tools module abipy.panels module abipy.panels.a2f module abipy.panels.core module abipy.panels.ddb module abipy.panels.electrons module abipy.panels.fatbands module abipy.panels.flows module abipy.panels.gsr module abipy.panels.hist module abipy.panels.nodes module abipy.panels.oncvpsp_gui module abipy.panels.outputs module abipy.panels.phonons module abipy.panels.sigeph module abipy.panels.structure module abipy.panels.tasks module abipy.panels.viewers module abipy.panels.works module abipy.ppcodes module abipy.ppcodes.base_parser module abipy.ppcodes.oncv_parser module abipy.ppcodes.oncv_plotter module abipy.ppcodes.ppgen module abipy.scripts module abipy.scripts.abicheck module abipy.scripts.abicomp module abipy.scripts.abidoc module abipy.scripts.abigui module abipy.scripts.abiml module abipy.scripts.abinp module abipy.scripts.abiopen module abipy.scripts.abips module abipy.scripts.abirun module abipy.scripts.abislurm module abipy.scripts.abistruct module abipy.scripts.abiview module abipy.scripts.oncv module abipy.tools module abipy.tools.bessel module abipy.tools.cli_parsers module abipy.tools.context_managers module abipy.tools.decorators module abipy.tools.derivatives module abipy.tools.devtools module abipy.tools.duck module abipy.tools.elate module abipy.tools.elate.elastic module abipy.tools.fftprof module abipy.tools.iotools module abipy.tools.notebooks module abipy.tools.numtools module abipy.tools.pade module abipy.tools.parallel module abipy.tools.plotting module abipy.tools.printing module abipy.tools.serialization module abipy.tools.tensors module abipy.tools.text module abipy.tools.typing module abipy.wannier90 module abipy.wannier90.abiwan module abipy.wannier90.win module abipy.wannier90.wout module abipy.waves module abipy.waves.pwwave module abipy.waves.wfkfile module abipy_logo1() (in module abipy.abilab) abipy_logo2() (in module abipy.abilab) abipy_logo3() (in module abipy.abilab) AbipyParameterized (class in abipy.panels.core) abirobot() (in module abipy.abilab) abisanitize_atoms() (in module abipy.ml.aseml) Abitk (class in abipy.flowtk.wrappers) abivalidate() (abipy.abio.inputs.AbiAbstractInput method) (abipy.abio.inputs.AbinitInput method) (abipy.abio.inputs.AnaddbInput method) (abipy.abio.inputs.AtdepInput method) (abipy.abio.inputs.OpticInput method) abivalidate_inputs() (abipy.flowtk.flows.Flow method) abiview_data() (in module abipy.scripts.abiview) abiview_ddb() (in module abipy.scripts.abiview) abiview_ddb_asr() (in module abipy.scripts.abiview) abiview_ddb_becs() (in module abipy.scripts.abiview) abiview_ddb_dipdip() (in module abipy.scripts.abiview) abiview_ddb_elastic() (in module abipy.scripts.abiview) abiview_ddb_ifc() (in module abipy.scripts.abiview) abiview_ddb_ir() (in module abipy.scripts.abiview) abiview_ddb_isodistort_ph() (in module abipy.scripts.abiview) abiview_ddb_qpt() (in module abipy.scripts.abiview) abiview_ddb_quad() (in module abipy.scripts.abiview) abiview_ddb_vs() (in module abipy.scripts.abiview) abiview_denpot() (in module abipy.scripts.abiview) abiview_dirviz() (in module abipy.scripts.abiview) abiview_ebands() (in module abipy.scripts.abiview) abiview_effmass() (in module abipy.scripts.abiview) abiview_fs() (in module abipy.scripts.abiview) abiview_hist() (in module abipy.scripts.abiview) abiview_ifermi_fs() (in module abipy.scripts.abiview) abiview_input() (in module abipy.scripts.abiview) abiview_lobster() (in module abipy.scripts.abiview) abiview_memlog() (in module abipy.scripts.abiview) abiview_phbands() (in module abipy.scripts.abiview) abiview_skw() (in module abipy.scripts.abiview) abiview_structure() (in module abipy.scripts.abiview) abiview_timer() (in module abipy.scripts.abiview) abiview_xrd_traj() (in module abipy.scripts.abiview) AbiwanFile (class in abipy.wannier90.abiwan) AbiwanReader (class in abipy.wannier90.abiwan) AbiwanRobot (class in abipy.wannier90.abiwan) ABO3() (abipy.core.structure.Structure class method) AboRobot (class in abipy.abio.outputs) abs() (abipy.core.func1d.Function1D method) AbstractError (class in abipy.flowtk.scheduler_error_parsers) AbstractErrorParser (class in abipy.flowtk.scheduler_error_parsers) AbstractInput (class in abipy.abio.inputs) AbstractQHA (class in abipy.dfpt.qha) AbstractQmeshAnalyzer (class in abipy.dfpt.qha) accepted_basis_sets (abipy.electrons.lobster.LobsterInput attribute) accoustic_sum() (in module abipy.embedding.utils_ifc) ace_theme (abipy.panels.oncvpsp_gui.OncvGui attribute) AceViewer (class in abipy.panels.viewers) acoustic_debye_temp (abipy.dfpt.gruneisen.GrunsNcFile property) acoustic_indices() (abipy.dfpt.phonons.PhononBands method) ActiveBar (class in abipy.panels.core) add_abiobjects() (abipy.abio.inputs.AbiAbstractInput method) add_array() (abipy.tools.plotting.ArrayPlotter method) add_arrays() (abipy.tools.plotting.ArrayPlotter method) add_basename_info() (abipy.ml.aseml.MlBase method) add_comment() (abipy.flowtk.launcher.ScriptEditor method) add_constraint_opts() (in module abipy.scripts.abiml) add_data_ddb() (in module abipy.dfpt.converters) add_deps() (abipy.flowtk.nodes.Node method) add_dirgap_span() (abipy.electrons.ebands.ElectronBands method) add_ebands() (abipy.electrons.ebands.ElectronBandsPlotter method) add_ebands_task_to_work() (abipy.flowtk.tasks.ScfTask method) add_edos() (abipy.electrons.ebands.ElectronDosPlotter method) add_emptyline() (abipy.flowtk.launcher.ScriptEditor method) add_entry() (abipy.core.restapi.DatabaseStructures method) add_entry_from_file() (abipy.dynamics.analyzer.ArrheniusPlotter method) add_error() (abipy.flowtk.tasks.ParalHintsParser method) add_expose_options_to_parser() (in module abipy.tools.cli_parsers) add_extfile_of_node() (abipy.abio.robots.Robot method) add_fig_kwargs() (in module abipy.tools.plotting) add_file() (abipy.abio.robots.Robot method) (abipy.ppcodes.oncv_plotter.MultiOncvPlotter method) (abipy.tools.plotting.GenericDataFilesPlotter method) add_filechild() (abipy.flowtk.nodes.FileNode method) add_flow() (abipy.flowtk.launcher.MultiFlowScheduler method) (abipy.flowtk.launcher.PyFlowScheduler method) add_fundgap_span() (abipy.electrons.ebands.ElectronBands method) add_label_cycle() (abipy.flowtk.abiinspect.CyclesPlotter method) add_line() (abipy.flowtk.launcher.ScriptEditor method) add_lines() (abipy.flowtk.launcher.ScriptEditor method) add_main() (abipy.tools.iotools.PythonScript method) add_mdf() (abipy.electrons.bse.MdfPlotter method) add_mdf_file() (abipy.electrons.bse.MultipleMdfPlotter method) add_ncpaths() (abipy.electrons.lruj.LrujAnalyzer method) add_neb_opts() (in module abipy.scripts.abiml) add_nn_name_opt() (in module abipy.scripts.abiml) add_nn_names_opt() (in module abipy.scripts.abiml) add_nprocs_opt() (in module abipy.scripts.abiml) add_periodic_replicas() (in module abipy.tools.numtools) add_phbands() (abipy.dfpt.phonons.PhononBandsPlotter method) add_phdos() (abipy.dfpt.phonons.PhononDosPlotter method) add_phonon_works_and_build() (abipy.flowtk.gruneisen.GruneisenWork method) add_phonopy_opts() (in module abipy.scripts.abiml) add_phonopy_works_and_build() (abipy.flowtk.abiphonopy.PhonopyGruneisenWork method) add_plotly_fig_kwargs() (in module abipy.tools.plotting) add_plotter() (abipy.dfpt.phonons.PhononBandsPlotter method) (abipy.electrons.ebands.ElectronBandsPlotter method) add_relax_opts() (in module abipy.scripts.abiml) add_state() (abipy.core.atom.AtomicConfiguration method) add_tags() (abipy.abio.inputs.AbinitInput method) (abipy.abio.inputs.MultiDataset method) add_text() (abipy.abio.robots.RobotPythonScript method) add_vrect_to_fig() (abipy.panels.nodes.StatusCards method) add_workdir_verbose_opts() (in module abipy.scripts.abiml) addnew_from() (abipy.abio.inputs.MultiDataset method) ae (abipy.ppcodes.oncv_parser.AePsNamedTuple attribute) ae_core_density_on_mesh() (abipy.core.fields.Density class method) AePsNamedTuple (class in abipy.ppcodes.oncv_parser) afm_symmops (abipy.core.symmetries.AbinitSpaceGroup property) all_characteristics (abipy.abio.abivar_database.variables.VarDatabase attribute) ALL_COMPS (abipy.dfpt.msqdos.MsqDos attribute) all_docs_with_tag() (abipy.flowtk.abiinspect.YamlTokenizer method) all_done (abipy.flowtk.works.Work property) ALL_ELASTIC_TENSOR_NAMES (abipy.dfpt.elastic.ElasticData attribute) all_external_params (abipy.abio.abivar_database.variables.VarDatabase attribute) all_have_ibte (abipy.eph.rta.RtaRobot property) ALL_NN_TYPES (abipy.ml.aseml.CalcBuilder attribute) all_ok (abipy.flowtk.flows.Flow property) ALL_PIEZOELECTRIC_TENSOR_NAMES (abipy.dfpt.elastic.ElasticData attribute) all_qsamps (abipy.eph.a2f.A2fRobot attribute) ALL_STATUS (abipy.flowtk.nodes.Node attribute) all_status_strings() (abipy.flowtk.nodes.Status class method) ALL_TENSOR_NAMES (abipy.dfpt.elastic.ElasticData attribute) all_visunames() (abipy.iotools.visualizer.Visualizer class method) ALL_VOIGT_COMPS (abipy.ml.aseml.AseResultsComparator attribute) all_yaml_docs() (abipy.flowtk.abiinspect.YamlTokenizer method) allocate() (abipy.flowtk.flows.Flow method) (abipy.flowtk.works.Work method) allocated (abipy.flowtk.flows.Flow property) alpha (abipy.electrons.fatbands.FatBandsFile attribute) alphas (abipy.electrons.lruj.LrujResults attribute) alternate() (in module abipy.tools.numtools) amu (abipy.dfpt.anaddbnc.AnaddbNcFile property) amu_list() (abipy.lumi.deltaSCF.DeltaSCF method) amu_symbol (abipy.dfpt.gruneisen.GrunsNcFile property) anacompare_asr() (abipy.dfpt.ddb.DdbFile method) anacompare_becs() (abipy.dfpt.ddb.DdbRobot method) anacompare_dipdip() (abipy.dfpt.ddb.DdbFile method) anacompare_elastic() (abipy.dfpt.ddb.DdbRobot method) anacompare_eps0() (abipy.dfpt.ddb.DdbRobot method) anacompare_epsinf() (abipy.dfpt.ddb.DdbRobot method) anacompare_phbands_with_quad() (abipy.dfpt.ddb.DdbFile method) anacompare_phdos() (abipy.dfpt.ddb.DdbFile method) anacompare_rifcsph() (abipy.dfpt.ddb.DdbFile method) AnaddbError AnaddbInput (class in abipy.abio.inputs) AnaddbInputError AnaddbNcFile (class in abipy.dfpt.anaddbnc) AnaddbNcRobot (class in abipy.dfpt.anaddbnc) AnaddbTask (class in abipy.flowtk.tasks) anaget_dielectric_tensor_generator() (abipy.dfpt.ddb.DdbFile method) anaget_elastic() (abipy.dfpt.ddb.DdbFile method) anaget_epsinf_and_becs() (abipy.dfpt.ddb.DdbFile method) anaget_ifc() (abipy.dfpt.ddb.DdbFile method) anaget_interpolated_ddb() (abipy.dfpt.ddb.DdbFile method) anaget_nlo() (abipy.dfpt.ddb.DdbFile method) anaget_phbst_and_phdos_files() (abipy.dfpt.ddb.DdbFile method) anaget_phdoses_with_gauss() (in module abipy.dfpt.vzsisa) anaget_phmodes_at_qpoint() (abipy.dfpt.ddb.DdbFile method) anaget_phmodes_at_qpoints() (abipy.dfpt.ddb.DdbFile method) anaget_phonon_plotters() (abipy.dfpt.ddb.DdbRobot method) anaget_phonopy_ifc() (abipy.dfpt.ddb.DdbFile method) anaget_raman() (abipy.dfpt.ddb.DdbFile method) angle_tolerance (abipy.core.skw.ElectronInterpolator attribute) animate() (abipy.dfpt.phonons.PhononBandsPlotter method) (abipy.electrons.ebands.ElectronBandsPlotter method) any2mb() (in module abipy.flowtk.qutils) append() (abipy.abio.inputs.MultiDataset method) (abipy.dfpt.ddb.ZeffsList method) (abipy.dynamics.analyzer.ArrheniusPlotter method) (abipy.tools.tensors.DielectricDataList method) append_plotter() (abipy.dfpt.phonons.PhononBandsPlotter method) Appender (class in abipy.tools.decorators) application_adapter_solutions (abipy.flowtk.scheduler_error_parsers.AbstractError property) (abipy.flowtk.scheduler_error_parsers.MemoryCancelError property) (abipy.flowtk.scheduler_error_parsers.TimeCancelError property) apply() (abipy.electrons.scissors.Scissors method) apply_corrections() (abipy.flowtk.scheduler_error_handlers.SchedulerErrorHandler method) apply_getters() (abipy.flowtk.nodes.Dependency method) apply_scissors() (abipy.electrons.ebands.ElectronBands method) apropos() (abipy.abio.abivar_database.variables.InputVariables method) arange() (abipy.abio.inputs.AbinitInput method) ArpesPlotter (class in abipy.electrons.arpes) arr_tt0 (abipy.dynamics.analyzer.Msdtt0 attribute) ArrayPlotter (class in abipy.tools.plotting) ArrheniusEntry (class in abipy.dynamics.analyzer) ArrheniusPlotter (class in abipy.dynamics.analyzer) as_bool() (in module abipy.flowtk.utils) as_calculator() (in module abipy.ml.aseml) as_condition() (abipy.flowtk.utils.Condition class method) as_ddb() (abipy.dfpt.ddb.DdbFile class method) as_dict() (abipy.abio.decorators.LdaUDecorator method) (abipy.abio.decorators.LexxDecorator method) (abipy.abio.decorators.SmearingDecorator method) (abipy.abio.decorators.SpinDecorator method) (abipy.abio.decorators.XcDecorator method) (abipy.abio.inputs.AbinitInput method) (abipy.abio.inputs.AnaddbInput method) (abipy.abio.inputs.AtdepInput method) (abipy.abio.inputs.Cut3DInput method) (abipy.abio.inputs.OpticInput method) (abipy.abio.robots.Robot method) (abipy.core.atom.NlkState method) (abipy.core.func1d.Function1D method) (abipy.core.kpoints.KpointList method) (abipy.dfpt.ddb.DynQuad method) (abipy.dfpt.ddb.Zeffs method) (abipy.electrons.ebands.ElectronBands method) (abipy.electrons.gsr.GsrFile method) (abipy.electrons.gw.QPState method) (abipy.flowtk.abiinspect.YamlDoc method) (abipy.flowtk.events.Correction method) (abipy.flowtk.events.DilatmxErrorHandler method) (abipy.flowtk.flows.Flow method) (abipy.flowtk.nodes.HistoryRecord method) (abipy.flowtk.nodes.NodeResults method) (abipy.flowtk.tasks.ParalHints method) (abipy.flowtk.tasks.TaskManager method) as_ebands() (abipy.electrons.ebands.ElectronBands class method) as_edos() (abipy.electrons.ebands.ElectronDos class method) as_flow() (abipy.flowtk.flows.Flow class method) as_kpoint() (abipy.core.kpoints.Kpoint class method) as_kpoints() (in module abipy.core.kpoints) as_manager() (abipy.flowtk.tasks.TaskManager class method) as_ngkpt() (abipy.core.structure.Structure method) as_node() (abipy.flowtk.nodes.Node class method) as_phbands() (abipy.dfpt.phonons.PhononBands class method) as_phdos() (abipy.dfpt.phonons.PhononDos class method) as_slice() (in module abipy.tools.duck) as_status() (abipy.flowtk.nodes.Status class method) (abipy.ppcodes.ppgen.Status class method) as_structure() (abipy.core.structure.Structure class method) asctime (abipy.flowtk.nodes.HistoryRecord attribute) ase_optimizer_cls() (in module abipy.ml.aseml) AseMdLog (class in abipy.ml.aseml) AseRelaxation (class in abipy.ml.aseml) AseResults (class in abipy.ml.aseml) AseResultsComparator (class in abipy.ml.aseml) AseTrajectoryPlotter (class in abipy.ml.aseml) ask_yes_no() (in module abipy.tools.iotools) ask_yesno() (in module abipy.tools.iotools) asr (abipy.panels.ddb.PanelWithAnaddbParams attribute) asr_breaking() (abipy.dfpt.phonons.PhononBands method) assume_gap (abipy.eph.rta.RtaFile property) (abipy.eph.rta.RtaRobot property) atan_logders (abipy.ppcodes.oncv_parser.OncvParser property) AtanLogDer (class in abipy.ppcodes.oncv_parser) AtdepInput (class in abipy.abio.inputs) AtdepInputError AtdepTask (class in abipy.flowtk.tasks) atol (abipy.eph.v1qavg.V1qAvgRobot attribute) AtomicConfiguration (class in abipy.core.atom) AtomicFile (class in abipy.tools.iotools) AtomicLevel (class in abipy.ppcodes.oncv_parser) atoms (abipy.ml.aseml.AseResults attribute) atoms_from_structure() (in module abipy.flowtk.abiphonopy) atsym (abipy.panels.oncvpsp_gui.OncvInput attribute) (abipy.ppcodes.oncv_parser.OncvParser attribute) attrs (abipy.flowtk.nodes.Node property) autodoc() (abipy.flowtk.tasks.TaskManager class method) autoparal_run() (abipy.flowtk.tasks.AbinitTask method) (abipy.flowtk.tasks.OpticTask method) available_advanced_options (abipy.electrons.lobster.LobsterInput attribute) average_gruneisen() (abipy.dfpt.gruneisen.GrunsNcFile method) averaged (abipy.electrons.lobster.CoxpFile attribute) averages() (abipy.tools.elate.elastic.Elastic method) avg_volume (abipy.dynamics.analyzer.DiffusionData attribute) (abipy.dynamics.analyzer.MdAnalyzer property)

B

b_qnu (abipy.eph.vpq.Polaron property) BaderCharges (class in abipy.electrons.charges) band_block (abipy.electrons.eskw.EskwFile property) bands_dict (abipy.dfpt.phonons.PhononBandsPlotter property) bands_in (abipy.wannier90.abiwan.AbiwanFile property) bands_statdiff() (abipy.electrons.ebands.ElectronBandsPlotter method) bandstructure_flow() (in module abipy.flowtk.flows) BandStructureWork (class in abipy.flowtk.works) bandwidths (abipy.electrons.ebands.ElectronBands property) base_point (abipy.core.kpoints.KpointStar property) BaseEphReader (class in abipy.eph.common) basename (abipy.abio.variable.InputVariable property) (abipy.flowtk.nodes.FileNode property) (abipy.flowtk.utils.Directory property) (abipy.flowtk.utils.File property) BaseParser (class in abipy.ppcodes.base_parser) BaseRobotPanel (class in abipy.panels.core) bcc() (abipy.core.structure.Structure class method) bec_tasks (abipy.flowtk.abiphonopy.PhonopyWork attribute) becs (abipy.dfpt.anaddbnc.AnaddbNcFile attribute) (abipy.dfpt.anaddbnc.AnaddbNcFile property) becs_cart (abipy.eph.gkq.GkqFile property) becs_list (abipy.dfpt.ddb.BecsData attribute) BecsData (class in abipy.dfpt.ddb) BecWork (class in abipy.flowtk.works) BerryPhasePolarization (class in abipy.abio.outputs) best_angcoeff (abipy.dynamics.analyzer.DiffusionData attribute) binpath (abipy.iotools.visualizer.Visualizer property) BlochRegularGridInterpolator (class in abipy.tools.numtools) block_mean_var() (in module abipy.dynamics.analyzer) block_size1 (abipy.dynamics.analyzer.DiffusionData attribute) block_size2 (abipy.dynamics.analyzer.DiffusionData attribute) block_sizes1 (abipy.dynamics.analyzer.SigmaBerend attribute) block_sizes2 (abipy.dynamics.analyzer.SigmaBerend attribute) blocks (abipy.dfpt.ddb.DdbFile property)

BlueGeneJob (class in abipy.flowtk.qjobs) bma (abipy.core.func1d.Function1D property) bo_nvols (abipy.dfpt.vzsisa.Vzsisa property) bo_strains_ac (abipy.flowtk.qha_2d.Qha2DData attribute) bo_vol_scales (abipy.flowtk.vzsisa.VzsisaResults attribute) born_to_lotosplitting() (in module abipy.dfpt.converters) Bose_einstein() (in module abipy.lumi.utils_lumi) boxed_atom() (abipy.core.structure.Structure class method) boxed_molecule() (abipy.core.structure.Structure class method) boxplot() (abipy.dfpt.phonons.PhononBands method) (abipy.dfpt.phonons.PhononBandsPlotter method) (abipy.electrons.ebands.ElectronBands method) (abipy.electrons.ebands.ElectronBandsPlotter method) boxplotly() (abipy.dfpt.phonons.PhononBands method) (abipy.electrons.ebands.ElectronBands method) braket() (abipy.waves.pwwave.PWWaveFunction method) browse() (abipy.abio.abivar_database.variables.Variable method) BSE (abipy.abio.enums.RUNL attribute) bse_with_mdf_inputs() (in module abipy.abio.factories) BseMdfWork (class in abipy.flowtk.works) bstart (abipy.eph.gstore.Gqk attribute) (abipy.eph.gwan.Gqk attribute) (abipy.eph.vpq.Polaron attribute) bstop (abipy.eph.vpq.Polaron attribute) build() (abipy.electrons.scissors.ScissorsBuilder method) (abipy.flowtk.flows.Flow method) (abipy.flowtk.works.Work method) build_abinit_input_from_file() (in module abipy.scripts.abinp) build_and_pickle_dump() (abipy.flowtk.flows.Flow method) build_flow_main_parser() (in module abipy.flowtk) build_mesh() (in module abipy.tools.numtools) ButtonContext (class in abipy.panels.core) bxsf_write() (in module abipy.iotools.xsf) bz (abipy.core.kpoints.Ktables attribute) BzRegularGridInterpolator (class in abipy.tools.numtools)

C

cached_classproperty (class in abipy.tools.decorators) calc_kptbounds() (abipy.core.structure.Structure method) calc_ksampling() (abipy.core.structure.Structure method) calc_ngkpt() (abipy.core.structure.Structure method) calc_shiftk() (abipy.core.structure.Structure method) calc_type (abipy.panels.oncvpsp_gui.OncvGui attribute) CalcBuilder (class in abipy.ml.aseml) calculate_gruns_finite_differences() (in module abipy.dfpt.gruneisen) calculate_gw_from_sigeph_skb() (abipy.eph.cumulant.CumulantSelfEnergy class method) calculate_pade_a() (in module abipy.tools.pade) calculate_sigma_skb_fromgw() (abipy.eph.cumulant.CumulantSelfEnergy method) callback() (abipy.flowtk.launcher.MultiFlowScheduler method) (abipy.flowtk.launcher.PyFlowScheduler method) can_change_physics (abipy.flowtk.events.DilatmxErrorHandler attribute) cancel() (abipy.flowtk.flows.Flow method) (abipy.flowtk.tasks.TaskManager method) cart_bounds (abipy.core.kpoints.Kpath property) cart_coords (abipy.core.kpoints.Kpoint property) cart_dir (abipy.flowtk.finitediff.Perturbation attribute) cart_forces (abipy.dfpt.ddb.DdbFile property) (abipy.electrons.gsr.GsrFile property) cart_stress_tensor (abipy.dfpt.ddb.DdbFile property) (abipy.electrons.gsr.GsrFile property) cbk_qptdm_workflow() (abipy.flowtk.flows.G0W0WithQptdmFlow method) CC4S (abipy.abio.enums.GWR_TASK attribute) CC4S_FULL (abipy.abio.enums.GWR_TASK attribute) cell (abipy.ml.aseml.RX_MODE attribute) cempty() (abipy.core.gsphere.GSphere method) (abipy.core.mesh3d.Mesh3D method) center_wrt_defect() (in module abipy.embedding.utils_ifc) change_ace_theme() (abipy.panels.oncvpsp_gui.OncvGui method) change_ext_from_top() (in module abipy.tools.iotools) change_labels() (abipy.abio.robots.Robot method) change_manager() (abipy.flowtk.flows.Flow method) change_task_start() (in module abipy.flowtk.mocks) check() (abipy.flowtk.scheduler_error_handlers.SchedulerErrorHandler method) check_dependencies() (abipy.flowtk.flows.Flow method) check_ordered_structure() (in module abipy.scripts.abistruct) check_pid_file() (abipy.flowtk.flows.Flow method) check_site_symmetries() (abipy.core.site_symmetries.SiteSymmetries method) (abipy.dfpt.ddb.Zeffs method) (abipy.dfpt.msqdos.MsqDos method) check_spectator() (in module abipy.flowtk.nodes) check_status() (abipy.flowtk.flows.Flow method) (abipy.flowtk.mocks.InfiniteFlow method) (abipy.flowtk.nodes.FileNode method) (abipy.flowtk.nodes.Node method) (abipy.flowtk.works.Work method) (abipy.ppcodes.ppgen.OncvGenerator method) CHECK_SYMTAB (abipy.abio.enums.WFK_TASK attribute) check_unfilled_entries_in_gvals() (abipy.eph.gstore.GstoreFile method) check_vasp_success() (in module abipy.ml.extxyz_generator) check_weights() (abipy.core.kpoints.KpointList method) chemical_symbols (abipy.iotools.ETSF_Reader property) CHI0 (abipy.abio.enums.GWR_TASK attribute) chi0_coefficients (abipy.electrons.lruj.LrujResults attribute) chi_coefficients (abipy.electrons.lruj.LrujResults attribute) chmod() (abipy.flowtk.utils.File method) chneut (abipy.panels.ddb.PanelWithAnaddbParams attribute) chroot() (abipy.flowtk.flows.Flow method) (abipy.flowtk.works.Work method) chunks() (abipy.flowtk.works.Work method) Citation (class in abipy.flowtk.psrepos) CLAMPED (abipy.flowtk.finitediff.IonsMode attribute) class_for_ext() (abipy.abio.robots.Robot class method) class_handles_filename() (abipy.abio.robots.Robot class method) (abipy.dfpt.ddb.DdbRobot class method) CLASSIFY (abipy.abio.enums.WFK_TASK attribute) classproperty (class in abipy.tools.decorators) clean() (abipy.flowtk.utils.Directory method) clean_structure() (in module abipy.embedding.utils_ifc) cleanup() (abipy.flowtk.launcher.PyFlowScheduler method) cli_abiopen() (in module abipy.scripts.abirun) close() (abipy.abio.abivars.AbinitInputFile method) (abipy.abio.outputs.OutNcFile method) (abipy.abio.robots.Robot method) (abipy.dfpt.anaddbnc.AnaddbNcFile method) (abipy.dfpt.gruneisen.GrunsNcFile method) (abipy.dfpt.phonons.PhbstFile method) (abipy.dfpt.phonons.PhdosFile method) (abipy.dfpt.qha.QHA3P method) (abipy.dynamics.hist.HistFile method) (abipy.electrons.abitk.KmeshFile method) (abipy.electrons.bse.MdfFile method) (abipy.electrons.eskw.EskwFile method) (abipy.electrons.fatbands.FatBandsFile method) (abipy.electrons.fold2bloch.Fold2BlochNcfile method) (abipy.electrons.gsr.GsrFile method) (abipy.electrons.gw.SigresFile method) (abipy.electrons.gwr.GwrFile method) (abipy.electrons.optic.OpticNcFile method) (abipy.electrons.orbmag.OrbmagAnalyzer method) (abipy.electrons.orbmag.OrbmagFile method) (abipy.electrons.psps.PspsFile method) (abipy.electrons.scr.ScrFile method) (abipy.electrons.tchim.TchimFile method) (abipy.eph.a2f.A2fFile method) (abipy.eph.gkq.GkqFile method) (abipy.eph.gpath.GpathFile method) (abipy.eph.gstore.GstoreFile method) (abipy.eph.gwan.GwanFile method) (abipy.eph.rta.RtaFile method) (abipy.eph.sigeph.SigEPhFile method) (abipy.eph.transportfile.TransportFile method) (abipy.eph.v1qavg.V1qAvgFile method) (abipy.eph.v1qnu.V1qnuFile method) (abipy.eph.v1sym.V1symFile method) (abipy.eph.vpq.VpqFile method) (abipy.eph.wr.WrNcFile method) (abipy.flowtk.abiinspect.YamlTokenizer method) (abipy.tools.iotools.AtomicFile method) (abipy.wannier90.abiwan.AbiwanFile method) (abipy.wannier90.wout.WoutFile method) (abipy.waves.wfkfile.WfkFile method) close_all_cards() (abipy.panels.nodes.StatusCards method) cmat_inds_names() (in module abipy.dfpt.qha_general_stress) cmdarg (abipy.iotools.visualizer.Visualizer property) cod_search() (in module abipy.core.structure) CodStructures (class in abipy.core.restapi) col2label (abipy.flowtk.zsisa.ZsisaResults property) color (abipy.dynamics.cpx.Key attribute) color_der (abipy.electrons.psps.PspsFile attribute) color_hex (abipy.flowtk.nodes.Node property) color_l (abipy.ppcodes.oncv_plotter.OncvPlotter attribute) color_opts (abipy.flowtk.nodes.Status property) color_rgb (abipy.flowtk.nodes.FileNode attribute) (abipy.flowtk.nodes.Node attribute) (abipy.flowtk.tasks.AnaddbTask attribute) (abipy.flowtk.tasks.AtdepTask attribute) (abipy.flowtk.tasks.DdkTask attribute) (abipy.flowtk.tasks.EffMassTask attribute) (abipy.flowtk.tasks.ElasticTask attribute) (abipy.flowtk.tasks.EphTask attribute) (abipy.flowtk.tasks.GwrTask attribute) (abipy.flowtk.tasks.KerangeTask attribute) (abipy.flowtk.tasks.NscfTask attribute) (abipy.flowtk.tasks.OpticTask attribute) (abipy.flowtk.tasks.PhononTask attribute) (abipy.flowtk.tasks.RelaxTask attribute) (abipy.flowtk.tasks.ScfTask attribute) (abipy.flowtk.tasks.SigmaTask attribute)

color_spin (abipy.electrons.gw.SigresFile attribute) (abipy.eph.sigeph.SigEPhFile attribute) colored (abipy.flowtk.nodes.Status property) colormap (abipy.dfpt.qha.AbstractQmeshAnalyzer attribute) colormap_widget() (in module abipy.display.utils) colors_dropdow() (in module abipy.display.utils) COLS_DICT (abipy.dynamics.cpx.EvpFile attribute) combiboxplot() (abipy.dfpt.phonons.PhononBandsPlotter method) (abipy.electrons.ebands.ElectronBandsPlotter method) combiplot() (abipy.dfpt.phonons.PhononBandsPlotter method) (abipy.dfpt.phonons.PhononDosPlotter method) (abipy.dynamics.hist.HistRobot method) (abipy.electrons.ebands.ElectronBandsPlotter method) (abipy.electrons.ebands.ElectronDosPlotter method) (abipy.flowtk.abiinspect.CyclesPlotter method) combiplotly() (abipy.dfpt.phonons.PhononBandsPlotter method) (abipy.dfpt.phonons.PhononDosPlotter method) (abipy.electrons.ebands.ElectronBandsPlotter method) (abipy.electrons.ebands.ElectronDosPlotter method) comment (abipy.abio.inputs.AbinitInput property) common_eph_params (abipy.eph.common.BaseEphReader property) common_oxidation_states() (in module abipy.dynamics.analyzer) compare() (abipy.core.structure.Structure method) compare_abivars() (abipy.flowtk.flows.Flow method) compare_d2de_scf_cycles() (abipy.abio.outputs.AbinitOutputFile method) compare_ebands() (abipy.flowtk.flows.Flow method) compare_gauss_edos() (abipy.electrons.ebands.ElectronBands method) compare_gs_scf_cycles() (abipy.abio.outputs.AbinitOutputFile method) compare_hist() (abipy.flowtk.flows.Flow method) compare_structures() (abipy.flowtk.flows.Flow method) (in module abipy.scripts.abicomp) compare_version() (abipy.flowtk.tasks.AbinitBuild method) CompareDdbWithMP (class in abipy.panels.ddb) CompareEbandsWithMP (class in abipy.panels.electrons) completed (abipy.electrons.gwr.GwrFile property) composition (abipy.dynamics.analyzer.ArrheniusEntry attribute) comps2inds (abipy.dfpt.ddb.DynQuad attribute) (abipy.dfpt.ddb.Zeffs attribute) compute_star() (abipy.core.kpoints.Kpoint method) computed_components_intersection (abipy.electrons.optic.OpticRobot property) computed_dynmat (abipy.dfpt.ddb.DdbFile property) concat() (abipy.dfpt.ddb.ZeffsList method) Condition (class in abipy.flowtk.utils) conductivity (abipy.dynamics.analyzer.DiffusionData attribute) ConducWork (class in abipy.flowtk.works) conjugate() (abipy.core.func1d.Function1D method) connect_signals() (abipy.flowtk.flows.Flow method) connecting_vars() (abipy.flowtk.nodes.Dependency method) (abipy.flowtk.nodes.Product method) consistency_check() (abipy.dynamics.analyzer.MdAnalyzer method) ConvBecsEpsFlow (class in abipy.flowtk.dfpt_flows) ConvBecsEpsResults (class in abipy.flowtk.dfpt_flows) ConvData (class in abipy.ppcodes.oncv_parser) converged (abipy.dfpt.qha_general_stress.ThermalData attribute) convert() (abipy.core.structure.Structure method) (abipy.panels.structure.StructurePanel method) convert_to_ieee() (abipy.dfpt.elastic.ElasticData method) convert_ucart() (abipy.dfpt.msqdos.MsqDos method) coords_dataframe (abipy.core.restapi.DatabaseStructures property) cop_type (abipy.electrons.lobster.CoxpFile attribute) (abipy.electrons.lobster.ICoxpFile attribute) copy() (abipy.core.atom.AtomicConfiguration method) (abipy.core.gsphere.GSphere method) (abipy.core.kpoints.Kpoint method) (abipy.dynamics.analyzer.ArrheniusPlotter method) (abipy.electrons.gw.QPState method) (abipy.flowtk.tasks.ParalHints method) copy_abiext() (abipy.flowtk.utils.Directory method) copy_r() (abipy.flowtk.utils.Directory method) CORRALGO (class in abipy.ml.aseml) correct() (abipy.flowtk.scheduler_error_handlers.SchedulerErrorHandler method) Correction (class in abipy.flowtk.events) corrections (abipy.flowtk.nodes.Node property) CorrectorProtocolApplication (class in abipy.flowtk.scheduler_error_parsers) CorrectorProtocolScheduler (class in abipy.flowtk.scheduler_error_parsers) count() (abipy.core.gsphere.GSphere method) (abipy.core.kpoints.KpointList method) CoxpFile (class in abipy.electrons.lobster) cpdata2dst (abipy.flowtk.abiphonopy.PhonopyWork attribute) cplex (abipy.eph.gstore.Gqk attribute) (abipy.eph.gwan.Gqk attribute) cprint_traceback() (in module abipy.ml.ml_phonopy) crandom() (abipy.core.mesh3d.Mesh3D method) create_ascii_vib() (abipy.dfpt.phonons.PhononBands method) create_phononwebsite_json() (abipy.dfpt.phonons.PhononBands method) create_sqldb() (abipy.flowtk.launcher.MultiFlowScheduler method) create_tasks() (abipy.flowtk.works.QptdmWork method) create_xsf() (abipy.eph.wr.WrNcFile method) create_xyz_vib() (abipy.dfpt.phonons.PhononBands method) created (abipy.flowtk.nodes.HistoryRecord attribute) creation_date (abipy.flowtk.flows.Flow attribute) critical() (abipy.flowtk.nodes.NodeHistory method) CRITICAL_EVENTS (abipy.flowtk.tasks.NscfTask attribute) (abipy.flowtk.tasks.RelaxTask attribute) (abipy.flowtk.tasks.ScfTask attribute) (abipy.flowtk.tasks.SigmaTask attribute) cube_write_data() (in module abipy.iotools.cube) cube_write_structure_mesh() (in module abipy.iotools.cube) CumulantEPhFile (class in abipy.eph.cumulant) CumulantPhReader (class in abipy.eph.cumulant) CumulantQpTempState (class in abipy.eph.cumulant) CumulantSelfEnergy (class in abipy.eph.cumulant) customize_mpl() (in module abipy.tools.cli_parsers) Cut3D (class in abipy.flowtk.wrappers) cut3d() (abipy.flowtk.wrappers.Cut3D method) Cut3DInput (class in abipy.abio.inputs) cycle_class (abipy.flowtk.tasks.AbinitTask property) cycle_markers (abipy.flowtk.zsisa.ZsisaResults property) CyclesPlotter (class in abipy.flowtk.abiinspect) czeros() (abipy.core.gsphere.GSphere method) (abipy.core.mesh3d.Mesh3D method)

D

D2DEScfCycle (class in abipy.flowtk.abiinspect) data (abipy.ppcodes.oncv_parser.GrepResults attribute) data_from_cplx_mode() (in module abipy.tools.numtools) (in module abipy.tools.plotting) DatabaseStructures (class in abipy.core.restapi) DataCls (abipy.flowtk.finitediff.FiniteDisplWork attribute) (abipy.flowtk.finitediff.FiniteEfieldWork attribute) (abipy.flowtk.finitediff.FiniteHfieldWork attribute) (abipy.flowtk.finitediff.FiniteStrainWork attribute) dataframe (abipy.core.restapi.CodStructures property) (abipy.core.restapi.MpStructures property) (abipy.electrons.lobster.ICoxpFile property) dataframe_from_ebands() (in module abipy.electrons.ebands) dataframe_from_filepath() (in module abipy.tools.iotools) dataframe_from_pseudos() (in module abipy.electrons.psps) dataframe_from_results_list() (in module abipy.ml.aseml) dataframes_from_structures() (in module abipy.core.structure) dataset (abipy.abio.variable.InputVariable property) dbname (abipy.core.restapi.CodStructures attribute) (abipy.core.restapi.MpStructures attribute) dchide (abipy.dfpt.anaddbnc.AnaddbNcFile property) dchidt (abipy.dfpt.anaddbnc.AnaddbNcFile property) ddb_filepath (abipy.flowtk.tasks.AnaddbTask property) ddb_ngqpt (abipy.eph.common.BaseEphReader property) ddb_paths (abipy.flowtk.dfpt_flows.ConvBecsEpsResults attribute) ddb_relax_paths (abipy.flowtk.qha_2d.Qha2DData attribute) (abipy.flowtk.vzsisa.VzsisaResults attribute) (abipy.flowtk.zsisa.ZsisaResults attribute) ddb_relax_volumes_ang3 (abipy.flowtk.vzsisa.VzsisaResults attribute) ddb_ucell_to_ddb_supercell() (in module abipy.dfpt.converters) ddb_ucell_to_phonopy_supercell() (in module abipy.dfpt.converters) DdbError DdbFile (class in abipy.dfpt.ddb) DdbFile.AnaddbError DdbFilePanel (class in abipy.panels.ddb) DdbPanelWithFileInput (class in abipy.panels.ddb) DdbRobot (class in abipy.dfpt.ddb) DdbRobotPanel (class in abipy.panels.ddb) ddepert_from_gsinput() (in module abipy.abio.factories) DDK (abipy.abio.enums.WFK_TASK attribute) DDK_DIAGO (abipy.abio.enums.WFK_TASK attribute) ddk_filepath (abipy.flowtk.tasks.AnaddbTask property) ddk_filepaths (abipy.flowtk.tasks.OpticTask property) ddkpert_from_gsinput() (in module abipy.abio.factories) DdkTask (class in abipy.flowtk.tasks) debl (abipy.panels.oncvpsp_gui.Lparams attribute) debl_dir (abipy.panels.oncvpsp_gui.OncvGui attribute) debl_num (abipy.panels.oncvpsp_gui.OncvGui attribute) debl_step (abipy.panels.oncvpsp_gui.OncvGui attribute) debug() (abipy.flowtk.flows.Flow method) (abipy.flowtk.nodes.NodeHistory method) debye_temp (abipy.dfpt.gruneisen.GrunsNcFile property) (abipy.dfpt.phonons.PhononDos property) declare_var() (abipy.flowtk.launcher.ScriptEditor method) declare_vars() (abipy.flowtk.launcher.ScriptEditor method) decode_pseudopath() (in module abipy.flowtk.psrepos) decorate_ax() (abipy.dfpt.phonons.PhononBands method) (abipy.electrons.ebands.ElectronBands method) (abipy.ppcodes.oncv_plotter.OncvPlotter static method) decorate_plotly() (abipy.dfpt.phonons.PhononBands method) (abipy.electrons.ebands.ElectronBands method) decorators (abipy.abio.inputs.AbinitInput property) decrease_mem() (abipy.flowtk.scheduler_error_parsers.CorrectorProtocolApplication method) deepcopy() (abipy.abio.inputs.AbstractInput method) (abipy.abio.inputs.MultiDataset method) (abipy.dynamics.analyzer.MdAnalyzer method) (abipy.electrons.ebands.ElectronBands method) (abipy.flowtk.tasks.TaskManager method) DEFAULT_EDITOR (abipy.tools.iotools.Editor attribute) defect_index() (abipy.lumi.deltaSCF.DeltaSCF method) degeneracies() (abipy.electrons.ebands.ElectronBands method) delta (abipy.ml.aseml.CORRALGO attribute) delta_q() (abipy.lumi.deltaSCF.DeltaSCF method) Delta_Q() (abipy.lumi.lineshape.Lineshape method) Delta_Q_nu() (abipy.lumi.lineshape.Lineshape method) delta_r() (abipy.lumi.deltaSCF.DeltaSCF method) delta_sigmas1 (abipy.dynamics.analyzer.SigmaBerend attribute) delta_sigmas2 (abipy.dynamics.analyzer.SigmaBerend attribute) DeltaSCF (class in abipy.lumi.deltaSCF) den_to_3d_formatted() (abipy.abio.inputs.Cut3DInput class method) den_to_3d_indexed() (abipy.abio.inputs.Cut3DInput class method) den_to_cube() (abipy.abio.inputs.Cut3DInput class method) den_to_molekel() (abipy.abio.inputs.Cut3DInput class method) den_to_tecplot() (abipy.abio.inputs.Cut3DInput class method) den_to_xsf() (abipy.abio.inputs.Cut3DInput class method) densities (abipy.ppcodes.oncv_parser.OncvParser property) density (abipy.electrons.denpot.DensityNcFile property) Density (class in abipy.core.fields) DensityNcFile (class in abipy.electrons.denpot) Dependency (class in abipy.flowtk.nodes) depends_on() (abipy.flowtk.nodes.Node method) depends_on_btn_click() (in module abipy.panels.core) depends_on_dimension() (abipy.abio.abivar_database.variables.Variable method)

deps (abipy.flowtk.nodes.Node property) deps_status (abipy.flowtk.nodes.Node property) depsh (abipy.panels.oncvpsp_gui.OncvInput attribute) derivatives() (abipy.core.atom.RadialFunction method) (abipy.electrons.ebands.ElectronBands method) det (abipy.core.symmetries.LatticeRotation property) df (abipy.dfpt.ddb.BecsData attribute) (abipy.dfpt.ddb.EpsinfData attribute) (abipy.dynamics.cpx.EvpFile property) (abipy.ml.aseml.AseMdLog property) (abipy.ml.relax_scanner.RelaxScannerAnalyzer property) df_to_clipboard() (in module abipy.scripts.abicomp) (in module abipy.scripts.abiview) dfc() (in module abipy.panels.core) dfpt() (abipy.abio.inputs.AnaddbInput class method) dfpt_from_gsinput() (in module abipy.abio.factories) DielectricDataList (class in abipy.tools.tensors) DielectricFunction (class in abipy.electrons.bse) (class in abipy.electrons.scr) DielectricTensor (class in abipy.tools.tensors) DielectricTensorGenerator (class in abipy.dfpt.ddb) diem (abipy.electrons.lruj.LrujResults attribute) diem_token (abipy.electrons.lruj.LrujResults attribute) diff_datasets() (abipy.abio.outputs.AbinitOutputFile method) diff_pos() (abipy.lumi.deltaSCF.DeltaSCF method) diff_pos_mass_weighted() (abipy.lumi.deltaSCF.DeltaSCF method) diff_stats() (in module abipy.ml.aseml) diff_two_structures() (in module abipy.ml.aseml) difflib() (abipy.tools.devtools.HtmlDiff method) diffusion_coeff (abipy.dynamics.analyzer.DiffusionData attribute) DiffusionData (class in abipy.dynamics.analyzer) DiffusionDataList (class in abipy.dynamics.analyzer) diffusions (abipy.dynamics.analyzer.ArrheniusEntry attribute) DilatmxError (class in abipy.flowtk.events) DilatmxErrorHandler (class in abipy.flowtk.events) dipdip (abipy.panels.ddb.PanelWithAnaddbParams attribute) dipquad (abipy.panels.ddb.PanelWithAnaddbParams attribute) dir2abifiles() (in module abipy.abilab) dir_str (abipy.flowtk.finitediff.Perturbation property) direct_gaps (abipy.electrons.ebands.ElectronBands property) DirectDiagoWork (class in abipy.flowtk.gwr_works) Directory (class in abipy.flowtk.utils) dirname (abipy.flowtk.utils.File property) dirpath (abipy.flowtk.psrepos.PseudosRepo property) dirVec() (in module abipy.tools.elate.elastic) dirVec1() (in module abipy.tools.elate.elastic) dirVec2() (in module abipy.tools.elate.elastic) Dirviz (class in abipy.flowtk.utils) disable_notebook() (in module abipy.core.globals) disable_show_messages() (abipy.panels.core.AbipyParameterized method) discard() (abipy.tools.iotools.AtomicFile method) disconnect_signals() (abipy.flowtk.flows.Flow method) DiskError (class in abipy.flowtk.scheduler_error_parsers) dispersionless_states() (abipy.electrons.ebands.ElectronBands method) DISPL (abipy.flowtk.finitediff.PertKind attribute) displ_shape (abipy.dfpt.phonons.PhononBands property) displace() (abipy.core.structure.Structure method) displace_one_site() (abipy.core.structure.Structure method) displacements_visu() (abipy.lumi.deltaSCF.DeltaSCF method) display_top() (in module abipy.tools.devtools) DisplData (class in abipy.flowtk.finitediff) dist (abipy.ml.relax_scanner.Pair attribute) dist_gridpoints_in_spheres() (abipy.core.mesh3d.Mesh3D method) dmatpuopt (abipy.electrons.lruj.LrujResults attribute) docvar() (in module abipy.abio.abivars_db) dos_idos() (abipy.electrons.ebands.ElectronDos method) dos_method (abipy.panels.ddb.PanelWithAnaddbParams attribute) dot() (abipy.core.structure.Structure method) Dotdict (class in abipy.core.restapi) dotget() (abipy.core.restapi.Dotdict method) download_repo_from_url() (in module abipy.flowtk.psrepos) downsample_xyz() (in module abipy.dynamics.cpx) dpade() (in module abipy.tools.pade) dpi (abipy.panels.oncvpsp_gui.OncvGui attribute) draw_displaced_parabolas() (abipy.lumi.deltaSCF.DeltaSCF method) draw_displacements_vesta() (abipy.lumi.deltaSCF.DeltaSCF method) drl (abipy.panels.oncvpsp_gui.OncvInput attribute) ds (abipy.core.kpoints.Kpath property) dte_from_gsinput() (in module abipy.abio.factories) dtepert_from_gsinput() (in module abipy.abio.factories) DteWork (class in abipy.flowtk.works) dtol (abipy.dfpt.qha_general_stress.ThermalData attribute) dump_args() (in module abipy.tools.decorators) dvloc0 (abipy.panels.oncvpsp_gui.OncvInput attribute) dvloc0_dir (abipy.panels.oncvpsp_gui.OncvGui attribute) dvloc0_num (abipy.panels.oncvpsp_gui.OncvGui attribute) dvloc0_step (abipy.panels.oncvpsp_gui.OncvGui attribute) dx (abipy.core.func1d.Function1D property) dyn_mat_eigenvect (abipy.dfpt.phonons.PhononBands property) (abipy.dfpt.phtk.NonAnalyticalPh property) dyn_quad (abipy.dfpt.anaddbnc.AnaddbNcFile property) dyn_quad_df (abipy.dfpt.ddb.PhqData attribute) DynQuad (class in abipy.dfpt.ddb)

E

E (abipy.flowtk.finitediff.PertKind attribute) e0max (abipy.electrons.scissors.ScissorsBuilder property) e0min (abipy.electrons.scissors.ScissorsBuilder property) E_abs() (abipy.lumi.deltaSCF.DeltaSCF method) E_em() (abipy.lumi.deltaSCF.DeltaSCF method) E_FC_ex() (abipy.lumi.deltaSCF.DeltaSCF method) E_FC_gs() (abipy.lumi.deltaSCF.DeltaSCF method) E_zpl() (abipy.lumi.deltaSCF.DeltaSCF method) eb_plotax_kwargs() (abipy.electrons.fatbands.FatBandsFile method) eb_plotly_kwargs() (abipy.electrons.fatbands.FatBandsFile method) ebands (abipy.core.mixins.Has_ElectronBands property) (abipy.electrons.arpes.ArpesPlotter property) (abipy.electrons.effmass_analyzer.EffMassAnalyzer property) (abipy.electrons.eskw.EskwFile property) (abipy.electrons.fatbands.FatBandsFile property) (abipy.electrons.fold2bloch.Fold2BlochNcfile property) (abipy.electrons.gsr.GsrFile property) (abipy.electrons.gw.SigresFile property) (abipy.electrons.gwr.GwrFile property) (abipy.electrons.optic.OpticNcFile property) (abipy.electrons.orbmag.OrbmagFile property) (abipy.electrons.scr.ScrFile property) (abipy.electrons.tchim.TchimFile property) (abipy.eph.a2f.A2fFile property) (abipy.eph.gkq.GkqFile property) (abipy.eph.gstore.GstoreFile property) (abipy.eph.gwan.GwanFile property) (abipy.eph.rta.RtaFile property) (abipy.eph.sigeph.SigEPhFile property) (abipy.eph.transportfile.TransportFile property) (abipy.eph.vpq.Polaron property) (abipy.eph.vpq.VpqFile property) (abipy.wannier90.abiwan.AbiwanFile property) (abipy.waves.wfkfile.WfkFile property) ebands_input() (in module abipy.abio.factories) ebands_k (abipy.eph.gpath.GpathFile property) ebands_kmesh (abipy.panels.core.PanelWithElectronBands attribute) ebands_kmesh_fileinput (abipy.panels.core.PanelWithElectronBands attribute) ebands_kpath (abipy.panels.core.PanelWithElectronBands attribute) ebands_kpath_fileinput (abipy.panels.core.PanelWithElectronBands attribute) ebands_kq (abipy.eph.gpath.GpathFile property) ebands_list (abipy.electrons.ebands.ElectronBandsPlotter property) echarge (abipy.core.atom.AtomicConfiguration property) ecut (abipy.electrons.gsr.GsrFile property) ecuts (abipy.electrons.psps.VnlProjector property) ediff (abipy.ml.relax_scanner.Pair attribute) edit_file() (abipy.flowtk.utils.Editor method) (abipy.tools.iotools.Editor method) edit_files() (abipy.flowtk.utils.Editor method) (abipy.tools.iotools.Editor method) Editor (class in abipy.flowtk.utils) (class in abipy.tools.iotools) EditorError edos (abipy.eph.a2f.A2fFile property) (abipy.eph.sigeph.SigEPhFile property) edos_list (abipy.electrons.ebands.ElectronDosPlotter property) edos_method (abipy.panels.core.PanelWithElectronBands attribute) edos_step_ev (abipy.panels.core.PanelWithElectronBands attribute) edos_width_ev (abipy.panels.core.PanelWithElectronBands attribute) edoses_list (abipy.electrons.ebands.ElectronBandsPlotter property) eff_freq_ex() (abipy.lumi.deltaSCF.DeltaSCF method) eff_freq_gs() (abipy.lumi.deltaSCF.DeltaSCF method) eff_freq_multiD() (abipy.lumi.lineshape.Lineshape method) effective_mass() (abipy.lumi.deltaSCF.DeltaSCF method) effmass_accuracy (abipy.panels.core.PanelWithElectronBands attribute) effmass_degtol_ev (abipy.panels.core.PanelWithElectronBands attribute) effmass_spin (abipy.panels.core.PanelWithElectronBands attribute) EffMassAnalyzer (class in abipy.electrons.effmass_analyzer) EffMassAutoDFPTWork (class in abipy.flowtk.effmass_works) EffMassDFPTWork (class in abipy.flowtk.effmass_works) EffMassLineWork (class in abipy.flowtk.effmass_works) EffMassTask (class in abipy.flowtk.tasks) EGEW (abipy.abio.enums.GWR_TASK attribute) EGW0 (abipy.abio.enums.GWR_TASK attribute) eig (abipy.ppcodes.oncv_parser.AtomicLevel attribute) eigens (abipy.electrons.ebands.ElectronBands property) eigens_kq (abipy.eph.gkq.GkqFile property) EINTERP (abipy.abio.enums.WFK_TASK attribute) einterp (abipy.electrons.eskw.EskwFile property) elastic (abipy.dfpt.qha_general_stress.ThermalData attribute) (abipy.flowtk.zsisa.ThermalRelaxEntry attribute) Elastic (class in abipy.tools.elate.elastic) elastic_data (abipy.dfpt.anaddbnc.AnaddbNcFile property) elastic_ddb_path (abipy.flowtk.zsisa.ThermalRelaxEntry attribute) ElasticData (class in abipy.dfpt.elastic) ElasticOrtho (class in abipy.tools.elate.elastic) ElasticTask (class in abipy.flowtk.tasks) ElasticWork (class in abipy.flowtk.dfpt_works) ELATE() (in module abipy.tools.elate.elastic) ELATE_MaterialsProject() (in module abipy.tools.elate.elastic) ElectricFieldData (class in abipy.flowtk.finitediff) ElectronBands (class in abipy.electrons.ebands) ElectronBandsPlotter (class in abipy.electrons.ebands) ElectronDos (class in abipy.electrons.ebands) ElectronDosPlotter (class in abipy.electrons.ebands) electronic (abipy.abio.outputs.BerryPhasePolarization attribute) ElectronInterpolator (class in abipy.core.skw) Embedded_phonons (class in abipy.embedding.embedding_ifc) empty() (abipy.core.gsphere.GSphere method) (abipy.core.mesh3d.Mesh3D method) empty_with_ibz() (abipy.electrons.ebands.ElectronBands class method) enable_notebook() (in module abipy.core.globals) encode_pseudopath() (in module abipy.flowtk.psrepos) ene (abipy.ml.aseml.AseResults attribute) enemax() (abipy.electrons.ebands.ElectronBands method) enemin() (abipy.electrons.ebands.ElectronBands method) energies (abipy.dfpt.frozen_phonons.FrozenPhonon property) (abipy.electrons.lobster.CoxpFile attribute) (abipy.electrons.lobster.LobsterDoscarFile attribute) (abipy.ppcodes.oncv_parser.AtanLogDer attribute) (abipy.ppcodes.oncv_parser.ConvData attribute) energy (abipy.electrons.gsr.GsrFile property) (abipy.ml.relax_scanner.Entry attribute) energy_per_atom (abipy.electrons.gsr.GsrFile property) energy_terms (abipy.electrons.gsr.GsrFile property) enforce_znucl_and_typat() (abipy.abio.inputs.AbinitInput method) engine (abipy.dynamics.analyzer.DiffusionData attribute) (abipy.dynamics.analyzer.MdAnalyzer property) enter_context() (abipy.tools.iotools.ExitStackWithFiles method) ENTRIES (abipy.flowtk.tasks.TaskManager attribute) Entry (class in abipy.eph.vpq) (class in abipy.ml.relax_scanner)

EnumAction (class in abipy.tools.cli_parsers) EnumMixin (class in abipy.abio.enums) EosWork (class in abipy.flowtk.gs_works) ep (abipy.panels.oncvpsp_gui.Lparams attribute) EPH (abipy.abio.enums.RUNL attribute) eph_ngqpt_fine (abipy.eph.common.BaseEphReader property) EphPlotter (class in abipy.eph.eph_plotter) EphPotFlow (class in abipy.flowtk.eph_flows) EphSelfEnergy (class in abipy.eph.sigeph) EphTask (class in abipy.flowtk.tasks) eps (abipy.flowtk.zsisa.ZsisaResults attribute) eps0 (abipy.dfpt.anaddbnc.AnaddbNcFile property) eps0_gamma_ev (abipy.panels.ddb.PanelWithAnaddbParams attribute) eps_list (abipy.tools.tensors.DielectricDataList property) epsh1 (abipy.panels.oncvpsp_gui.OncvInput attribute) epsh2 (abipy.panels.oncvpsp_gui.OncvInput attribute) epsinf (abipy.dfpt.anaddbnc.AnaddbNcFile attribute) (abipy.dfpt.anaddbnc.AnaddbNcFile property) epsinf_cart (abipy.eph.gkq.GkqFile property) epsinf_list (abipy.dfpt.ddb.EpsinfData attribute) EpsinfData (class in abipy.dfpt.ddb) erange (abipy.eph.vpq.Polaron attribute) err_conductivity (abipy.dynamics.analyzer.DiffusionData attribute) err_diffusion_coeff (abipy.dynamics.analyzer.DiffusionData attribute) err_diffusions (abipy.dynamics.analyzer.ArrheniusEntry attribute) err_msd (abipy.dynamics.analyzer.DiffusionData attribute) errMSDScorrelated (abipy.dynamics.analyzer.DiffusionData attribute) Error (abipy.abio.decorators.AbinitInputDecorator attribute) (abipy.abio.inputs.AbinitInput attribute) (abipy.abio.inputs.AnaddbInput attribute) (abipy.abio.inputs.AtdepInput attribute) (abipy.abio.inputs.MultiDataset attribute) (abipy.abio.inputs.OpticInput attribute) (abipy.core.kpoints.KpointList attribute) (abipy.dfpt.ddb.DdbFile attribute) (abipy.electrons.ebands.ElectronBands attribute) (abipy.electrons.scissors.Scissors attribute) (abipy.flowtk.abiinspect.YamlTokenizer attribute) (abipy.flowtk.events.EventsParser attribute) (abipy.flowtk.flows.Flow attribute) (abipy.flowtk.launcher.PyLauncher attribute) (abipy.flowtk.nodes.Node attribute) (abipy.flowtk.tasks.ParalHints attribute) (abipy.flowtk.tasks.ParalHintsParser attribute) (abipy.iotools.visualizer.Visualizer attribute) (abipy.ppcodes.base_parser.BaseParser attribute) (abipy.tools.iotools.Editor attribute) error_definitions (abipy.flowtk.scheduler_error_parsers.AbstractErrorParser property) (abipy.flowtk.scheduler_error_parsers.PBSErrorParser property) (abipy.flowtk.scheduler_error_parsers.SlurmErrorParser property) errored_tasks (abipy.flowtk.flows.Flow property) errors (abipy.ppcodes.base_parser.BaseParser attribute) (abipy.ppcodes.base_parser.BaseParser property) EskwFile (class in abipy.electrons.eskw) estimated_start_time() (abipy.flowtk.qjobs.PbsProJob method) (abipy.flowtk.qjobs.QueueJob method) (abipy.flowtk.qjobs.SlurmJob method) etotals (abipy.dynamics.hist.HistFile property) ETSF_Reader (class in abipy.iotools) eval() (abipy.tools.pade.SigmaPade method) eval_abinit_operators() (abipy.abio.abivars.AbinitInputParser static method) eval_kpoint() (abipy.tools.numtools.BzRegularGridInterpolator method) eval_line() (abipy.tools.numtools.BlochRegularGridInterpolator method) eval_points() (abipy.tools.numtools.BlochRegularGridInterpolator method) eval_sk() (abipy.core.skw.ElectronInterpolator method) (abipy.core.skw.SkwInterpolator method) (abipy.wannier90.abiwan.HWanR method) evaluate_rpn() (in module abipy.flowtk.utils) event_class (abipy.flowtk.events.DilatmxErrorHandler attribute) event_handlers (abipy.flowtk.nodes.Node property) events (abipy.abio.outputs.AbinitTextFile property) EventsParser (class in abipy.flowtk.events) EvpFile (class in abipy.dynamics.cpx) exc_mdf (abipy.electrons.bse.MdfFile property) exceptions (abipy.abio.robots.Robot property) (abipy.flowtk.nodes.NodeResults property) exclude_nodes() (abipy.flowtk.scheduler_error_parsers.CorrectorProtocolScheduler method) (abipy.flowtk.tasks.TaskManager method) executable (abipy.abio.abivar_database.variables.Variable property) (abipy.flowtk.tasks.AbinitTask property) (abipy.flowtk.tasks.AnaddbTask property) (abipy.flowtk.tasks.AtdepTask property) (abipy.flowtk.tasks.OpticTask property) execute_js() (abipy.panels.flows.JsPane method) exists (abipy.flowtk.utils.Directory property) (abipy.flowtk.utils.File property) ExitStackWithFiles (class in abipy.tools.iotools) explain() (abipy.flowtk.flows.Flow method) export() (abipy.core.structure.Structure method) export_envar() (abipy.flowtk.launcher.ScriptEditor method) export_envars() (abipy.flowtk.launcher.ScriptEditor method) export_structure() (abipy.core.mixins.Has_Structure method) export_to_cube() (abipy.core.fields.Density method) export_ur2() (abipy.waves.pwwave.PWWaveFunction method) (abipy.waves.wfkfile.WfkFile method) expose() (abipy.core.mixins.NotebookWriter method) (abipy.dynamics.analyzer.DiffusionDataList method) expose_ebands() (abipy.core.mixins.Has_ElectronBands method) expose_phbands() (abipy.core.mixins.Has_PhononBands method) expose_qpoints_gpairs() (abipy.electrons.tchim.TchimVsSus method) EXT (abipy.abio.outputs.AboRobot attribute) (abipy.dfpt.anaddbnc.AnaddbNcRobot attribute) (abipy.dfpt.ddb.DdbRobot attribute) (abipy.dynamics.hist.HistRobot attribute) (abipy.electrons.gw.SigresRobot attribute) (abipy.electrons.gwr.GwrRobot attribute) (abipy.electrons.optic.OpticRobot attribute) (abipy.electrons.psps.PspsRobot attribute) (abipy.eph.a2f.A2fRobot attribute) (abipy.eph.gkq.GkqRobot attribute) (abipy.eph.gpath.GpathRobot attribute) (abipy.eph.gstore.GstoreRobot attribute) (abipy.eph.gwan.GstoreRobot attribute) (abipy.eph.rta.RtaRobot attribute) (abipy.eph.sigeph.SigEPhRobot attribute) (abipy.eph.v1qavg.V1qAvgRobot attribute) (abipy.eph.vpq.VpqRobot attribute) (abipy.wannier90.abiwan.AbiwanRobot attribute) extcls_supporting_panel() (in module abipy.abilab) extend() (abipy.abio.inputs.MultiDataset method) extract_metadata() (abipy.flowtk.scheduler_error_parsers.AbstractErrorParser static method) extract_point_group() (in module abipy.core.skw) ExtxyzIOWriter (class in abipy.ml.extxyz_generator)

F

f (abipy.panels.oncvpsp_gui.Nlf attribute) FatBandsFile (class in abipy.electrons.fatbands) FatBandsFilePanel (class in abipy.panels.fatbands) FC_factor_approx() (abipy.lumi.deltaSCF.DeltaSCF method) fcc() (abipy.core.structure.Structure class method) fcfact (abipy.panels.oncvpsp_gui.OncvInput attribute) fcfact_dir (abipy.panels.oncvpsp_gui.OncvGui attribute) fcfact_num (abipy.panels.oncvpsp_gui.OncvGui attribute) fcfact_step (abipy.panels.oncvpsp_gui.OncvGui attribute) fermie (abipy.electrons.ebands.ElectronBands attribute) (abipy.electrons.lobster.CoxpFile attribute) fetch_tasks_to_run() (abipy.flowtk.launcher.PyLauncher method) fft() (abipy.core.func1d.Function1D method) fft_g2r() (abipy.core.mesh3d.Mesh3D method) fft_r2g() (abipy.core.mesh3d.Mesh3D method) FFTBenchmark (class in abipy.tools.fftprof) field_name (abipy.electrons.denpot.DensityNcFile attribute) (abipy.electrons.denpot.PotNcFile attribute) (abipy.electrons.denpot.VhartreeNcFile attribute) (abipy.electrons.denpot.VhxcNcFile attribute) (abipy.electrons.denpot.VxcNcFile attribute) File (class in abipy.flowtk.utils) file_with_ext_indir() (in module abipy.tools.iotools) filechildren (abipy.flowtk.nodes.FileNode property) filename (abipy.flowtk.nodes.HistoryRecord attribute) FileNode (class in abipy.flowtk.nodes) filepath (abipy.flowtk.nodes.Product property) (abipy.panels.nodes.FilePathSelect property) filepath_extract_differences() (in module abipy.tools.iotools) FilepathFixer (class in abipy.flowtk.utils) FilePathSelect (class in abipy.panels.nodes) filesfile_string (abipy.flowtk.tasks.AbinitTask property) (abipy.flowtk.tasks.AnaddbTask property) (abipy.flowtk.tasks.OpticTask property) filter_by_runlevel() (abipy.abio.inputs.MultiDataset method) filter_by_spgnum() (abipy.core.restapi.DatabaseStructures method) filter_by_tags() (abipy.abio.inputs.MultiDataset method) filter_sigma() (in module abipy.electrons.orbmag) final_energy (abipy.dynamics.hist.HistFile property) final_pressure (abipy.dynamics.hist.HistFile property) final_structure (abipy.abio.outputs.AbinitOutputFile property) (abipy.dynamics.hist.HistFile property) final_structures (abipy.abio.outputs.AbinitOutputFile property) finalize() (abipy.flowtk.effmass_works.FrohlichZPRFlow method) (abipy.flowtk.flows.Flow method) (abipy.flowtk.qha_2d.Qha2dFlow method) (abipy.flowtk.vzsisa.VzsisaFlow method) (in module abipy.scripts.abinp) finalized (abipy.flowtk.nodes.Node property) find() (abipy.core.kpoints.KpointList method) find_1den_files() (abipy.flowtk.utils.Directory method) find_1wf_files() (abipy.flowtk.utils.Directory method) find_closest() (abipy.core.kpoints.KpointList method) find_convindex() (in module abipy.tools.numtools) find_deadlocks() (abipy.flowtk.flows.Flow method) find_degs_sk() (in module abipy.tools.numtools) find_free_port() (in module abipy.tools.notebooks) find_ik_glob_kpoint() (abipy.eph.gstore.GstoreReader method) (abipy.eph.gwan.GwanReader method) find_iq_glob_qpoint() (abipy.eph.gstore.GstoreReader method) (abipy.eph.gwan.GwanReader method) find_kpoint_fileindex() (abipy.electrons.scr.ScrReader method) find_last_timden_file() (abipy.flowtk.utils.Directory method) find_little_group() (abipy.core.symmetries.AbinitSpaceGroup method) find_lparam() (abipy.panels.oncvpsp_gui.OncvInput method) find_mesh_index() (abipy.core.func1d.Function1D method) find_minimum() (abipy.dfpt.qha_2D.QHA_2D method) find_mu() (abipy.electrons.ebands.ElectronDos method) find_optconf() (abipy.flowtk.tasks.AbinitTask method) find_parent_with_ext() (abipy.flowtk.nodes.Node method) find_points_along_path() (abipy.core.kpoints.Kpath method) (in module abipy.core.kpoints) find_qpkinds() (abipy.electrons.gwr.GwrFile method) (abipy.eph.sigeph.SigEPhFile method) find_spec_nn() (in module abipy.ml.aseml) find_string() (abipy.ppcodes.oncv_parser.OncvParser method) find_tchim_qpoint() (abipy.electrons.tchim.TchimVsSus method) findname_in_hsym_stars() (abipy.core.structure.Structure method) finishWebPage() (in module abipy.tools.elate.elastic) finite_diff() (abipy.core.func1d.Function1D method) (abipy.core.kpoints.Kpath method) (in module abipy.tools.derivatives) FiniteDisplWork (class in abipy.flowtk.finitediff) FiniteEfieldWork (class in abipy.flowtk.finitediff) FiniteHfieldWork (class in abipy.flowtk.finitediff) FiniteStrainWork (class in abipy.flowtk.finitediff) fit_df (abipy.electrons.lruj.LrujResults attribute) fit_energies() (abipy.dfpt.qha.AbstractQHA method) fit_energies_vt() (abipy.dfpt.vzsisa.Vzsisa method) fit_forth() (abipy.dfpt.vzsisa.Vzsisa method) fit_time_start (abipy.dynamics.analyzer.DiffusionData attribute) fit_time_stop (abipy.dynamics.analyzer.DiffusionData attribute) fit_to_frequency() (abipy.dfpt.frozen_phonons.FrozenPhonon method) fit_to_structure() (abipy.dfpt.elastic.ElasticData method) fitted_frequencies (abipy.dfpt.qha.QHA3P property) fix_abicritical() (abipy.flowtk.flows.Flow method) (abipy.flowtk.tasks.AbinitTask method) (abipy.flowtk.tasks.OpticTask method) fix_atoms() (in module abipy.ml.aseml) fix_ofiles() (abipy.flowtk.tasks.RelaxTask method) fix_omp_num_threads() (in module abipy.tools.cli_parsers) fix_paths() (abipy.flowtk.utils.FilepathFixer method) fix_queue_critical() (abipy.flowtk.flows.Flow method) (abipy.flowtk.tasks.AbinitTask method) (abipy.flowtk.tasks.OpticTask method) flow (abipy.flowtk.launcher.PyFlowScheduler property) (abipy.flowtk.works.Work property) Flow (class in abipy.flowtk.flows) flow_debug_reset_tasks() (in module abipy.scripts.abirun) flow_main() (in module abipy.flowtk) flow_watch_status() (in module abipy.scripts.abirun) flowdir_wname_tname() (in module abipy.scripts.abirun) FlowMultiPageApp (class in abipy.panels.flows) FlowPanel (class in abipy.panels.flows) fm_symmops (abipy.core.symmetries.AbinitSpaceGroup property) Fold2Bloch (class in abipy.flowtk.wrappers) Fold2BlochNcfile (class in abipy.electrons.fold2bloch) fontsize (abipy.dfpt.qha.AbstractQmeshAnalyzer attribute) force_stats() (abipy.electrons.gsr.GsrFile method) forces (abipy.ml.aseml.AseResults attribute) (abipy.ml.relax_scanner.Entry attribute) format_dimensions() (abipy.abio.abivar_database.variables.Variable static method) format_list() (abipy.abio.variable.InputVariable method) format_list2d() (abipy.abio.variable.InputVariable method) format_scalar() (abipy.abio.variable.InputVariable method) formula (abipy.dynamics.analyzer.MdAnalyzer property) frac_bounds (abipy.core.kpoints.Kpath property) frac_coords (abipy.core.kpoints.Kpoint property) (abipy.core.kpoints.KpointList property) frac_coords1 (abipy.ml.relax_scanner.Pair attribute) frac_coords2 (abipy.ml.relax_scanner.Pair attribute) frac_coords_05_to_minus05() (in module abipy.embedding.utils_ifc) FrohlichZPRFlow (class in abipy.flowtk.effmass_works) from_abiml_dir() (abipy.dynamics.analyzer.MdAnalyzer class method) from_abiml_dirs() (abipy.dynamics.analyzer.MultiMdAnalyzer class method) from_abinit_file() (abipy.wannier90.win.Wannier90Input class method) from_abinit_run() (abipy.electrons.psps.PspsFile class method) (abipy.electrons.psps.PspsRobot class method) from_abinit_website() (abipy.flowtk.psrepos.JthRepo class method) from_abinit_yaml_file() (abipy.ml.aseml.MlRelaxer class method) from_abistring() (abipy.core.structure.Structure class method) from_abivars() (abipy.core.structure.Structure class method) from_abo_file() (abipy.abio.outputs.BerryPhasePolarization class method) from_ase_atoms() (abipy.core.structure.Structure class method) from_ase_results() (abipy.ml.aseml.AseResultsComparator class method) from_atoms() (abipy.ml.aseml.AseResults class method) from_atoms_and_calculator() (abipy.ml.relax_scanner.Entry class method) from_binary_string() (abipy.core.mixins.AbinitNcFile class method) (abipy.electrons.ebands.ElectronBands class method) from_chgcar_poscar() (abipy.core.fields.Density class method) from_cod_id() (abipy.core.structure.Structure class method) from_constant() (abipy.core.func1d.Function1D class method) from_cube() (abipy.core.fields.Density class method) from_cut3d_outfile() (abipy.electrons.charges.HirshfeldCharges class method) from_ddb() (abipy.dfpt.vsound.SoundVelocity class method) (abipy.eph.eph_plotter.EphPlotter class method) from_ddb_file() (abipy.ml.aseml.FrozenPhononMl class method) from_ddb_list() (abipy.dfpt.gruneisen.GrunsNcFile class method) from_ddb_phdos_files() (abipy.dfpt.vzsisa.Vzsisa class method) from_den_ddb_dvdb() (abipy.flowtk.works.GKKPWork class method) from_dict() (abipy.abio.decorators.LdaUDecorator class method) (abipy.abio.decorators.LexxDecorator class method) (abipy.abio.decorators.SmearingDecorator class method) (abipy.abio.decorators.SpinDecorator class method) (abipy.abio.decorators.XcDecorator class method) (abipy.abio.inputs.AbinitInput class method) (abipy.abio.inputs.AnaddbInput class method) (abipy.abio.inputs.AtdepInput class method) (abipy.abio.inputs.Cut3DInput class method) (abipy.abio.inputs.OpticInput class method) (abipy.abio.robots.Robot class method) (abipy.core.atom.NlkState method) (abipy.core.func1d.Function1D class method) (abipy.core.kpoints.KpointList class method) (abipy.electrons.ebands.ElectronBands class method) (abipy.flowtk.events.Correction class method) (abipy.flowtk.events.DilatmxErrorHandler class method) (abipy.flowtk.flows.Flow class method) (abipy.flowtk.nodes.HistoryRecord class method) (abipy.flowtk.nodes.NodeResults class method) (abipy.flowtk.tasks.ParalHints class method) (abipy.flowtk.tasks.TaskManager class method) from_dir() (abipy.abio.robots.Robot class method) (abipy.electrons.lobster.LobsterAnalyzer class method) (abipy.electrons.lobster.LobsterInput class method) from_dir_glob() (abipy.abio.robots.Robot class method) from_dirs() (abipy.abio.robots.Robot class method) from_file() (abipy.core.func1d.Function1D class method) (abipy.core.structure.Structure class method) (abipy.dfpt.anaddbnc.AnaddbNcFile class method) (abipy.dfpt.ddb.DdbFile class method) (abipy.dfpt.ddb.DynQuad class method) (abipy.dfpt.elastic.ElasticData class method) (abipy.dfpt.gruneisen.GrunsNcFile class method) (abipy.dfpt.ifc.InteratomicForceConstants class method) (abipy.dfpt.phonons.PhononBands class method) (abipy.dfpt.phtk.NonAnalyticalPh class method) (abipy.dfpt.raman.Raman class method) (abipy.dynamics.analyzer.ArrheniusEntry class method) (abipy.dynamics.hist.HistFile class method) (abipy.electrons.abitk.KmeshFile class method) (abipy.electrons.bse.MdfFile class method) (abipy.electrons.ebands.ElectronBands class method) (abipy.electrons.effmass_analyzer.EffMassAnalyzer class method) (abipy.electrons.eskw.EskwFile class method) (abipy.electrons.fatbands.FatBandsFile class method) (abipy.electrons.gsr.GsrFile class method) (abipy.electrons.gw.SigresFile class method) (abipy.electrons.gwr.GwrFile class method) (abipy.electrons.lobster.CoxpFile class method) (abipy.electrons.lobster.ICoxpFile class method) (abipy.electrons.lobster.LobsterDoscarFile class method) (abipy.electrons.lruj.LrujResults class method) (abipy.electrons.optic.OpticNcFile class method) (abipy.electrons.orbmag.OrbmagFile class method) (abipy.electrons.psps.PspsFile class method) (abipy.electrons.scissors.ScissorsBuilder class method) (abipy.electrons.scr.ScrFile class method) (abipy.eph.a2f.A2fFile class method) (abipy.eph.cumulant.CumulantEPhFile class method) (abipy.eph.gkq.GkqFile class method) (abipy.eph.gpath.GpathFile class method) (abipy.eph.gstore.GstoreFile class method) (abipy.eph.gwan.GwanFile class method) (abipy.eph.rta.RtaFile class method) (abipy.eph.sigeph.SigEPhFile class method) (abipy.eph.transportfile.TransportFile class method) (abipy.eph.vpq.VpqFile class method) (abipy.flowtk.abiinspect.Relaxation class method) (abipy.flowtk.abiinspect.ScfCycle class method) (abipy.flowtk.flows.Flow class method) (abipy.flowtk.nodes.Product class method) (abipy.flowtk.tasks.TaskManager class method) (abipy.iotools.visualizer.Visualizer class method) (abipy.ml.aseml.AseTrajectoryPlotter class method) (abipy.panels.oncvpsp_gui.OncvGui class method) (abipy.panels.oncvpsp_gui.OncvInput class method) (abipy.ppcodes.oncv_plotter.OncvPlotter class method) (abipy.ppcodes.ppgen.OncvGenerator class method) (abipy.tools.fftprof.FFTBenchmark class method) (abipy.tools.tensors.NLOpticalSusceptibilityTensor class method) (abipy.wannier90.abiwan.AbiwanFile class method)

from_filename() (abipy.core.atom.RadialFunction class method) from_filepath() (abipy.flowtk.works.ConducWork class method) from_filepaths() (abipy.panels.nodes.FilePathSelect class method) from_files() (abipy.abio.robots.Robot class method) (abipy.dfpt.ddb.DielectricTensorGenerator class method) (abipy.dfpt.qha.QHA class method) (abipy.dfpt.qha.QHA3P class method) (abipy.dfpt.qha.QHA3PF class method) (abipy.dfpt.qha_2D.QHA_2D class method) (abipy.dfpt.qha_general_stress.QHA_ZSISA class method) (abipy.electrons.charges.BaderCharges class method) (abipy.ppcodes.oncv_plotter.MultiOncvPlotter class method) (abipy.tools.plotting.GenericDataFilesPlotter class method) from_flow() (abipy.abio.robots.Robot class method) from_four_points_file() (abipy.lumi.deltaSCF.DeltaSCF class method) from_func() (abipy.core.func1d.Function1D class method) from_github() (abipy.flowtk.psrepos.OncvpspRepo class method) from_gs_input() (abipy.flowtk.abiphonopy.PhonopyGruneisenWork class method) (abipy.flowtk.abiphonopy.PhonopyWork class method) (abipy.flowtk.gruneisen.GruneisenWork class method) from_gsr_ddb_paths() (abipy.dfpt.qha_2D.QHA_2D class method) (abipy.dfpt.vzsisa.Vzsisa class method) from_gsr_phdos_files() (abipy.dfpt.vzsisa.Vzsisa class method) from_gstore() (abipy.eph.gstore.Gqk class method) (abipy.eph.gwan.Gqk class method) from_hist_file() (abipy.dynamics.analyzer.MdAnalyzer class method) from_hist_files() (abipy.dynamics.analyzer.MultiMdAnalyzer class method) from_input() (abipy.dynamics.cpx.Qe2Extxyz class method) (abipy.flowtk.tasks.AbinitTask class method) from_inputs() (abipy.abio.inputs.MultiDataset class method) (abipy.flowtk.flows.Flow class method) (abipy.flowtk.gs_works.EosWork class method) from_json_file() (abipy.abio.robots.Robot class method) (abipy.dfpt.qha_general_stress.QHA_ZSISA class method) (abipy.lumi.deltaSCF.DeltaSCF class method) from_json_files() (abipy.abio.robots.Robot class method) from_kppa() (abipy.core.kpoints.IrredZone class method) from_label_file_dict() (abipy.abio.robots.Robot class method) from_lammps_dir() (abipy.dynamics.analyzer.MdAnalyzer class method) from_lammps_dirs() (abipy.dynamics.analyzer.MultiMdAnalyzer class method) from_lammps_input() (abipy.dynamics.analyzer.MdAnalyzer class method) from_lammpstrj() (abipy.dynamics.analyzer.MdAnalyzer class method) from_mpi_omp_lists() (abipy.flowtk.tasks.ParalHints class method) from_mpid() (abipy.core.structure.Structure class method) (abipy.dfpt.ddb.DdbFile class method) (abipy.electrons.ebands.ElectronBands class method) from_mpid_list() (abipy.dfpt.ddb.DdbRobot class method) from_name() (abipy.iotools.visualizer.Visualizer class method) from_name_and_structure() (abipy.core.kpoints.Kpoint class method) from_names() (abipy.core.kpoints.Kpath class method) from_ncreader() (abipy.core.symmetries.AbinitSpaceGroup class method) (abipy.dfpt.elastic.ElasticData class method) (abipy.dfpt.phtk.NonAnalyticalPh class method) from_ngkpt() (abipy.core.kpoints.IrredZone class method) from_ngkpt_shifts() (abipy.electrons.abitk.KmeshFile class method) from_nlkap() (abipy.core.atom.NlkState class method) from_node() (abipy.flowtk.nodes.NodeResults class method) from_nscf_task() (abipy.flowtk.gw_works.ScreeningWork class method) from_objects() (abipy.dfpt.ddb.DielectricTensorGenerator class method) from_phbands() (abipy.dfpt.frozen_phonons.FrozenPhonon class method) from_phbst() (abipy.dfpt.vsound.SoundVelocity class method) from_phononwfkq_work() (abipy.flowtk.works.GKKPWork class method) from_phonopy_atoms() (abipy.core.structure.Structure class method) from_phonopy_files() (abipy.dfpt.vzsisa.Vzsisa class method) from_phonopy_instances() (abipy.embedding.embedding_ifc.Embedded_phonons class method) from_phonopy_phonons() (abipy.lumi.lineshape.Lineshape class method) from_phwork() (abipy.flowtk.works.ConducWork class method) from_pmg_bs() (abipy.dfpt.phonons.PhononBands class method) from_pyfile() (abipy.abio.abivar_database.variables.InputVariables class method) from_pyfiles() (abipy.abio.abivar_database.variables.VarDatabase class method) from_pymatgen() (abipy.electrons.ebands.ElectronBands class method) from_qe_input() (abipy.dynamics.analyzer.MdAnalyzer class method) from_qtype_and_id() (abipy.flowtk.qjobs.QueueJob static method) from_relax_file() (abipy.lumi.deltaSCF.DeltaSCF class method) from_scf_input() (abipy.flowtk.dfpt_flows.ConvBecsEpsFlow class method) (abipy.flowtk.dfpt_works.ElasticWork class method) (abipy.flowtk.effmass_works.EffMassAutoDFPTWork class method) (abipy.flowtk.effmass_works.EffMassDFPTWork class method) (abipy.flowtk.effmass_works.EffMassLineWork class method) (abipy.flowtk.effmass_works.FrohlichZPRFlow class method) (abipy.flowtk.eph_flows.EphPotFlow class method) (abipy.flowtk.eph_flows.GkqPathFlow class method) (abipy.flowtk.finitediff.FiniteDisplWork class method) (abipy.flowtk.finitediff.FiniteStrainWork class method) (abipy.flowtk.gs_works.EosWork class method) (abipy.flowtk.gwr_works.DirectDiagoWork class method) (abipy.flowtk.gwr_works.GWRChiCompareWork class method) (abipy.flowtk.qha_2d.Qha2dFlow class method) (abipy.flowtk.qha_2d.Qha2dWork class method) (abipy.flowtk.vzsisa.VzsisaFlow class method) (abipy.flowtk.vzsisa.VzsisaWork class method) (abipy.flowtk.works.BandStructureWork class method) (abipy.flowtk.works.PhononWork class method) (abipy.flowtk.zsisa.ZsisaFlow class method) (abipy.flowtk.zsisa.ZsisaWork class method) from_scf_input_ntaus() (abipy.flowtk.gwr_works.GWRRPAConvWork class method) from_scf_inputs() (abipy.flowtk.lumi_works.LumiWork class method) (abipy.flowtk.lumi_works.LumiWork_relaxations class method) (abipy.flowtk.lumi_works.LumiWorkFromRelax class method) from_scf_task() (abipy.flowtk.dfpt_works.NscfDdksWork class method) (abipy.flowtk.works.BecWork class method) (abipy.flowtk.works.DteWork class method) (abipy.flowtk.works.PhononWfkqWork class method) (abipy.flowtk.works.PhononWork class method) from_stream() (abipy.flowtk.abiinspect.Relaxation class method) (abipy.flowtk.abiinspect.ScfCycle class method) from_string() (abipy.abio.abivars.AbinitInputFile class method) (abipy.core.atom.AtomicConfiguration class method) (abipy.dfpt.ddb.DdbFile class method) (abipy.flowtk.nodes.Status class method) (abipy.flowtk.qjobs.JobStatus class method) (abipy.flowtk.tasks.TaskManager class method) (abipy.ml.aseml.CORRALGO class method) (abipy.panels.oncvpsp_gui.OncvInput class method) (abipy.ppcodes.ppgen.Status class method) from_structure() (abipy.core.symmetries.AbinitSpaceGroup class method) from_top() (abipy.ml.extxyz_generator.ExtxyzIOWriter class method) from_top_and_json_basename() (abipy.abio.robots.Robot class method) from_top_gsr() (abipy.ml.extxyz_generator.ExtxyzIOWriter class method) from_top_hist() (abipy.ml.extxyz_generator.ExtxyzIOWriter class method) from_top_vasprun() (abipy.ml.extxyz_generator.ExtxyzIOWriter class method) from_topdir() (abipy.ml.relax_scanner.RelaxScannerAnalyzer class method) from_traj() (abipy.ml.relax_scanner.Entry class method) from_traj_inds() (abipy.ml.aseml.AseResults class method) from_user_config() (abipy.flowtk.tasks.TaskManager class method) from_vaspruns() (abipy.dynamics.analyzer.MdAnalyzer class method) (abipy.dynamics.analyzer.MultiMdAnalyzer class method) from_vertices_and_names() (abipy.core.kpoints.Kpath class method) from_vloc_rcut_list() (abipy.electrons.psps.PspsRobot class method) from_vpq() (abipy.eph.vpq.Polaron class method) from_wfk_filepath() (abipy.flowtk.gw_works.ScreeningWork class method) from_wfkpath() (abipy.electrons.fold2bloch.Fold2BlochNcfile class method) from_work() (abipy.abio.robots.Robot class method) from_zsisa_flow() (abipy.flowtk.zsisa.ThermalRelaxWork class method) fromfftmesh() (abipy.core.gsphere.GSphere method) frozen_2phonon() (abipy.core.structure.Structure method) frozen_phonon() (abipy.core.structure.Structure method) FrozenPhonon (class in abipy.dfpt.frozen_phonons) FrozenPhononMl (class in abipy.ml.aseml) fs_viewer (abipy.panels.core.PanelWithElectronBands attribute) FULLBZ (abipy.abio.enums.WFK_TASK attribute) FullQueueError (class in abipy.flowtk.scheduler_error_parsers) func_name (abipy.flowtk.nodes.HistoryRecord attribute) Function1D (class in abipy.core.func1d) functions_pair (abipy.electrons.lobster.CoxpFile property) functions_pair_lorbitals (abipy.electrons.lobster.CoxpFile property) functions_pair_morbitals (abipy.electrons.lobster.CoxpFile property) fundamental_gaps (abipy.electrons.ebands.ElectronBands property) FWHM_1D() (abipy.lumi.deltaSCF.DeltaSCF method)

G

G0EW (abipy.abio.enums.GWR_TASK attribute) G0V (abipy.abio.enums.GWR_TASK attribute) G0W0 (abipy.abio.enums.GWR_TASK attribute) g0w0_convergence_inputs() (in module abipy.abio.factories) g0w0_flow() (in module abipy.flowtk.flows) g0w0_with_ppmodel_inputs() (in module abipy.abio.factories) G0W0WithQptdmFlow (class in abipy.flowtk.flows) G0W0Work (class in abipy.flowtk.works) g2 (abipy.eph.gstore.Gqk attribute) (abipy.eph.gwan.Gqk attribute) gamma() (abipy.core.kpoints.Kpoint class method) GAMMA_GW (abipy.abio.enums.GWR_TASK attribute) GarbageCollector (class in abipy.flowtk.nodes) gaussian() (in module abipy.tools.numtools) gaussians_dos() (in module abipy.electrons.fatbands) gc (abipy.flowtk.nodes.Node property) gen_id() (in module abipy.panels.core) generate() (abipy.abio.inputs.AbstractInput method) generate_born_deriv() (in module abipy.dfpt.converters) generate_deformations() (in module abipy.dfpt.deformation_utils) generate_deformations_volumic() (in module abipy.dfpt.deformation_utils) GenericDataFilePlotter (class in abipy.tools.plotting) GenericDataFilesPlotter (class in abipy.tools.plotting) get_2nd_ord_block_string() (in module abipy.dfpt.ddb) get_2nd_ord_dict() (abipy.dfpt.ddb.DdbFile method) get_a2_interpolator_state() (abipy.eph.vpq.Polaron method) get_a2f_qsamp() (abipy.eph.a2f.A2fFile method) get_a2f_view() (abipy.panels.a2f.A2fFilePanel method) get_a2ftr_qsamp() (abipy.eph.a2f.A2fFile method) get_abc() (abipy.dfpt.qha.AbstractQHA method) (abipy.dfpt.vzsisa.Vzsisa method) get_abi_string() (abipy.core.structure.Structure method) get_abifile_from_file_input() (abipy.panels.core.AbipyParameterized static method) get_abinb_workdir() (in module abipy.core.globals) get_abinit_template_cls_kwds() (abipy.panels.core.AbipyParameterized method) (in module abipy.panels.core) get_abinit_variables() (in module abipy.abio.abivars_db) get_abinitio_results() (abipy.ml.aseml.MlValidateWithAbinitio method) get_absg_kpoint() (abipy.eph.gkq.GkqFile method) get_acoustic_debye_temp() (abipy.dfpt.phonons.PhononDos method) get_alert_data_transfer() (abipy.panels.core.AbipyParameterized static method) get_aligned_energies_traj() (abipy.ml.aseml.AseResultsComparator method) get_all_d2de_scf_cycles() (abipy.abio.outputs.AbinitOutputFile method) get_all_gs_scf_cycles() (abipy.abio.outputs.AbinitOutputFile method) get_all_kindices() (abipy.core.kpoints.KpointList method) get_all_outdata_files_with_ext() (abipy.flowtk.works.Work method) get_all_registered_repos() (in module abipy.flowtk.psrepos) get_all_status() (abipy.flowtk.works.Work method) get_all_vnames() (abipy.abio.abivar_database.variables.InputVariables method) get_allvars() (abipy.abio.outputs.OutNcFile method) get_anaddb_variables() (in module abipy.abio.abivars_db) get_and_write_eosdata() (abipy.flowtk.gs_works.EosWork method) get_angles() (abipy.dfpt.qha.AbstractQHA method) (abipy.dfpt.vzsisa.Vzsisa method) get_arrhenius_nmtuples() (abipy.dynamics.analyzer.DiffusionDataList method) get_asr_dipdip_view() (abipy.panels.ddb.DdbFilePanel method) get_atdep_brav() (abipy.abio.inputs.AtdepInput static method) get_atdep_variables() (in module abipy.abio.abivars_db) get_atomic_levels_df() (abipy.ppcodes.oncv_parser.OncvParser method) get_atoms() (in module abipy.ml.aseml) get_atoms_with_frac_coords() (abipy.ml.relax_scanner.RelaxScanner method) get_atw() (abipy.electrons.arpes.ArpesPlotter method) get_available() (abipy.iotools.visualizer.Visualizer class method) get_ax3d_fig_plt() (in module abipy.tools.plotting) get_ax_fig_plt() (in module abipy.tools.plotting) get_axarray_fig_plt() (in module abipy.tools.plotting) get_b2_interpolator_state() (abipy.eph.vpq.Polaron method) get_baserobot_code_cells() (abipy.abio.robots.Robot method) get_becs_view() (abipy.panels.ddb.DdbFilePanel method) get_berry_phase_polarization() (abipy.abio.outputs.AbinitOutputFile method) get_block_for_qpoint() (abipy.dfpt.ddb.DdbFile method) get_BORN_lines() (in module abipy.dfpt.converters) get_bz2ibz_bz_points() (abipy.electrons.ebands.ElectronBands method) get_bz_interpolator_spin() (abipy.electrons.orbmag.OrbmagAnalyzer method) get_calculator() (abipy.ml.aseml.CalcBuilder method) get_cart_coords() (abipy.core.kpoints.KpointList method) get_chemview() (abipy.core.structure.Structure method) get_chi2_latex_label() (abipy.electrons.optic.OpticNcFile method) get_children() (abipy.flowtk.nodes.Node method) get_cif_string() (abipy.dfpt.msqdos.MsqDos method) (abipy.electrons.orbmag.OrbmagAnalyzer method) get_citations() (abipy.flowtk.psrepos.JthRepo method) (abipy.flowtk.psrepos.OncvpspRepo method) (abipy.flowtk.psrepos.PseudosRepo method) get_cluster_graph() (abipy.flowtk.utils.Dirviz method) get_coarse() (abipy.dfpt.ddb.DdbFile method) get_codevars() (in module abipy.abio.abivar_database.variables) get_collinear_mag() (abipy.electrons.ebands.ElectronBands method) get_compare_params_widgets() (abipy.panels.core.BaseRobotPanel method) get_completed_job_info() (in module abipy.flowtk.qutils) get_computed_entry() (abipy.electrons.gsr.GsrFile method) get_conductivity_data() (abipy.dynamics.analyzer.ArrheniusEntry method) get_conventional_standard_structure() (abipy.core.structure.Structure method) get_convergence_analyzer() (abipy.abio.robots.Robot method) get_coords_dataframe() (abipy.abio.robots.Robot method) get_crystaltk_view() (abipy.core.structure.Structure method) get_cumulant_skb() (abipy.eph.cumulant.CumulantEPhFile method) get_custodian_template() (in module abipy.flowtk.qutils) get_cv() (abipy.dfpt.phonons.PhononDos method) (in module abipy.dfpt.qha) get_cycles_view() (abipy.panels.outputs.AbinitOutputFilePanel method) get_data_nmtuple() (abipy.electrons.arpes.ArpesPlotter method) get_dataframe() (abipy.abio.outputs.AboRobot method) (abipy.dfpt.anaddbnc.AnaddbNcRobot method) (abipy.dfpt.ddb.DynQuad method) (abipy.dfpt.ddb.Zeffs method) (abipy.dfpt.msqdos.MsqDos method) (abipy.dfpt.phonons.PhononBands method) (abipy.dfpt.vsound.SoundVelocity method) (abipy.dynamics.analyzer.DiffusionDataList method) (abipy.dynamics.hist.HistRobot method) (abipy.electrons.ebands.ElectronBands method) (abipy.electrons.gw.SigresFile method) (abipy.electrons.gw.SigresRobot method) (abipy.electrons.gwr.GwrRobot method) (abipy.eph.a2f.A2fRobot method) (abipy.eph.gstore.Gqk method) (abipy.eph.gwan.Gqk method) (abipy.eph.sigeph.QpTempState method) (abipy.eph.sigeph.SigEPhFile method) (abipy.eph.sigeph.SigEPhRobot method) (abipy.flowtk.flows.Flow method) (abipy.flowtk.launcher.MultiFlowScheduler method) (abipy.flowtk.tasks.ParalHints method) (abipy.flowtk.works.Work method) (abipy.flowtk.zsisa.ZsisaResults method) (abipy.lumi.deltaSCF.DeltaSCF method) (abipy.tools.tensors.DielectricDataList method) (abipy.wannier90.abiwan.AbiwanRobot method) get_dataframe_atoms() (abipy.lumi.deltaSCF.DeltaSCF method) get_dataframe_sk() (abipy.electrons.gw.SigresFile method) (abipy.electrons.gwr.GwrFile method) (abipy.electrons.gwr.GwrRobot method) (abipy.eph.sigeph.SigEPhFile method) (abipy.eph.sigeph.SigEPhRobot method) get_dataframe_species() (abipy.lumi.deltaSCF.DeltaSCF method) get_dataframe_with_accuracies() (abipy.electrons.effmass_analyzer.Segment method) get_ddb_robot() (abipy.flowtk.dfpt_flows.ConvBecsEpsResults method) get_debl_widgets() (abipy.panels.oncvpsp_gui.OncvGui method) get_debug_view() (abipy.panels.nodes.NodeParameterized method) get_default() (abipy.abio.inputs.OpticInput method) get_dict4pandas() (abipy.core.atom.NlkState method) (abipy.core.structure.Structure method) (abipy.dfpt.phonons.PhononBands method) (abipy.electrons.ebands.ElectronBands method) (abipy.flowtk.zsisa.ThermalRelaxEntry method) (abipy.ml.aseml.AseResults method) (abipy.ml.relax_scanner.Pair method) get_dict_per_atom() (abipy.lumi.deltaSCF.DeltaSCF method) get_dict_per_specie() (abipy.lumi.deltaSCF.DeltaSCF method) get_dict_results() (abipy.lumi.deltaSCF.DeltaSCF method) get_differences() (abipy.abio.abivars.AbinitInputFile method) get_diffusion_data() (abipy.dynamics.analyzer.ArrheniusEntry method) get_diffusion_with_sigma() (abipy.dynamics.analyzer.Msdtt0 method) get_dims_and_vars_view() (abipy.panels.nodes.NodeParameterized method) get_dims_dataframe() (abipy.abio.outputs.AboRobot method) (abipy.core.mixins.AbinitNcFile method) (abipy.flowtk.flows.Flow method) get_dims_spginfo_dataframe() (abipy.abio.outputs.AbinitOutputFile method) get_dims_spginfo_dataset() (abipy.abio.outputs.AbinitOutputFile method) get_dirgaps_dataframe() (abipy.electrons.gwr.GwrFile method) (abipy.electrons.gwr.GwrRobot method) (abipy.eph.sigeph.SigEPhFile method) (abipy.eph.sigeph.SigEPhRobot method) get_displacements_on_phonon_supercell() (in module abipy.lumi.lineshape) get_dm() (in module abipy.dfpt.converters) get_dos_integrator() (abipy.electrons.fatbands.FatBandsFile method) get_dos_vs_qmesh_view() (abipy.panels.ddb.DdbFilePanel method) get_dvloc0_widgets() (abipy.panels.oncvpsp_gui.OncvGui method) get_dw_symbol() (abipy.dynamics.analyzer.MdAnalyzer method) get_dyn_mat_eigenvec() (in module abipy.dfpt.phtk) get_e0() (abipy.electrons.ebands.ElectronBands method) (abipy.electrons.ebands.ElectronDos method) get_e0mesh() (abipy.eph.sigeph.QpTempList method) get_ebands3d() (abipy.electrons.ebands.ElectronBands method) get_ebands_frame() (abipy.electrons.ebands.ElectronBandsPlotter method) get_ebands_from_file_input() (abipy.panels.core.AbipyParameterized method) get_ebands_kmesh() (abipy.panels.core.PanelWithElectronBands method) get_ebands_kpath() (abipy.panels.core.PanelWithElectronBands method) get_ebands_params() (abipy.core.mixins.Has_ElectronBands method) get_ebands_plotter() (abipy.dfpt.vzsisa.Vzsisa method) (abipy.eph.sigeph.TdepElectronBands method) get_ebands_plotter_widgets() (abipy.panels.core.PanelWithEbandsRobot method) get_edge_state() (abipy.electrons.ebands.ElectronBands method) get_edos() (abipy.core.mixins.Has_ElectronBands method) (abipy.core.skw.ElectronInterpolator method) (abipy.electrons.ebands.ElectronBands method) get_edos_plotter() (abipy.dfpt.vzsisa.Vzsisa method) (abipy.eph.sigeph.TdepElectronBands method) get_edos_plotter_widgets() (abipy.panels.core.PanelWithEbandsRobot method) get_effmass_analyzer() (abipy.electrons.ebands.ElectronBands method) get_effmass_line() (abipy.electrons.ebands.ElectronBands method) get_effmass_view() (abipy.panels.core.PanelWithElectronBands method) get_ejdos() (abipy.electrons.ebands.ElectronBands method) get_elastic() (abipy.flowtk.finitediff.StrainData method) get_elastic_dataframe() (abipy.dfpt.anaddbnc.AnaddbNcRobot method) get_elastic_df() (abipy.flowtk.finitediff.StrainData method) get_elastic_properties_dataframe() (abipy.dfpt.elastic.ElasticData method) get_elastic_tensor_dataframe() (abipy.dfpt.elastic.ElasticData method) get_elastic_view() (abipy.panels.ddb.DdbFilePanel method) get_elastic_voigt_dataframe() (abipy.dfpt.elastic.ElasticData method) get_elate_html() (abipy.dfpt.elastic.MyElasticTensor method) get_emesh_eminmax() (abipy.electrons.arpes.ArpesPlotter method) get_energy_step() (in module abipy.ml.tools) get_entropy() (abipy.dfpt.phonons.PhononDos method) (in module abipy.dfpt.qha) get_epilog() (in module abipy.scripts.abicheck) (in module abipy.scripts.abicomp) (in module abipy.scripts.abidoc) (in module abipy.scripts.abinp) (in module abipy.scripts.abiopen) (in module abipy.scripts.abips) (in module abipy.scripts.abirun) (in module abipy.scripts.abislurm) (in module abipy.scripts.abistruct) (in module abipy.scripts.abiview) (in module abipy.scripts.oncv) get_eps0_view() (abipy.panels.ddb.DdbFilePanel method) get_epsinf() (abipy.flowtk.finitediff.ElectricFieldData method) (abipy.panels.ddb.DdbFilePanel method) get_epsinf_data() (abipy.flowtk.finitediff.ElectricFieldData method) get_errs_view() (abipy.panels.tasks.TaskPanel method) get_event_handler_classes() (in module abipy.flowtk.events) get_events_view() (abipy.panels.nodes.NodeParameterized method) get_fd_emass_d2() (abipy.electrons.effmass_analyzer.Segment method) get_field_itemp() (abipy.eph.sigeph.QpTempList method) get_fields() (abipy.electrons.gw.QPState class method) (abipy.eph.sigeph.QpTempState class method) get_fields_for_plot() (abipy.electrons.gw.QPState class method) (abipy.eph.sigeph.QpTempState class method) get_fig_mlab() (in module abipy.display.mvtk) get_fig_plotly() (in module abipy.tools.plotting) get_figs_plotly() (in module abipy.tools.plotting) get_fileinput_section() (abipy.panels.core.AbipyParameterized static method) get_filepaths_and_exts() (abipy.flowtk.nodes.Dependency method) get_files_in_dir_view() (abipy.panels.nodes.NodeParameterized method) get_final_results_df() (abipy.eph.vpq.Polaron method) (abipy.eph.vpq.VpqRobot method) get_fit_gaps_vs_ecuteps() (abipy.electrons.gw.SigresRobot method) get_flow_and_status_by_nodeid() (abipy.flowtk.launcher.MultiFlowScheduler method) get_force_constants() (abipy.flowtk.finitediff.DisplData method) get_forces_dataframe() (abipy.ml.aseml.AseResultsComparator method) get_forces_on_phonon_supercell() (in module abipy.lumi.lineshape) get_free_energy() (abipy.dfpt.phonons.PhononDos method) (in module abipy.dfpt.qha) get_free_energy_vt() (abipy.dfpt.vzsisa.Vzsisa method) get_frozen_phonons() (abipy.dfpt.phonons.PhononBands method) get_fstats() (abipy.ml.aseml.AseResults method) (in module abipy.ml.aseml) get_fstats_dict() (abipy.dynamics.hist.HistFile method) get_g2q_interpolator_kpoint() (abipy.eph.gstore.Gqk method) (abipy.eph.gwan.Gqk method) get_g_qpt_kpt() (abipy.eph.gstore.Gqk method) (abipy.eph.gwan.Gqk method) get_G_t() (in module abipy.lumi.utils_lumi) get_gamma_freq_with_vec_abipy_fmt() (abipy.embedding.embedding_ifc.Embedded_phonons method) get_gaps_string() (abipy.electrons.ebands.ElectronBands method) get_gdf_at_qpt_kpt() (abipy.eph.gstore.Gqk method) (abipy.eph.gwan.Gqk method) get_gibbs_phvol() (abipy.dfpt.vzsisa.Vzsisa method) get_gnuk_average_spin() (abipy.eph.gpath.GpathReader method) get_gnuq_average_spin() (abipy.eph.gpath.GpathReader method) get_graphviz() (abipy.abio.abivar_database.variables.InputVariables method) (abipy.flowtk.flows.Flow method) get_graphviz_dirtree() (abipy.flowtk.nodes.Node method) get_graphviz_varname() (abipy.abio.abivar_database.variables.InputVariables method) get_graphviz_view() (abipy.panels.nodes.NodeParameterized method) get_gs_input() (abipy.panels.structure.StructurePanel method) get_h1mat() (abipy.waves.wfkfile.WfkFile method) get_highsym_datataframe() (abipy.core.kpoints.KpointList method) get_history_view() (abipy.panels.nodes.NodeParameterized method) (abipy.panels.oncvpsp_gui.OncvGui method) get_ifc_cartesian() (abipy.dfpt.ifc.InteratomicForceConstants method) get_ifc_local() (abipy.dfpt.ifc.InteratomicForceConstants method) get_ifcs_view() (abipy.panels.ddb.DdbFilePanel method) get_ifermi_dense_bs() (abipy.electrons.ebands.ElectronBands method) get_ifermi_fs() (abipy.electrons.ebands.ElectronBands method) get_ifermi_view() (abipy.panels.core.PanelWithElectronBands method) get_incoming_flows() (abipy.flowtk.launcher.MultiFlowScheduler method) get_info() (abipy.flowtk.qjobs.PbsProJob method) (abipy.flowtk.qjobs.QueueJob method) (abipy.flowtk.qjobs.SlurmJob method) get_initial_guess_ac() (abipy.dfpt.qha_2D.QHA_2D method) get_input() (in module abipy.tools.iotools) get_input_str() (abipy.ppcodes.base_parser.BaseParser method) (abipy.ppcodes.oncv_parser.OncvParser method) get_input_string() (abipy.core.mixins.AbinitNcFile method) get_inputs_view() (abipy.panels.tasks.TaskPanel method) get_installed_nn_names() (in module abipy.ml.aseml) get_installed_repos_and_root() (in module abipy.flowtk.psrepos) get_internal_energy() (abipy.dfpt.phonons.PhononDos method) get_internal_strain() (abipy.flowtk.finitediff.StrainData method) get_interpolated_ebands_plotter() (abipy.wannier90.abiwan.AbiwanRobot method) get_interpolator() (abipy.waves.pwwave.PWWaveFunction method) get_intr2j0() (abipy.core.atom.RadialFunction method) get_it_ts() (abipy.dynamics.analyzer.MdAnalyzer method) get_jsmol_view() (abipy.core.structure.Structure method) get_json_doc() (abipy.dfpt.msqdos.MsqDos method) get_json_status() (abipy.flowtk.launcher.MultiFlowScheduler method) get_k2kqg_map() (abipy.core.kpoints.KpointList method) get_kcoords_from_names() (abipy.core.structure.Structure method) get_key_pairs() (abipy.ml.aseml.AseResultsComparator method) get_kpath() (abipy.panels.structure.StructurePanel method) get_kpath_input_string() (abipy.core.structure.Structure method) get_kpoints_and_band_range_for_edges() (abipy.electrons.ebands.ElectronBands method) get_label_files_str() (abipy.abio.robots.Robot method) get_labelstyle_from_spin_pair() (abipy.electrons.lobster.CoxpFile method) get_labelstyle_from_spin_pair_orbs() (abipy.electrons.lobster.CoxpFile method) get_lattice_dataframe() (abipy.abio.robots.Robot method) get_lifetimes_boltztrap() (abipy.eph.sigeph.SigEPhFile method) get_linewidth_dos() (abipy.eph.sigeph.SigEPhFile method) get_linfit_results() (abipy.dynamics.analyzer.Msdtt0 method) get_linopt_latex_label() (abipy.electrons.optic.OpticNcFile static method) get_lnlist_for_type() (abipy.electrons.psps.PspsReader method) get_longitudinal_fraction() (abipy.dfpt.phonons.PhononBands method) get_lorentz_intensity() (abipy.dfpt.raman.Raman method) get_magnetization() (abipy.electrons.gsr.GsrFile method) get_main_text_outs_view() (abipy.panels.tasks.TaskPanel method) get_marker() (abipy.electrons.gw.SigresFile method) get_matching_dSCF_phonon_spcell() (in module abipy.lumi.lineshape) get_max_abs_data() (abipy.tools.numtools.BzRegularGridInterpolator method) get_max_nprocs() (in module abipy.tools.parallel) get_maxfreq_mode() (abipy.dfpt.phonons.PhononBands method) get_mcmillan_tc() (abipy.eph.a2f.A2f method) get_mdf() (abipy.electrons.bse.MdfFile method) get_mdf_robot() (abipy.flowtk.works.BseMdfWork method) get_message() (abipy.flowtk.nodes.HistoryRecord method) get_min_max_temp() (abipy.dynamics.analyzer.ArrheniusPlotter method) get_min_rc() (abipy.panels.oncvpsp_gui.OncvInput method) get_minfreq_mode() (abipy.dfpt.phonons.PhononBands method) get_mobility_mu() (abipy.eph.rta.RtaFile method) (abipy.eph.transportfile.TransportFile method) get_modes_intensities() (abipy.dfpt.raman.Raman method) get_moment() (abipy.eph.a2f.A2f method)

get_moment_nu() (abipy.eph.a2f.A2f method) get_mongo_info() (abipy.flowtk.flows.Flow method) get_mprester() (in module abipy.core.restapi) get_msdtt0_symbol_tmax() (abipy.dynamics.analyzer.MdAnalyzer method) (abipy.dynamics.analyzer.MultiMdAnalyzer method) get_msq_tmesh() (abipy.dfpt.msqdos.MsqDos method) get_mustar_from_tc() (abipy.eph.a2f.A2f method) get_ncfile_view() (abipy.core.mixins.AbinitNcFile method) (abipy.panels.core.NcFileViewer method) get_nelect() (abipy.core.fields.Density method) get_newnode_id() (in module abipy.flowtk.nodes) get_ngkpt_shiftk() (abipy.abio.inputs.AbinitInput method) get_ngl_view() (abipy.core.structure.Structure method) get_njobs_in_queue() (abipy.flowtk.flows.Flow method) (abipy.flowtk.tasks.TaskManager method) get_nodes() (abipy.flowtk.qjobs.QueueJob method) get_omlamb() (abipy.electrons.orbmag.OrbmagAnalyzer method) get_oncv_input() (abipy.panels.oncvpsp_gui.OncvGui method) get_oncvpsp_pseudos() (in module abipy.flowtk.psrepos) get_ordered_with_policy() (abipy.flowtk.tasks.ParalHints method) get_oscillator_dataframe() (abipy.dfpt.ddb.DielectricTensorGenerator method) get_outfile_view() (abipy.panels.outputs.AbinitOutputFilePanel method) get_output_file() (abipy.flowtk.tasks.AbinitTask method) get_oxi_state_decorated() (abipy.core.structure.Structure method) get_panel() (abipy.abio.outputs.AbinitOutputFile method) (abipy.core.structure.Structure method) (abipy.dfpt.ddb.DdbFile method) (abipy.dfpt.ddb.DdbRobot method) (abipy.dfpt.phonons.PhononBandsPlotter method) (abipy.dynamics.hist.HistFile method) (abipy.electrons.fatbands.FatBandsFile method) (abipy.electrons.gsr.GsrFile method) (abipy.eph.a2f.A2fFile method) (abipy.eph.sigeph.SigEPhFile method) (abipy.flowtk.flows.Flow method) (abipy.flowtk.tasks.AbinitTask method) (abipy.flowtk.works.Work method) (abipy.panels.a2f.A2fFilePanel method) (abipy.panels.ddb.CompareDdbWithMP method) (abipy.panels.ddb.DdbFilePanel method) (abipy.panels.ddb.DdbPanelWithFileInput method) (abipy.panels.ddb.DdbRobotPanel method) (abipy.panels.ddb.PanelWithFileInput method) (abipy.panels.ddb.RobotWithFileInput method) (abipy.panels.electrons.CompareEbandsWithMP method) (abipy.panels.electrons.SkwPanelWithFileInput method) (abipy.panels.fatbands.FatBandsFilePanel method) (abipy.panels.flows.FlowPanel method) (abipy.panels.gsr.GsrFilePanel method) (abipy.panels.gsr.GsrRobotPanel method) (abipy.panels.hist.HistFilePanel method) (abipy.panels.nodes.NodeParameterized method) (abipy.panels.oncvpsp_gui.OncvGui method) (abipy.panels.outputs.AbinitOutputFilePanel method) (abipy.panels.outputs.AbinitOutputFilePanelWithFileInput method) (abipy.panels.phonons.PhononBandsPlotterPanel method) (abipy.panels.sigeph.SigEPhFilePanel method) (abipy.panels.structure.InputFileGenerator method) (abipy.panels.structure.StructurePanel method) (abipy.panels.tasks.TaskPanel method) get_params_dataframe() (abipy.abio.robots.Robot method) (abipy.dynamics.analyzer.MultiMdAnalyzer method) get_params_dict() (abipy.dynamics.analyzer.MdAnalyzer method) get_parent_names() (abipy.abio.abivar_database.variables.Variable method) get_parents() (abipy.flowtk.nodes.Node method) get_parser() (in module abipy.flowtk.scheduler_error_parsers) (in module abipy.scripts.abicheck) (in module abipy.scripts.abicomp) (in module abipy.scripts.abidoc) (in module abipy.scripts.abinp) (in module abipy.scripts.abiopen) (in module abipy.scripts.abips) (in module abipy.scripts.abirun) (in module abipy.scripts.abislurm) (in module abipy.scripts.abistruct) (in module abipy.scripts.abiview) (in module abipy.scripts.oncv) get_path() (abipy.ml.aseml.MlBase method) get_peaks() (abipy.core.atom.RadialFunction method) get_peaks_df() (abipy.ppcodes.oncv_parser.OncvParser method) get_phbands_frame() (abipy.dfpt.phonons.PhononBandsPlotter method) get_phbands_params() (abipy.core.mixins.Has_PhononBands method) get_phbands_plotter() (abipy.dfpt.vzsisa.Vzsisa method) get_phbands_view() (abipy.panels.ddb.DdbFilePanel method) get_phdata_at_qpoint() (abipy.dfpt.ddb.DdbRobot method) get_phdos() (abipy.dfpt.phonons.PhononBands method) get_phdos_plotter() (abipy.dfpt.qha_general_stress.QHA_ZSISA method) (abipy.dfpt.vzsisa.Vzsisa method) get_phframe() (abipy.dfpt.phonons.PhbstFile method) get_phfreqs_stats_dict() (abipy.dfpt.phonons.PhononBands method) get_phmode() (abipy.dfpt.phonons.PhbstFile method) get_phonopy() (in module abipy.ml.ml_phonopy) get_phonopy_atoms() (abipy.core.structure.Structure method) get_phonopy_qha() (abipy.dfpt.qha.AbstractQHA method) get_piezo_voigt_dataframe() (abipy.dfpt.elastic.ElasticData method) get_piezoel() (abipy.flowtk.finitediff.ElectricFieldData method) get_piezoel_df() (abipy.flowtk.finitediff.ElectricFieldData method) get_piezoelectric_tensor_dataframe() (abipy.dfpt.elastic.ElasticData method) get_piezomag() (abipy.flowtk.finitediff.ZeemanData method) get_piezomag_df() (abipy.flowtk.finitediff.ZeemanData method) get_plot_ebands_view() (abipy.panels.core.PanelWithElectronBands method) get_plot_edos_view() (abipy.panels.core.PanelWithElectronBands method) get_plot_ifc() (abipy.dfpt.ifc.InteratomicForceConstants method) get_plotter() (abipy.dfpt.gruneisen.GrunsNcFile method) (abipy.ppcodes.oncv_parser.OncvParser method) get_plotter_with() (abipy.electrons.ebands.ElectronBands method) get_pn_serve_kwargs() (in module abipy.tools.cli_parsers) get_points_from_ebands() (abipy.electrons.gw.SigresFile method) get_powder_intensity() (abipy.dfpt.raman.Raman method) get_powder_lorentz_intensity() (abipy.dfpt.raman.Raman method) get_pseudos() (abipy.flowtk.psrepos.JthRepo method) (abipy.flowtk.psrepos.OncvpspRepo method) (abipy.flowtk.psrepos.PseudosRepo method) get_psp8_str() (abipy.ppcodes.oncv_parser.OncvParser method) get_pyscript() (abipy.abio.robots.Robot method) get_qcut_widgets() (abipy.panels.oncvpsp_gui.OncvGui method) get_qe_dataframe() (abipy.eph.gkq.GkqFile method) get_qha_2d() (abipy.flowtk.qha_2d.Qha2DData method) get_qp_array() (abipy.eph.sigeph.SigEPhFile method) get_qpcorr() (abipy.electrons.gw.SigresFile method) get_qpgap() (abipy.electrons.gw.SigresFile method) get_qpgaps_dataframe() (abipy.electrons.gw.SigresRobot method) get_qplist() (abipy.electrons.gw.SigresFile method) get_quadrupole_raw_dataframe() (abipy.dfpt.ddb.DdbFile method) get_quadrupoles_view() (abipy.panels.ddb.DdbFilePanel method) get_rc5_widgets() (abipy.panels.oncvpsp_gui.OncvGui method) get_rc_qcut_opt_view() (abipy.panels.oncvpsp_gui.OncvGui method) get_rc_widgets() (abipy.panels.oncvpsp_gui.OncvGui method) get_relaxation_analyzer() (abipy.dynamics.hist.HistFile method) get_repo_from_name() (in module abipy.flowtk.psrepos) get_repos_root() (in module abipy.flowtk.psrepos) get_results() (abipy.flowtk.flows.Flow method) (abipy.flowtk.nodes.FileNode method) (abipy.ppcodes.base_parser.BaseParser method) (abipy.ppcodes.oncv_parser.OncvParser method) get_rhomodel_widgets() (abipy.panels.oncvpsp_gui.OncvGui method) get_rpa_ene_dataframe() (abipy.electrons.gwr.GwrRobot method) get_rpa_ene_dict() (abipy.electrons.gwr.GwrFile method) get_sacct_info() (in module abipy.flowtk.qutils) get_same_tmesh() (abipy.eph.rta.RtaRobot method) get_sampling() (abipy.core.skw.ElectronInterpolator method) get_scissors_builder() (abipy.flowtk.tasks.SigmaTask method) get_script_str() (abipy.flowtk.launcher.ScriptEditor method) get_sigeph_skb() (abipy.eph.sigeph.SigEPhFile method) get_sigma_berend() (abipy.dynamics.analyzer.Msdtt0 method) get_sigma_skb_kpoint() (abipy.eph.sigeph.SigmaPhReader method) get_simple_manager() (abipy.flowtk.tasks.TaskManager class method) get_size() (in module abipy.tools.devtools) get_skw_ebands_kpath() (abipy.panels.core.PanelWithElectronBands method) get_skw_view() (abipy.panels.core.PanelWithElectronBands method) get_slurm_template() (in module abipy.flowtk.qutils) get_smallest_supercell() (abipy.core.structure.Structure method) get_software_stack() (abipy.panels.core.AbipyParameterized static method) get_sorted_structure_z() (abipy.core.structure.Structure method) get_spectral_functions() (abipy.electrons.fold2bloch.Fold2BlochNcfile method) get_spglib_hall_number() (abipy.core.symmetries.AbinitSpaceGroup method) get_spilling() (abipy.electrons.fatbands.FatBandsFile method) get_sqdt_iatom() (abipy.dynamics.analyzer.MdAnalyzer method) get_sqdt_symbol() (abipy.dynamics.analyzer.MdAnalyzer method) get_sql_rows_with_node_ids() (abipy.flowtk.launcher.MultiFlowScheduler method) get_stark() (abipy.core.skw.SkwInterpolator method) get_stark_dk1() (abipy.core.skw.SkwInterpolator method) get_stark_dk2() (abipy.core.skw.SkwInterpolator method) get_stat() (abipy.flowtk.utils.File method) get_stats() (abipy.flowtk.qjobs.QueueJob method) (abipy.flowtk.qjobs.SlurmJob method) get_status_view() (abipy.panels.nodes.NodeParameterized method) get_stress_dataframe() (abipy.ml.aseml.AseResultsComparator method) get_string() (abipy.dfpt.ddb.DdbFile method) get_structure_dataframes() (abipy.abio.robots.Robot method) get_structure_info() (abipy.panels.core.PanelWithStructure method) (in module abipy.panels.core) get_structure_view() (abipy.panels.core.PanelWithStructure method) get_structure_with_two_frac_coords() (abipy.ml.relax_scanner.RelaxScanner method) get_structures_labels_from_file() (in module abipy.ml.tools) get_structures_labels_from_files() (in module abipy.ml.tools) get_summary_view_for_abiobj() (abipy.panels.core.AbipyParameterized method) get_supported_extensions() (abipy.abio.robots.Robot class method) get_symb2coords_dataframe() (abipy.core.structure.Structure method) get_symbol2coords() (abipy.core.structure.Structure method) get_symbol2indices() (abipy.core.structure.Structure method) get_t_for_vols() (abipy.dfpt.qha.AbstractQHA method) get_task_scfcycles() (abipy.flowtk.flows.Flow method) get_task_view() (abipy.panels.flows.FlowPanel method) get_template_cls_from_name() (abipy.panels.core.AbipyParameterized static method) (in module abipy.panels.core) get_template_from_tabs() (abipy.panels.core.AbipyParameterized method) get_tensor() (abipy.dfpt.elastic.ElasticData method) (abipy.electrons.bse.MdfFile method) get_tensor_rank2_dataframe() (abipy.core.site_symmetries.SiteSymmetries method) get_thermal_expansion_coeff() (abipy.dfpt.qha.AbstractQHA method) (abipy.dfpt.vzsisa.Vzsisa method) get_thermal_expansion_coeff_4th() (abipy.dfpt.vzsisa.Vzsisa method) get_thermodynamic_properties() (abipy.dfpt.qha.AbstractQHA method) (abipy.dfpt.qha.QHA method) (abipy.dfpt.qha.QHA3P method) (abipy.dfpt.qha.QHA3PF method) (abipy.dfpt.vzsisa.Vzsisa method) get_time_dataframe() (abipy.abio.outputs.AboRobot method) get_timer() (abipy.abio.outputs.AbinitTextFile method) get_title() (abipy.eph.vpq.Polaron method) get_trans_vect() (abipy.core.structure.Structure method) get_tstress() (abipy.dfpt.qha_general_stress.QHA_ZSISA method) get_unstable_modes() (abipy.dfpt.phonons.PhononBands method) get_upf_str() (abipy.ppcodes.oncv_parser.OncvParser method) get_value() (abipy.abio.variable.InputVariable method) (abipy.electrons.orbmag.OrbmagAnalyzer method) get_vars_dataframe() (abipy.abio.inputs.MultiDataset method) (abipy.flowtk.nodes.Node method) get_vartabs_html() (abipy.abio.abivar_database.variables.InputVariables method) get_version_endpoints() (abipy.abio.abivar_database.variables.VarDatabase method) get_vib_free_energies() (abipy.dfpt.qha.AbstractQHA method) (abipy.dfpt.qha.QHA method) (abipy.dfpt.qha.QHA3P method) (abipy.dfpt.qha.QHA3PF method) (abipy.dfpt.qha_2D.QHA_2D method) (abipy.dfpt.qha_general_stress.QHA_ZSISA method) get_voigt_dataframe() (abipy.dfpt.elastic.ElasticData method) (abipy.dfpt.elastic.MyElasticTensor method) (abipy.dfpt.elastic.MyPiezoTensor method) get_voigt_stress() (abipy.ml.aseml.AseResults method) get_vol_at_t() (abipy.dfpt.qha.AbstractQHA method) get_vsound_view() (abipy.panels.ddb.DdbFilePanel method) get_vzsisa() (abipy.flowtk.vzsisa.VzsisaResults method) get_w_symbol() (abipy.electrons.fatbands.FatBandsFile method) get_wave() (abipy.waves.wfkfile.WfkFile method) get_wl_atom() (abipy.electrons.fatbands.FatBandsFile method) get_wl_symbol() (abipy.electrons.fatbands.FatBandsFile method) get_workdir() (in module abipy.core.globals) get_wyckoff_dataframe() (abipy.core.site_symmetries.SiteSymmetries method) get_yvals_item_abifiles() (abipy.abio.robots.Robot static method) get_zero_point_energy() (in module abipy.dfpt.qha) getattr_alleq() (abipy.abio.robots.Robot method) getattrd() (in module abipy.tools.duck) getattrs_alleq() (abipy.abio.robots.Robot method) getsize() (abipy.flowtk.utils.File method) gibbs (abipy.dfpt.qha_general_stress.ThermalData attribute) gibbs_atom (abipy.flowtk.zsisa.ThermalRelaxEntry attribute) gkk_filepath (abipy.flowtk.tasks.AnaddbTask property) GKKPWork (class in abipy.flowtk.works) GkqFile (class in abipy.eph.gkq) GkqPathFlow (class in abipy.flowtk.eph_flows) GkqReader (class in abipy.eph.gkq) GkqRobot (class in abipy.eph.gkq) glob_nk (abipy.eph.gstore.Gqk attribute) (abipy.eph.gwan.Gqk attribute) glob_nq (abipy.eph.gstore.Gqk attribute) (abipy.eph.gwan.Gqk attribute) glr_frohlich() (in module abipy.eph.common) gmods (abipy.core.mesh3d.Mesh3D property) gnuplot() (abipy.ppcodes.oncv_parser.OncvParser method) GpathFile (class in abipy.eph.gpath) GpathReader (class in abipy.eph.gpath) GpathRobot (class in abipy.eph.gpath) Gqk (class in abipy.eph.gstore) (class in abipy.eph.gwan) gqk_spin (abipy.eph.gstore.GstoreFile property) graphviz_imshow() (abipy.flowtk.flows.Flow method) GrepResults (class in abipy.ppcodes.oncv_parser) grid (abipy.core.kpoints.Ktables attribute) gridfs_files (abipy.flowtk.nodes.NodeResults property) GridFsFile (class in abipy.flowtk.nodes) gridplot() (abipy.dfpt.phonons.PhononBandsPlotter method) (abipy.dfpt.phonons.PhononDosPlotter method) (abipy.dynamics.hist.HistRobot method) (abipy.electrons.ebands.ElectronBandsPlotter method) (abipy.electrons.ebands.ElectronDosPlotter method) gridplot_a2f() (abipy.eph.a2f.A2fRobot method) gridplot_psgens() (abipy.panels.oncvpsp_gui.OncvGui method) gridplot_with_hue() (abipy.dfpt.phonons.PhononBandsPlotter method) gridplotly() (abipy.dfpt.phonons.PhononBandsPlotter method) (abipy.dfpt.phonons.PhononDosPlotter method) (abipy.electrons.ebands.ElectronBandsPlotter method) (abipy.electrons.ebands.ElectronDosPlotter method) GroundStateScfCycle (class in abipy.flowtk.abiinspect) group_and_sortby() (abipy.abio.robots.Robot method) group_by_varset() (abipy.abio.abivar_database.variables.InputVariables method) groupby_first_letter() (abipy.abio.abivar_database.variables.InputVariables method) groupby_status() (abipy.flowtk.flows.Flow method) (abipy.flowtk.launcher.MultiFlowScheduler method) groupby_task_class() (abipy.flowtk.flows.Flow method) groupby_work_class() (abipy.flowtk.flows.Flow method) grouper() (in module abipy.tools.numtools) grun_vals_finite_differences() (abipy.dfpt.gruneisen.GrunsNcFile method) GruneisenWork (class in abipy.flowtk.gruneisen) GrunsNcFile (class in abipy.dfpt.gruneisen) GrunsReader (class in abipy.dfpt.gruneisen) gs_input() (in module abipy.abio.factories) GsMl (class in abipy.ml.aseml) GSphere (class in abipy.core.gsphere) gspheres (abipy.waves.wfkfile.WfkFile property) gsr_bo_path (abipy.flowtk.zsisa.ZsisaResults attribute) gsr_path (abipy.flowtk.zsisa.ThermalRelaxEntry attribute) gsr_relax_ebands_paths (abipy.flowtk.qha_2d.Qha2DData attribute) (abipy.flowtk.vzsisa.VzsisaResults attribute) (abipy.flowtk.zsisa.ZsisaResults attribute) gsr_relax_edos_paths (abipy.flowtk.qha_2d.Qha2DData attribute) (abipy.flowtk.vzsisa.VzsisaResults attribute) (abipy.flowtk.zsisa.ZsisaResults attribute) gsr_relax_entries (abipy.flowtk.qha_2d.Qha2DData attribute) (abipy.flowtk.vzsisa.VzsisaResults attribute) gsr_relax_paths (abipy.flowtk.qha_2d.Qha2DData attribute) (abipy.flowtk.vzsisa.VzsisaResults attribute) (abipy.flowtk.zsisa.ZsisaResults attribute) gsr_relax_volumes_ang3 (abipy.flowtk.vzsisa.VzsisaResults attribute) GsrFile (class in abipy.electrons.gsr) GsrFilePanel (class in abipy.panels.gsr) GsrRobotPanel (class in abipy.panels.gsr) GSTATE (abipy.abio.enums.RUNL attribute) gstore (abipy.eph.gstore.Gqk attribute) (abipy.eph.gwan.Gqk attribute) GstoreFile (class in abipy.eph.gstore) GstoreReader (class in abipy.eph.gstore) GstoreRobot (class in abipy.eph.gstore) (class in abipy.eph.gwan) guessed_ngqpt (abipy.dfpt.ddb.DdbFile property) gvals (abipy.eph.gstore.Gqk attribute) (abipy.eph.gwan.Gqk attribute) gvals_qibz (abipy.dfpt.gruneisen.GrunsNcFile property) gvals_qibz_finite_differences() (abipy.dfpt.gruneisen.GrunsNcFile method) gvecs (abipy.core.gsphere.GSphere property) (abipy.core.mesh3d.Mesh3D property) GwanFile (class in abipy.eph.gwan) GwanReader (class in abipy.eph.gwan) GWLS (abipy.abio.enums.RUNL attribute) gwnlf_mdf (abipy.electrons.bse.MdfFile property) GWR (abipy.abio.enums.RUNL attribute) gwr_path (abipy.flowtk.tasks.GwrTask property) GWR_TASK (class in abipy.abio.enums) GWRChiCompareWork (class in abipy.flowtk.gwr_works) GwrFile (class in abipy.electrons.gwr) GwrRobot (class in abipy.electrons.gwr) GWRRPAConvWork (class in abipy.flowtk.gwr_works) GWRSigmaConvWork (class in abipy.flowtk.gwr_works) GwrTask (class in abipy.flowtk.tasks)

H

h (abipy.core.func1d.Function1D property) H (abipy.flowtk.finitediff.PertKind attribute) handle_ase_md_log() (in module abipy.scripts.abiopen) handle_ase_traj() (in module abipy.scripts.abiopen) handle_csv() (in module abipy.scripts.abiopen) handle_flow_exception() (abipy.flowtk.launcher.MultiFlowScheduler method) handle_input_event() (abipy.flowtk.events.DilatmxErrorHandler method) handle_json() (in module abipy.scripts.abiopen) handle_object() (in module abipy.scripts.abiopen) handle_overwrite() (in module abipy.scripts.abiview) handle_task_event() (abipy.flowtk.events.DilatmxErrorHandler method) handle_timeout() (abipy.tools.context_managers.Timeout method) handle_wt() (abipy.panels.flows.FlowMultiPageApp method) has_a2ftr (abipy.eph.a2f.A2fFile property) has_abi_spacegroup (abipy.core.structure.Structure property) has_abiext() (abipy.flowtk.utils.Directory method) has_at_least_one_atomic_perturbation() (abipy.dfpt.ddb.DdbFile method) has_bec_terms() (abipy.dfpt.ddb.DdbFile method) has_bzmesh (abipy.electrons.ebands.ElectronBands property) has_bzpath (abipy.electrons.ebands.ElectronBands property) has_chrooted (abipy.flowtk.flows.Flow property) has_different_structures() (abipy.abio.robots.Robot method) (abipy.flowtk.works.Work method) has_direction() (abipy.dfpt.phtk.NonAnalyticalPh method) has_elastic (abipy.flowtk.zsisa.ZsisaResults property) has_elastic_data (abipy.dfpt.anaddbnc.AnaddbNcFile property) (abipy.dfpt.anaddbnc.AnaddbNcRobot property) Has_ElectronBands (class in abipy.core.mixins) has_eliashberg_function (abipy.eph.sigeph.SigEPhFile property) has_epsinf_terms() (abipy.dfpt.ddb.DdbFile method) has_full_bz (abipy.electrons.orbmag.OrbmagAnalyzer property) Has_Header (class in abipy.core.mixins) has_ibte (abipy.eph.rta.RtaFile property) has_internalstrain_terms() (abipy.dfpt.ddb.DdbFile method) has_j (abipy.core.atom.QState property) has_kmesh (abipy.eph.sigeph.TdepElectronBands property) has_kpath (abipy.eph.sigeph.TdepElectronBands property) has_leo (abipy.electrons.optic.OpticNcFile property) has_libxc (abipy.flowtk.tasks.AbinitBuild attribute) has_linewidths (abipy.dfpt.phonons.PhononBands property) (abipy.electrons.ebands.ElectronBands property) has_linopt (abipy.electrons.optic.OpticNcFile property) has_lo_to_data() (abipy.dfpt.ddb.DdbFile method) has_mandatory_variables() (abipy.abio.inputs.AtdepInput method) has_maxw (abipy.eph.v1qavg.V1qAvgFile property) has_metallic_scheme (abipy.electrons.ebands.ElectronBands property) has_mpi (abipy.flowtk.tasks.AbinitBuild attribute) has_mpiio (abipy.flowtk.tasks.AbinitBuild attribute) has_multi_structures (abipy.abio.abivars.AbinitInputFile property) has_netcdf (abipy.flowtk.tasks.AbinitBuild attribute) has_node_failures (abipy.flowtk.qjobs.QueueJob property) has_nucdipmom (abipy.electrons.orbmag.OrbmagAnalyzer property) has_omp (abipy.flowtk.tasks.AbinitBuild attribute) (abipy.flowtk.tasks.TaskManager property) Has_PhononBands (class in abipy.core.mixins) has_piezoelectric_data (abipy.dfpt.anaddbnc.AnaddbNcFile property) has_piezoelectric_terms() (abipy.dfpt.ddb.DdbFile method) has_qpoint() (abipy.dfpt.ddb.DdbFile method) has_quadrupole_terms() (abipy.dfpt.ddb.DdbFile method)

has_queue (abipy.flowtk.tasks.TaskManager property) has_remote_server (abipy.panels.core.AbipyParameterized attribute) has_s (abipy.core.atom.QState property) has_same_final_structures (abipy.abio.outputs.AbinitOutputFile property) has_same_formula() (abipy.dfpt.phonons.PhononBandsPlotter method) has_same_initial_structures (abipy.abio.outputs.AbinitOutputFile property) has_same_mesh() (abipy.core.func1d.Function1D method) has_same_structure() (abipy.dfpt.ddb.ZeffsList method) (abipy.tools.tensors.DielectricDataList method) has_same_structures (abipy.abio.inputs.MultiDataset property) has_same_system() (abipy.dynamics.analyzer.MultiMdAnalyzer method) has_scattering_wfs (abipy.ppcodes.oncv_parser.OncvParser property) has_scheduler (abipy.flowtk.flows.Flow property) has_shg (abipy.electrons.optic.OpticNcFile property) has_spectral_function (abipy.electrons.gw.SigresFile property) (abipy.eph.sigeph.SigEPhFile property) has_strain_terms() (abipy.dfpt.ddb.DdbFile method) Has_Structure (class in abipy.core.mixins) has_thermal_expansion (abipy.flowtk.zsisa.ZsisaResults property) has_timerev (abipy.core.symmetries.AbinitSpaceGroup property) has_timrev (abipy.electrons.ebands.ElectronBands property) has_vasp_inputs() (abipy.ml.relax_scanner.RelaxScannerAnalyzer method) has_zero_dynamical_quadrupoles (abipy.core.structure.Structure property) hasattrd() (in module abipy.tools.duck) HasPickleIO (class in abipy.tools.serialization) HATCH (abipy.abio.robots.Robot attribute) (abipy.electrons.gwr.GwrRobot attribute) have_disentangled_spin (abipy.wannier90.abiwan.AbiwanFile property) HDIAGO (abipy.abio.enums.GWR_TASK attribute) HDIAGO_FULL (abipy.abio.enums.GWR_TASK attribute) hdr (abipy.core.mixins.Has_Header property) header (abipy.dfpt.ddb.DdbFile property) herald() (in module abipy.scripts.abiml) hints (abipy.ppcodes.oncv_parser.OncvParser property) hirshfeld() (abipy.abio.inputs.Cut3DInput class method) hirshfeld_from_fhi_path() (abipy.abio.inputs.Cut3DInput class method) HirshfeldCharges (class in abipy.electrons.charges) hist_filepath (abipy.flowtk.tasks.AtdepTask property) HistFile (class in abipy.dynamics.hist) HistFilePanel (class in abipy.panels.hist) history (abipy.flowtk.abiinspect.Relaxation property) history_idx (abipy.panels.oncvpsp_gui.OncvGui attribute) HistoryRecord (class in abipy.flowtk.nodes) histplot() (abipy.ml.aseml.AseMdLog method) (abipy.ml.relax_scanner.RelaxScannerAnalyzer method) HistReader (class in abipy.dynamics.hist) HistRobot (class in abipy.dynamics.hist) homo_sk() (abipy.electrons.ebands.ElectronBands method) homos (abipy.electrons.ebands.ElectronBands property) hsym_kpath (abipy.core.structure.Structure property) hsym_kpoints (abipy.core.structure.Structure property) hsym_stars (abipy.core.structure.Structure property) html_link() (abipy.abio.abivar_database.variables.Variable method) (abipy.abio.inputs.OpticVar method) html_with_clipboard_btn() (abipy.panels.core.AbipyParameterized static method) HtmlDiff (class in abipy.tools.devtools) HTMLwithClipboardBtn (class in abipy.panels.core) HueGroup (class in abipy.abio.robots) hwan (abipy.wannier90.abiwan.AbiwanFile property) HWanR (class in abipy.wannier90.abiwan)

I

i_closest_gridpoints() (abipy.core.mesh3d.Mesh3D method) iatom (abipy.flowtk.finitediff.Perturbation attribute) iatoms_with_symbol() (abipy.dynamics.analyzer.MdAnalyzer method) ibz (abipy.core.kpoints.Ktables attribute) ibz2kcalc (abipy.eph.sigeph.SigEPhFile property) icmod (abipy.panels.oncvpsp_gui.OncvInput attribute) ICoxpFile (class in abipy.electrons.lobster) idir_from_direction() (abipy.ml.aseml.AseResultsComparator method) idos (abipy.dfpt.phonons.PhononDos property) ieta0 (abipy.dfpt.frozen_phonons.FrozenPhonon property) iexc (abipy.panels.oncvpsp_gui.OncvInput attribute) (abipy.ppcodes.oncv_parser.OncvParser attribute) ifc (abipy.dfpt.anaddbnc.AnaddbNcFile attribute) (abipy.dfpt.anaddbnc.AnaddbNcFile property) ifc() (abipy.abio.inputs.AnaddbInput class method) ifc_cart_coord_ewald (abipy.dfpt.ifc.InteratomicForceConstants property) ifc_local_coord (abipy.dfpt.ifc.InteratomicForceConstants property) ifc_local_coord_ewald (abipy.dfpt.ifc.InteratomicForceConstants property) ifc_local_coord_short_range (abipy.dfpt.ifc.InteratomicForceConstants property) ifc_yscale (abipy.panels.ddb.PanelWithAnaddbParams attribute) ifermi_eref (abipy.panels.core.PanelWithElectronBands attribute) ifermi_interpolation_factor (abipy.panels.core.PanelWithElectronBands attribute) ifermi_offset_eV (abipy.panels.core.PanelWithElectronBands attribute) ifermi_plot_type (abipy.panels.core.PanelWithElectronBands attribute) ifermi_wigner_seitz (abipy.panels.core.PanelWithElectronBands attribute) ifermi_with_velocities (abipy.panels.core.PanelWithElectronBands attribute) ifft() (abipy.core.func1d.Function1D method) iflat() (in module abipy.tools.numtools) iflat_nodes() (abipy.flowtk.flows.Flow method) iflat_tasks() (abipy.flowtk.flows.Flow method) iflat_tasks_wti() (abipy.flowtk.flows.Flow method) ifromr() (abipy.core.atom.RadialFunction method) imag (abipy.core.func1d.Function1D property) imag_fan0 (abipy.eph.sigeph.QpTempState property) imag_qpe (abipy.electrons.gw.QPState property) (abipy.eph.sigeph.QpTempState property) imag_sig0 (abipy.eph.sigeph.QpTempState property) in_notebook() (in module abipy.core.globals) in_spectator_mode (abipy.flowtk.nodes.Node property) increase_cpus() (abipy.flowtk.scheduler_error_parsers.CorrectorProtocolScheduler method) increase_mem() (abipy.flowtk.scheduler_error_parsers.CorrectorProtocolScheduler method) (abipy.flowtk.tasks.TaskManager method) increase_ncpus() (abipy.flowtk.tasks.TaskManager method) increase_resources() (abipy.flowtk.tasks.TaskManager method) increase_time() (abipy.flowtk.scheduler_error_parsers.CorrectorProtocolScheduler method) (abipy.flowtk.tasks.TaskManager method) indent() (in module abipy.tools.decorators) index() (abipy.core.gsphere.GSphere method) (abipy.core.kpoints.KpointList method) index1 (abipy.ml.relax_scanner.Pair attribute) index2 (abipy.ml.relax_scanner.Pair attribute) index_direction() (abipy.dfpt.phtk.NonAnalyticalPh method) index_key() (abipy.dynamics.analyzer.ArrheniusPlotter method) index_tmax (abipy.dynamics.analyzer.Msdtt0 attribute) inds_6d (abipy.flowtk.zsisa.ZsisaResults attribute) inds_of_keys() (abipy.ml.aseml.AseResultsComparator method) indsym (abipy.core.structure.Structure property) infinite_flow() (in module abipy.flowtk.mocks) InfiniteFlow (class in abipy.flowtk.mocks) info (abipy.abio.abivar_database.variables.Variable property) (abipy.dynamics.cpx.Key attribute) (abipy.eph.vpq.Entry attribute) (abipy.flowtk.nodes.Dependency property) (abipy.flowtk.tasks.AbinitBuild attribute) info() (abipy.flowtk.nodes.NodeHistory method) info_str (abipy.panels.ddb.CompareDdbWithMP attribute) (abipy.panels.ddb.DdbPanelWithFileInput attribute) (abipy.panels.ddb.PanelWithFileInput attribute) (abipy.panels.ddb.PanelWithStructureInput attribute) (abipy.panels.ddb.RobotWithFileInput attribute) (abipy.panels.electrons.CompareEbandsWithMP attribute) (abipy.panels.electrons.SkwPanelWithFileInput attribute) (abipy.panels.outputs.AbinitOutputFilePanelWithFileInput attribute) (abipy.panels.structure.InputFileGenerator attribute) init_counter() (in module abipy.flowtk.nodes) initial_structure (abipy.abio.outputs.AbinitOutputFile property) (abipy.dynamics.hist.HistFile property) (abipy.flowtk.vzsisa.VzsisaResults attribute) initial_structures (abipy.abio.outputs.AbinitOutputFile property) inodes (abipy.core.atom.RadialFunction property) input_from_editor() (in module abipy.tools.iotools) InputDecoratorError InputFileGenerator (class in abipy.panels.structure) InputVariable (class in abipy.abio.variable) InputVariables (class in abipy.abio.abivar_database.variables) insert_a_inbox() (abipy.eph.vpq.Polaron method) insert_b_inbox() (abipy.eph.vpq.Polaron method) insert_block() (abipy.dfpt.ddb.DdbFile method) insert_inbox() (abipy.electrons.orbmag.OrbmagAnalyzer method) inspect() (abipy.flowtk.flows.Flow method) (abipy.flowtk.tasks.PhononTask method) (abipy.flowtk.tasks.RelaxTask method) (abipy.flowtk.tasks.ScfTask method) install() (abipy.flowtk.psrepos.PseudosRepo method) install_config_files() (in module abipy.abilab) install_event_handlers() (abipy.flowtk.nodes.Node method) install_nn_names() (in module abipy.ml.aseml) integral() (abipy.core.atom.RadialFunction method) (abipy.core.func1d.Function1D method) integral3d() (abipy.core.atom.RadialFunction method) integral_value (abipy.core.func1d.Function1D property) integrate() (abipy.core.mesh3d.Mesh3D method) InteratomicForceConstants (class in abipy.dfpt.ifc) internal_link() (abipy.abio.abivar_database.variables.Variable method) interp_kpts() (abipy.core.skw.ElectronInterpolator method) interp_kpts_and_enforce_degs() (abipy.core.skw.ElectronInterpolator method) interpolate() (abipy.electrons.ebands.ElectronBands method) (abipy.electrons.gw.SigresFile method) (abipy.electrons.gwr.GwrFile method) (abipy.eph.sigeph.SigEPhFile method) interpolate_ebands() (abipy.wannier90.abiwan.AbiwanFile method)

inv_vectors (abipy.core.mesh3d.Mesh3D property) inverse() (abipy.core.symmetries.LatticeRotation method) inverse_participation_ratio() (in module abipy.embedding.utils_ifc) InverseDielectricFunction (class in abipy.electrons.scr) ion_ioncell_relax_and_ebands_input() (in module abipy.abio.factories) ion_ioncell_relax_input() (in module abipy.abio.factories) ionic (abipy.abio.outputs.BerryPhasePolarization attribute) ions (abipy.ml.aseml.RX_MODE attribute) IonsMode (class in abipy.flowtk.finitediff) ipath_from_ext() (abipy.flowtk.works.Work method) ipv0 (abipy.flowtk.finitediff.Perturbation property) ipw_edos_widget() (abipy.electrons.ebands.ElectronBands method) ipw_harmonic_thermo() (abipy.dfpt.phonons.PhononDosPlotter method) ipw_listdir() (in module abipy.tools.notebooks) ipw_select_plot() (abipy.dfpt.phonons.PhononBandsPlotter method) (abipy.dfpt.phonons.PhononDosPlotter method) (abipy.electrons.bse.MultipleMdfPlotter method) (abipy.electrons.ebands.ElectronBandsPlotter method) (abipy.electrons.ebands.ElectronDosPlotter method) ipw_visualize_widget() (abipy.waves.wfkfile.WfkFile method) ir_small() (abipy.core.atom.RadialFunction method) irdvars_for_ext() (in module abipy.flowtk.utils) IrredZone (class in abipy.core.kpoints) irvec (abipy.wannier90.abiwan.AbiwanFile property) is_abiunit() (in module abipy.abio.abivars) is_abivar() (in module abipy.abio.abivars) is_anaddb_var() (in module abipy.abio.abivars) is_atdep_var() (in module abipy.abio.abivars) is_available (abipy.iotools.visualizer.Visualizer property) is_completed (abipy.flowtk.qjobs.QueueJob property) is_critical (abipy.flowtk.nodes.Status property) is_dfpt_task (abipy.flowtk.tasks.AbinitTask property) is_diagonal() (in module abipy.tools.numtools) is_failed (abipy.flowtk.qjobs.QueueJob property) is_file (abipy.flowtk.nodes.Node property) is_flow (abipy.flowtk.nodes.Node property) is_gamma() (abipy.core.kpoints.Kpoint method) is_gs_task (abipy.flowtk.tasks.AbinitTask property) is_ibz (abipy.core.kpoints.KpointList property) is_input (abipy.abio.inputs.AbinitInput property) (abipy.abio.inputs.MultiDataset property) is_installed() (abipy.flowtk.psrepos.PseudosRepo method) is_internal (abipy.abio.abivar_database.variables.Variable property) is_intlike() (in module abipy.tools.duck) is_listlike() (in module abipy.tools.duck) is_macosx_app (abipy.iotools.visualizer.Visualizer attribute) is_metapsp (abipy.ppcodes.oncv_parser.OncvParser property) is_mpmesh (abipy.core.kpoints.KpointList property) is_multidataset (abipy.abio.inputs.AbinitInput property) (abipy.abio.inputs.MultiDataset property) is_number_like() (in module abipy.tools.duck) is_oncvpsp (abipy.ppcodes.oncv_parser.OncvParser property) is_path (abipy.core.kpoints.KpointList property) is_proper (abipy.core.symmetries.LatticeRotation property) is_running (abipy.flowtk.qjobs.QueueJob property) is_scf_run (abipy.electrons.gsr.GsrFile property) is_shift (abipy.core.kpoints.Ktables attribute) is_sortable() (abipy.abio.robots.Robot method) is_string() (in module abipy.abio.abivar_database.variables) (in module abipy.tools.duck) is_symmorphic (abipy.core.symmetries.AbinitSpaceGroup property) is_task (abipy.flowtk.nodes.Node property) is_valence (abipy.ppcodes.oncv_parser.AtomicLevel attribute) is_work (abipy.flowtk.nodes.Node property) isabifile() (in module abipy.abilab) isarray (abipy.abio.abivar_database.variables.Variable property) iscomplexobj (abipy.core.func1d.Function1D property) isCubic() (abipy.tools.elate.elastic.Elastic method) isE (abipy.core.symmetries.LatticeRotation property) isI (abipy.core.symmetries.LatticeRotation property) isin() (abipy.abio.abivar_database.variables.Range method) isinstance() (abipy.flowtk.nodes.Node method) isite (abipy.ml.relax_scanner.Entry attribute) isnc (abipy.abio.inputs.AbinitInput property) (abipy.abio.inputs.MultiDataset property) (abipy.flowtk.psrepos.PseudosRepo property) (abipy.flowtk.tasks.AbinitTask property) (abipy.flowtk.works.Work property) isncfile (abipy.flowtk.utils.File property) isneutral (abipy.core.atom.AtomicConfiguration property) isnot_ibz_sampling() (abipy.electrons.ebands.ElectronBands method) isOrthorhombic() (abipy.tools.elate.elastic.Elastic method) ispaw (abipy.abio.inputs.AbinitInput property) (abipy.abio.inputs.MultiDataset property) (abipy.flowtk.psrepos.PseudosRepo property) (abipy.flowtk.tasks.AbinitTask property) (abipy.flowtk.works.Work property) issamek() (in module abipy.core.kpoints) it1 (abipy.dynamics.analyzer.SigmaBerend attribute) it2 (abipy.dynamics.analyzer.SigmaBerend attribute) items() (abipy.abio.robots.Robot method) (abipy.flowtk.abiinspect.CyclesPlotter method) (abipy.ppcodes.oncv_plotter.MultiOncvPlotter method) (abipy.tools.plotting.ArrayPlotter method) iter_allvars() (abipy.abio.abivar_database.variables.VarDatabase method) iter_fftalgs() (abipy.tools.fftprof.FFTBenchmark method) iter_ixyz_r() (abipy.core.mesh3d.Mesh3D method) iter_lineopt() (abipy.abio.robots.Robot method) (abipy.dfpt.phonons.PhononBandsPlotter method) (abipy.electrons.ebands.ElectronBandsPlotter method) iter_lineopt_plotly() (abipy.dfpt.phonons.PhononBandsPlotter method) (abipy.electrons.ebands.ElectronBandsPlotter method) iter_mdat() (abipy.dynamics.analyzer.MultiMdAnalyzer method) iter_mdatc() (abipy.dynamics.analyzer.MultiMdAnalyzer method) iter_structures() (abipy.dynamics.analyzer.MdAnalyzer method) itup2s() (in module abipy.core.abinit_units) iv0 (abipy.dfpt.gruneisen.GrunsNcFile property) ivoigt_from_comp() (abipy.ml.aseml.AseResultsComparator method) iw0 (abipy.dfpt.phonons.PhononDos property) (abipy.eph.a2f.A2f property) (abipy.eph.a2f.A2Ftr property)

J

j (abipy.core.atom.NlkState property) JobStatus (class in abipy.flowtk.qjobs) jsmol_html() (in module abipy.panels.core) json_dump() (abipy.flowtk.nodes.NodeResults method) json_load() (abipy.flowtk.nodes.NodeResults class method) (abipy.tools.serialization.Serializable class method)

json_pretty_dump() (in module abipy.tools.serialization) JSON_SCHEMA (abipy.flowtk.nodes.NodeResults attribute) json_write() (abipy.tools.serialization.Serializable method) JSONViewer (class in abipy.panels.viewers) JsPane (class in abipy.panels.flows) JthRepo (class in abipy.flowtk.psrepos)

K

k2s() (in module abipy.eph.gpath) kappa() (in module abipy.electrons.optic) kcalc2ibz (abipy.eph.sigeph.SigEPhFile property) kene_vs_ecut (abipy.ppcodes.oncv_parser.OncvParser property) KerangeTask (class in abipy.flowtk.tasks) key (abipy.dynamics.analyzer.ArrheniusEntry attribute) Key (class in abipy.dynamics.cpx) keys() (abipy.abio.robots.Robot method) (abipy.dynamics.analyzer.ArrheniusPlotter method) (abipy.tools.plotting.ArrayPlotter method) kidxs (abipy.electrons.ebands.ElectronBands property) kin_densities (abipy.ppcodes.oncv_parser.OncvParser property) kind (abipy.flowtk.finitediff.Perturbation attribute) kindex() (abipy.electrons.ebands.ElectronBands method) (abipy.waves.wfkfile.WfkFile method) kinerr_nlk (abipy.ppcodes.oncv_parser.OncvParser property) kmesh_from_mpdivs() (in module abipy.core.kpoints) KmeshFile (class in abipy.electrons.abitk)

Kpath (class in abipy.core.kpoints) Kpoint (class in abipy.core.kpoints) KpointList (class in abipy.core.kpoints) kpoints (abipy.core.mixins.Has_ElectronBands property) (abipy.electrons.scr.ScrFile property) (abipy.eph.gkq.GkqRobot property) (abipy.eph.vpq.Polaron property) kpoints_from_line_density() (in module abipy.abio.inputs) KpointStar (class in abipy.core.kpoints) kptopt (abipy.electrons.ebands.ElectronBands property) KPTS_ERANGE (abipy.abio.enums.WFK_TASK attribute) ks_dirgaps (abipy.electrons.gwr.GwrFile property) (abipy.eph.sigeph.SigEPhFile property) ksgaps (abipy.electrons.gw.SigresFile property) ksign (abipy.core.atom.NlkState property) Ktables (class in abipy.core.kpoints) kwargs_for_anaget_phbst_and_phdos_files() (abipy.panels.ddb.DdbRobotPanel method) (abipy.panels.ddb.PanelWithAnaddbParams method)

L

l (abipy.panels.oncvpsp_gui.Lparams attribute) (abipy.panels.oncvpsp_gui.Nlf attribute) (abipy.ppcodes.oncv_parser.AtanLogDer attribute) (abipy.ppcodes.oncv_parser.ConvData attribute) l1_norm (abipy.core.func1d.Function1D property) l2_norm (abipy.core.func1d.Function1D property) l2color (abipy.electrons.fatbands.FatBandsFile attribute) l2tex (abipy.electrons.fatbands.FatBandsFile attribute) L_hw() (abipy.lumi.deltaSCF.DeltaSCF method) (abipy.lumi.lineshape.Lineshape method) L_hw_help() (in module abipy.lumi.utils_lumi) label (abipy.flowtk.finitediff.Perturbation property) labels (abipy.abio.robots.Robot property) (abipy.ppcodes.oncv_plotter.MultiOncvPlotter property) lambda_iso (abipy.eph.a2f.A2f property) last_etotal (abipy.flowtk.abiinspect.D2DEScfCycle property) (abipy.flowtk.abiinspect.GroundStateScfCycle property) last_iteration (abipy.flowtk.abiinspect.ScfCycle property) last_resort_solution() (abipy.flowtk.scheduler_error_parsers.AbstractError method) latex (abipy.core.atom.NlkState property) (abipy.eph.vpq.Entry attribute) latex_avg_volume (abipy.dynamics.analyzer.MdAnalyzer property) latex_formula (abipy.core.structure.Structure property) (abipy.dynamics.analyzer.DiffusionData attribute) (abipy.dynamics.analyzer.MdAnalyzer property) (abipy.dynamics.analyzer.SigmaBerend attribute) latex_formula_n_temp (abipy.dynamics.analyzer.MdAnalyzer property) latex_l (abipy.core.atom.NlkState property) latex_label (abipy.core.fields.Density attribute) (abipy.core.fields.VhartreePotential attribute) (abipy.core.fields.VhxcPotential attribute) (abipy.core.fields.VksPotential attribute) (abipy.core.fields.VxcPotential attribute) latex_name (abipy.electrons.scr.DielectricFunction attribute) (abipy.electrons.scr.InverseDielectricFunction attribute) (abipy.electrons.scr.Polarizability attribute) latex_symbol (abipy.eph.sigeph.EphSelfEnergy attribute) lattice (abipy.core.kpoints.Kpoint property) (abipy.ml.relax_scanner.RelaxScannerAnalyzer property) lattice_dataframe (abipy.core.restapi.DatabaseStructures property) LatticeRotation (class in abipy.core.symmetries) launch() (abipy.flowtk.tasks.TaskManager method) LC() (abipy.tools.elate.elastic.Elastic method) (abipy.tools.elate.elastic.ElasticOrtho method) LC3D() (in module abipy.tools.elate.elastic) LC_2() (abipy.tools.elate.elastic.Elastic method) LdaUDecorator (class in abipy.abio.decorators) LdauParams (class in abipy.flowtk.abiobjects) levelname (abipy.flowtk.nodes.HistoryRecord attribute) levelno (abipy.flowtk.nodes.HistoryRecord attribute) lexx_for_symbol() (abipy.flowtk.abiobjects.LexxParams method) LexxDecorator (class in abipy.abio.decorators) LexxParams (class in abipy.flowtk.abiobjects) likely_code_error() (abipy.flowtk.qjobs.QueueJob method)

limit (abipy.flowtk.scheduler_error_parsers.MemoryCancelError property) (abipy.flowtk.scheduler_error_parsers.TimeCancelError property) linear_lsq_linefit() (in module abipy.dynamics.analyzer) linecolor (abipy.electrons.fatbands.FatBandsFile attribute) lineno (abipy.flowtk.abiinspect.YamlDoc attribute) (abipy.flowtk.nodes.HistoryRecord attribute) lines (abipy.core.kpoints.Kpath property) Lineshape (class in abipy.lumi.lineshape) lineshape_1D_zero_temp() (abipy.lumi.deltaSCF.DeltaSCF method) linestyle_aeps (abipy.ppcodes.oncv_plotter.OncvPlotter attribute) linestyle_qsamp (abipy.eph.a2f.A2fRobot attribute) linestyles_der (abipy.electrons.psps.PspsFile attribute) linewidth (abipy.electrons.fatbands.FatBandsFile attribute) (abipy.ppcodes.oncv_plotter.OncvPlotter attribute) linewidth_slider() (in module abipy.display.utils) linewidths (abipy.dfpt.phonons.PhononBands property) (abipy.electrons.ebands.ElectronBands property) linspace() (abipy.abio.inputs.AbinitInput method) list_filepaths() (abipy.flowtk.utils.Directory method) list_ints() (in module abipy.tools.duck) list_strings() (in module abipy.abio.abivar_database.variables) listext() (abipy.flowtk.flows.Flow method) lloc (abipy.panels.oncvpsp_gui.OncvInput attribute) lmax (abipy.panels.oncvpsp_gui.OncvInput attribute) (abipy.ppcodes.oncv_parser.OncvParser property) lo_to_splitting (abipy.panels.ddb.PanelWithAnaddbParams attribute) load_module() (abipy.flowtk.launcher.ScriptEditor method) load_modules() (abipy.flowtk.launcher.ScriptEditor method) Loading (class in abipy.panels.core) LobsterAnalyzer (class in abipy.electrons.lobster) LobsterDoscarFile (class in abipy.electrons.lobster) LobsterInput (class in abipy.electrons.lobster) localization_ratio() (abipy.lumi.lineshape.Lineshape method) (in module abipy.embedding.utils_ifc) log_correction() (abipy.flowtk.nodes.Node method) lomo_sk() (abipy.electrons.ebands.ElectronBands method) lomos (abipy.electrons.ebands.ElectronBands property) LONGWAVE (abipy.abio.enums.RUNL attribute) look_before_you_leap() (abipy.flowtk.flows.Flow method) lorentzian() (in module abipy.tools.numtools) lparams (abipy.panels.oncvpsp_gui.OncvInput attribute) Lparams (class in abipy.panels.oncvpsp_gui) lpopt (abipy.panels.oncvpsp_gui.OncvInput attribute) lpratio (abipy.panels.electrons.SkwPanelWithFileInput attribute) Lruj (class in abipy.flowtk.wrappers) LrujAnalyzer (class in abipy.electrons.lruj) LrujResults (class in abipy.electrons.lruj) luj_for_symbol() (abipy.flowtk.abiobjects.LdauParams method) LujForSpecie (class in abipy.flowtk.abiobjects) LumiWork (class in abipy.flowtk.lumi_works) LumiWork_relaxations (class in abipy.flowtk.lumi_works) LumiWorkFromRelax (class in abipy.flowtk.lumi_works) lumo_sk() (abipy.electrons.ebands.ElectronBands method) lumos (abipy.electrons.ebands.ElectronBands property) lwindow (abipy.wannier90.abiwan.AbiwanFile property)

M

macro_uj (abipy.electrons.lruj.LrujResults attribute) MAGIC (abipy.flowtk.abiinspect.D2DEScfCycle attribute) (abipy.flowtk.abiinspect.GroundStateScfCycle attribute) (abipy.flowtk.abiinspect.ScfCycle attribute) magmoms (abipy.ml.aseml.AseResults attribute) magnetization (abipy.core.fields.Density property) magnetization_field (abipy.core.fields.Density property) main() (in module abipy.scripts.abicheck) (in module abipy.scripts.abicomp) (in module abipy.scripts.abidoc) (in module abipy.scripts.abigui) (in module abipy.scripts.abinp) (in module abipy.scripts.abiopen) (in module abipy.scripts.abips) (in module abipy.scripts.abirun) (in module abipy.scripts.abislurm) (in module abipy.scripts.abistruct) (in module abipy.scripts.abiview) (in module abipy.scripts.oncv) make3DPlot() (in module abipy.tools.elate.elastic) make3DPlot2() (in module abipy.tools.elate.elastic) make3DPlot3() (in module abipy.tools.elate.elastic) make3DPlotPosNeg() (in module abipy.tools.elate.elastic) make_and_open_notebook() (in module abipy.scripts.abiopen) make_ase_neb() (in module abipy.ml.aseml) make_bec_inputs() (abipy.abio.inputs.AbinitInput method) make_dde_inputs() (abipy.abio.inputs.AbinitInput method) make_ddepert_input() (abipy.abio.inputs.AbinitInput method) make_ddk_inputs() (abipy.abio.inputs.AbinitInput method) make_ddkpert_input() (abipy.abio.inputs.AbinitInput method) make_dfpt_effmass_inputs() (abipy.abio.inputs.AbinitInput method) make_dir() (abipy.flowtk.utils.File method) make_dkdk_input() (abipy.abio.inputs.AbinitInput method) make_doped_supercells() (abipy.core.structure.Structure method) make_dte_inputs() (abipy.abio.inputs.AbinitInput method) make_dtepert_input() (abipy.abio.inputs.AbinitInput method) make_ebands_input() (abipy.abio.inputs.AbinitInput method) make_edos_input() (abipy.abio.inputs.AbinitInput method) make_eph_transport_input() (abipy.abio.inputs.AbinitInput method) make_executable() (in module abipy.tools.iotools) make_gwr_qprange_input() (abipy.abio.inputs.AbinitInput method) make_input() (abipy.flowtk.tasks.AnaddbTask method) (abipy.flowtk.tasks.AtdepTask method) (abipy.flowtk.tasks.OpticTask method) make_isodistort_ph_dir() (abipy.dfpt.phonons.PhononBands method) make_light_tarfile() (abipy.flowtk.flows.Flow method) make_links() (abipy.flowtk.tasks.AnaddbTask method) (abipy.flowtk.tasks.AtdepTask method) (abipy.flowtk.tasks.OpticTask method) make_nscf_kptopt0_input() (abipy.abio.inputs.AbinitInput method) make_ph_inputs_qpoint() (abipy.abio.inputs.AbinitInput method) make_qadapter() (in module abipy.flowtk.qadapters) make_quad_input() (abipy.abio.inputs.AbinitInput method) make_relax_input() (abipy.abio.inputs.AbinitInput method) make_scf_nscf_inputs() (in module abipy.scripts.abicheck) make_scheduler() (abipy.flowtk.flows.Flow method) make_strain_perts_inputs() (abipy.abio.inputs.AbinitInput method) make_tarfile() (abipy.flowtk.flows.Flow method) make_targz() (abipy.abio.inputs.AbstractInput method) (abipy.abio.inputs.MultiDataset method) make_ticks_and_labels() (abipy.eph.v1qavg.V1qAvgFile method) make_U_from_sigma() (in module abipy.electrons.orbmag) make_wfk_kerange_inputs() (abipy.abio.inputs.AbinitInput method) makedirs() (abipy.flowtk.utils.Directory method) makePolarPlot() (in module abipy.tools.elate.elastic) makePolarPlot2() (in module abipy.tools.elate.elastic) makePolarPlot3() (in module abipy.tools.elate.elastic) makePolarPlotPosNeg() (in module abipy.tools.elate.elastic) map2rpn() (in module abipy.flowtk.utils) map_two_structures_coords() (in module abipy.embedding.utils_ifc) Marker (class in abipy.tools.plotting) marker_qsamp (abipy.eph.a2f.A2fRobot attribute) marker_size (abipy.electrons.fatbands.FatBandsFile attribute) marker_spin (abipy.electrons.fatbands.FatBandsFile attribute) (abipy.electrons.gw.SigresFile attribute) (abipy.electrons.gwr.GwrFile attribute) (abipy.eph.a2f.A2f attribute) (abipy.eph.a2f.A2Ftr attribute) (abipy.eph.sigeph.SigEPhFile attribute) marker_spin_plotly (abipy.electrons.fatbands.FatBandsFile attribute) markers_aeps (abipy.ppcodes.oncv_plotter.OncvPlotter attribute) markers_dropdown() (in module abipy.display.utils) markersize (abipy.ppcodes.oncv_plotter.OncvPlotter attribute) mass_factor (abipy.dfpt.frozen_phonons.FrozenPhonon property) mass_list() (abipy.lumi.lineshape.Lineshape method) MasterProcessMemoryCancelError (class in abipy.flowtk.scheduler_error_parsers) mat33_to_voigt() (in module abipy.flowtk.finitediff) match_eigenvectors() (in module abipy.dfpt.phtk) mats_from_projections() (abipy.core.pauli.Pauli method) max (abipy.core.func1d.Function1D property) max_angcoeff (abipy.dynamics.analyzer.DiffusionData attribute) max_cores (abipy.flowtk.tasks.ParalHints property) (abipy.flowtk.tasks.TaskManager property) max_efficiency (abipy.flowtk.tasks.ParalHints property) max_force (abipy.electrons.gsr.GsrFile property) max_mem_per_proc (abipy.flowtk.tasks.ParalHints property) max_nprocs (abipy.panels.oncvpsp_gui.OncvGui attribute) max_speedup (abipy.flowtk.tasks.ParalHints property) max_time (abipy.dynamics.analyzer.MdAnalyzer property) maxdeg (abipy.electrons.lruj.LrujResults attribute) maxfreq (abipy.dfpt.phonons.PhononBands property) maximize() (in module abipy.tools.elate.elastic) MayaviFieldAnimator (class in abipy.display.mvtk) mband (abipy.core.mixins.Has_ElectronBands property) md5_for_filepath() (in module abipy.flowtk.psrepos) md_filepath (abipy.flowtk.tasks.AnaddbTask property) mda (abipy.dynamics.analyzer.Msdtt0 attribute) MdAnalyzer (class in abipy.dynamics.analyzer) MDF_TYPECPLX2TEX (abipy.electrons.bse.MultipleMdfPlotter attribute) MDF_TYPES (abipy.electrons.bse.MultipleMdfPlotter attribute) MdfFile (class in abipy.electrons.bse) MdfPlotter (class in abipy.electrons.bse) MdfReader (class in abipy.electrons.bse) mem_per_proc (abipy.flowtk.tasks.TaskManager property) memoized_method() (in module abipy.tools.decorators) MemoryCancelError (class in abipy.flowtk.scheduler_error_parsers) merge() (abipy.eph.sigeph.QpTempList method) (abipy.flowtk.wrappers.Mrgddb method) (abipy.flowtk.wrappers.Mrgdvdb method) merge_dataframes_sk() (abipy.electrons.gw.SigresRobot method) merge_deps() (abipy.flowtk.nodes.Node method) merge_omegas() (abipy.flowtk.wrappers.Mrgscr method) merge_qpoints() (abipy.flowtk.wrappers.Mrgscr method) merge_scr_files() (abipy.flowtk.gw_works.ScreeningWork method) merge_scrfiles() (abipy.flowtk.works.QptdmWork method) mesh (abipy.core.func1d.Function1D property) (abipy.core.kpoints.Ktables attribute) Mesh3D (class in abipy.core.mesh3d) message (abipy.flowtk.nodes.HistoryRecord attribute) metric (abipy.electrons.lruj.LrujResults attribute) min (abipy.core.func1d.Function1D property) min_angcoeff (abipy.dynamics.analyzer.DiffusionData attribute) min_ghost_empty_ha (abipy.ppcodes.oncv_parser.OncvParser property) minfreq (abipy.dfpt.phonons.PhononBands property) minimal_scf_input() (in module abipy.abio.factories) minimax_mesh (abipy.electrons.gwr.GwrFile property) minimize() (in module abipy.tools.elate.elastic) minmax_ridx (abipy.core.atom.RadialFunction property) mjson_load() (in module abipy.tools.serialization) mjson_loads() (in module abipy.tools.serialization) mjson_write() (in module abipy.tools.serialization) mkdir() (abipy.ml.aseml.MlBase method) ml_relax_opt() (abipy.ml.ml_relax.RelaxationProfiler method) MlBase (class in abipy.ml.aseml) MlCompareNNs (class in abipy.ml.aseml) MlCwfEos (class in abipy.ml.aseml) MlEos (class in abipy.ml.aseml) MlGsList (class in abipy.ml.aseml) MlMd (class in abipy.ml.aseml) MlNeb (class in abipy.ml.aseml) MlOrderer (class in abipy.ml.aseml) MlPhonopy (class in abipy.ml.ml_phonopy) MlPhonopyWithDDB (class in abipy.ml.ml_phonopy) MlRelaxer (class in abipy.ml.aseml) MlRelaxerFromMdTraj (class in abipy.ml.aseml) MlValidateWithAbinitio (class in abipy.ml.aseml) MlVZSISAQHAPhonopy (class in abipy.ml.ml_phonopy) mnemonics (abipy.abio.inputs.AbinitInput property) MoabJob (class in abipy.flowtk.qjobs) mode (abipy.flowtk.zsisa.ZsisaResults attribute) model_from_ebands() (abipy.electrons.arpes.ArpesPlotter class method) modes() (abipy.abio.inputs.AnaddbInput class method) modes_at_qpoint() (abipy.abio.inputs.AnaddbInput class method) modes_at_qpoints() (abipy.abio.inputs.AnaddbInput class method) module abipy abipy.abilab abipy.abio abipy.abio.abivar_database abipy.abio.abivar_database.variables abipy.abio.abivar_database.variables_abinit abipy.abio.abivar_database.variables_aim abipy.abio.abivar_database.variables_anaddb abipy.abio.abivar_database.variables_atdep abipy.abio.abivar_database.variables_multibinit abipy.abio.abivar_database.variables_optic abipy.abio.abivars abipy.abio.abivars_db abipy.abio.decorators abipy.abio.enums abipy.abio.factories abipy.abio.input_tags abipy.abio.inputs abipy.abio.outputs abipy.abio.robots abipy.abio.timer abipy.abio.variable abipy.core abipy.core.abinit_units abipy.core.atom abipy.core.fields abipy.core.func1d abipy.core.globals abipy.core.gsphere abipy.core.irrepsdb abipy.core.kpoints abipy.core.mesh3d abipy.core.mixins abipy.core.pauli abipy.core.perl abipy.core.release abipy.core.restapi abipy.core.site_symmetries abipy.core.skw abipy.core.structure abipy.core.symmetries abipy.dfpt abipy.dfpt.anaddbnc abipy.dfpt.converters abipy.dfpt.ddb abipy.dfpt.deformation_utils abipy.dfpt.elastic abipy.dfpt.frozen_phonons abipy.dfpt.gruneisen abipy.dfpt.ifc abipy.dfpt.msqdos abipy.dfpt.phonons abipy.dfpt.phtk abipy.dfpt.qha abipy.dfpt.qha_2D abipy.dfpt.qha_general_stress abipy.dfpt.raman abipy.dfpt.vsound abipy.dfpt.vzsisa abipy.display abipy.display.mvtk abipy.display.utils abipy.dynamics abipy.dynamics.analyzer abipy.dynamics.cpx abipy.dynamics.hist abipy.electrons abipy.electrons.abitk abipy.electrons.arpes abipy.electrons.bse abipy.electrons.charges abipy.electrons.denpot abipy.electrons.ebands abipy.electrons.effmass_analyzer abipy.electrons.eskw abipy.electrons.fatbands abipy.electrons.fold2bloch abipy.electrons.gsr abipy.electrons.gw abipy.electrons.gwr abipy.electrons.lobster abipy.electrons.lruj abipy.electrons.optic abipy.electrons.orbmag abipy.electrons.psps abipy.electrons.scissors abipy.electrons.scr abipy.electrons.tchim abipy.embedding abipy.embedding.embedding_ifc abipy.embedding.utils_ifc abipy.eph abipy.eph.a2f abipy.eph.common abipy.eph.cumulant abipy.eph.eph_plotter abipy.eph.gkq abipy.eph.gpath abipy.eph.gstore abipy.eph.gwan abipy.eph.rta abipy.eph.sigeph abipy.eph.transportfile abipy.eph.v1qavg abipy.eph.v1qnu abipy.eph.v1sym abipy.eph.vpq abipy.eph.wr abipy.flowtk abipy.flowtk.abiinspect abipy.flowtk.abiobjects abipy.flowtk.abiphonopy abipy.flowtk.abitimer abipy.flowtk.dfpt_flows abipy.flowtk.dfpt_works abipy.flowtk.effmass_works abipy.flowtk.eph_flows abipy.flowtk.events abipy.flowtk.finitediff abipy.flowtk.flows abipy.flowtk.gruneisen abipy.flowtk.gs_works abipy.flowtk.gw_works abipy.flowtk.gwr_works abipy.flowtk.launcher abipy.flowtk.lumi_works abipy.flowtk.mocks abipy.flowtk.netcdf abipy.flowtk.nodes abipy.flowtk.pseudos abipy.flowtk.psrepos abipy.flowtk.qadapters abipy.flowtk.qha_2d abipy.flowtk.qjobs abipy.flowtk.qutils abipy.flowtk.scheduler_error_handlers abipy.flowtk.scheduler_error_parsers abipy.flowtk.tasks abipy.flowtk.utils abipy.flowtk.vzsisa abipy.flowtk.works abipy.flowtk.wrappers abipy.flowtk.zsisa abipy.iotools abipy.iotools.cube abipy.iotools.visualizer abipy.iotools.xsf abipy.lumi abipy.lumi.deltaSCF abipy.lumi.lineshape abipy.lumi.utils_lumi abipy.ml abipy.ml.aseml abipy.ml.extxyz_generator abipy.ml.ml_phonopy abipy.ml.ml_relax abipy.ml.relax_scanner abipy.ml.tools abipy.panels abipy.panels.a2f abipy.panels.core abipy.panels.ddb abipy.panels.electrons abipy.panels.fatbands abipy.panels.flows abipy.panels.gsr abipy.panels.hist abipy.panels.nodes abipy.panels.oncvpsp_gui abipy.panels.outputs abipy.panels.phonons abipy.panels.sigeph abipy.panels.structure abipy.panels.tasks abipy.panels.viewers abipy.panels.works abipy.ppcodes abipy.ppcodes.base_parser abipy.ppcodes.oncv_parser abipy.ppcodes.oncv_plotter abipy.ppcodes.ppgen abipy.scripts abipy.scripts.abicheck abipy.scripts.abicomp abipy.scripts.abidoc abipy.scripts.abigui abipy.scripts.abiml abipy.scripts.abinp abipy.scripts.abiopen abipy.scripts.abips abipy.scripts.abirun abipy.scripts.abislurm abipy.scripts.abistruct abipy.scripts.abiview abipy.scripts.oncv abipy.tools abipy.tools.bessel abipy.tools.cli_parsers abipy.tools.context_managers abipy.tools.decorators abipy.tools.derivatives abipy.tools.devtools abipy.tools.duck abipy.tools.elate abipy.tools.elate.elastic abipy.tools.fftprof abipy.tools.iotools abipy.tools.notebooks abipy.tools.numtools abipy.tools.pade abipy.tools.parallel abipy.tools.plotting abipy.tools.printing abipy.tools.serialization abipy.tools.tensors abipy.tools.text abipy.tools.typing abipy.wannier90 abipy.wannier90.abiwan abipy.wannier90.win abipy.wannier90.wout abipy.waves abipy.waves.pwwave abipy.waves.wfkfile

module (abipy.flowtk.nodes.HistoryRecord attribute) MolecularDynamics (class in abipy.ml.aseml) mongo_assimilate() (abipy.flowtk.flows.Flow method) mongo_id (abipy.flowtk.flows.Flow property) move() (abipy.flowtk.utils.File method) (abipy.flowtk.works.Work method) mp_match() (abipy.core.structure.Structure method) mp_match_structure() (in module abipy.core.structure) mp_search() (in module abipy.core.structure) mpdivs_shifts (abipy.core.kpoints.KpointList property) mpi_procs (abipy.flowtk.tasks.TaskManager property) (abipy.panels.core.AbipyParameterized attribute) mpl() (in module abipy.panels.core) mpl_kwargs (abipy.panels.core.AbipyParameterized property) mpl_style (abipy.dynamics.analyzer.ArrheniusEntry attribute) MpStructures (class in abipy.core.restapi) Mrgddb (class in abipy.flowtk.wrappers) Mrgdvdb (class in abipy.flowtk.wrappers) Mrgscr (class in abipy.flowtk.wrappers) msd_t (abipy.dynamics.analyzer.DiffusionData attribute) (abipy.dynamics.analyzer.Msdtt0 property) msd_tt0_from_tac() (in module abipy.dynamics.analyzer) msdSScorrelated (abipy.dynamics.analyzer.DiffusionData attribute) Msdtt0 (class in abipy.dynamics.analyzer) Msdtt0List (class in abipy.dynamics.analyzer) msqd_dos (abipy.dfpt.phonons.PhdosFile property) MsqDos (class in abipy.dfpt.msqdos) mu_e (abipy.eph.sigeph.SigEPhFile property) MultiDataset (class in abipy.abio.inputs) multidimensional_optimization() (abipy.flowtk.tasks.ParalHints method) MultiFlowScheduler (class in abipy.flowtk.launcher) MultiMdAnalyzer (class in abipy.dynamics.analyzer) MultiMlNeb (class in abipy.ml.aseml) MultiOncvPlotter (class in abipy.ppcodes.oncv_plotter) MultipleMdfPlotter (class in abipy.electrons.bse) MultipleValue (class in abipy.abio.abivar_database.variables) MultiRelaxTask (class in abipy.flowtk.tasks) mvanimate() (abipy.dynamics.hist.HistFile method) mvplot_trajectories() (abipy.dynamics.hist.HistFile method) mwan (abipy.wannier90.abiwan.AbiwanFile property) my_characteristics (abipy.abio.abivar_database.variables.InputVariables property) my_md() (in module abipy.panels.core) my_unicode() (in module abipy.abio.abivar_database.variables) my_varset_list (abipy.abio.abivar_database.variables.InputVariables property) MyElasticTensor (class in abipy.dfpt.elastic) MyPiezoTensor (class in abipy.dfpt.elastic)

N

n (abipy.panels.oncvpsp_gui.Nlf attribute) n() (in module abipy.electrons.optic) n_directions (abipy.dfpt.vsound.SoundVelocity property) n_displ (abipy.dfpt.frozen_phonons.FrozenPhonon property) n_elems (abipy.core.structure.Structure property) n_modes() (abipy.lumi.lineshape.Lineshape method) name (abipy.abio.abivar_database.variables.Variable property) (abipy.abio.variable.InputVariable property) (abipy.core.kpoints.Kpoint property) (abipy.core.kpoints.KpointStar property) (abipy.core.symmetries.LatticeRotation property) (abipy.dynamics.cpx.Key attribute) (abipy.eph.vpq.Entry attribute) (abipy.flowtk.finitediff.Perturbation property) (abipy.flowtk.nodes.Node property) (abipy.flowtk.psrepos.JthRepo property) (abipy.flowtk.psrepos.OncvpspRepo property) (abipy.flowtk.psrepos.PseudosRepo property) (abipy.flowtk.scheduler_error_parsers.AbstractError property) (abipy.flowtk.scheduler_error_parsers.CorrectorProtocolApplication property) (abipy.flowtk.scheduler_error_parsers.CorrectorProtocolScheduler property) (abipy.panels.a2f.A2fFilePanel attribute) (abipy.panels.core.AbipyParameterized attribute) (abipy.panels.core.BaseRobotPanel attribute) (abipy.panels.core.HTMLwithClipboardBtn attribute) (abipy.panels.core.NcFileViewer attribute) (abipy.panels.core.PanelWithEbandsRobot attribute) (abipy.panels.core.PanelWithElectronBands attribute) (abipy.panels.core.PanelWithStructure attribute) (abipy.panels.ddb.CompareDdbWithMP attribute) (abipy.panels.ddb.DdbFilePanel attribute) (abipy.panels.ddb.DdbPanelWithFileInput attribute) (abipy.panels.ddb.DdbRobotPanel attribute) (abipy.panels.ddb.PanelWithAnaddbParams attribute) (abipy.panels.ddb.PanelWithFileInput attribute) (abipy.panels.ddb.PanelWithStructureInput attribute) (abipy.panels.ddb.RobotWithFileInput attribute) (abipy.panels.electrons.CompareEbandsWithMP attribute) (abipy.panels.electrons.SkwPanelWithFileInput attribute) (abipy.panels.fatbands.FatBandsFilePanel attribute) (abipy.panels.flows.FlowPanel attribute) (abipy.panels.flows.JsPane attribute) (abipy.panels.flows.WorkTaskSelector attribute) (abipy.panels.gsr.GsrFilePanel attribute) (abipy.panels.gsr.GsrRobotPanel attribute) (abipy.panels.hist.HistFilePanel attribute) (abipy.panels.nodes.FilePathSelect attribute) (abipy.panels.nodes.NodeParameterized attribute) (abipy.panels.nodes.StatusCards attribute) (abipy.panels.oncvpsp_gui.Lparams attribute) (abipy.panels.oncvpsp_gui.Nlf attribute) (abipy.panels.oncvpsp_gui.OncvGui attribute) (abipy.panels.oncvpsp_gui.OncvInput attribute) (abipy.panels.outputs.AbinitOutputFilePanel attribute) (abipy.panels.outputs.AbinitOutputFilePanelWithFileInput attribute) (abipy.panels.phonons.PhononBandsPlotterPanel attribute) (abipy.panels.sigeph.SigEPhFilePanel attribute) (abipy.panels.structure.InputFileGenerator attribute) (abipy.panels.structure.StructurePanel attribute) (abipy.panels.tasks.TaskPanel attribute) (abipy.panels.viewers.AceViewer attribute) (abipy.panels.viewers.JSONViewer attribute) (abipy.panels.works.WorkPanel attribute) name2varset (abipy.abio.abivar_database.variables.InputVariables property) name_tensor_list() (abipy.dfpt.elastic.ElasticData method) names (abipy.core.kpoints.KpointList property) natom (abipy.dfpt.ddb.DdbFile property) (abipy.dynamics.analyzer.MdAnalyzer property) (abipy.dynamics.hist.HistReader property) (abipy.electrons.lruj.LrujResults attribute) (abipy.electrons.orbmag.OrbmagAnalyzer property) (abipy.ml.aseml.AseResultsComparator property) natom() (abipy.lumi.deltaSCF.DeltaSCF method) natoms (abipy.dfpt.qha.AbstractQHA property) nb (abipy.eph.gstore.Gqk attribute) (abipy.eph.gwan.Gqk attribute) (abipy.eph.vpq.Polaron attribute) nband (abipy.core.mixins.Has_ElectronBands property) (abipy.electrons.ebands.ElectronBands property) nbas (abipy.panels.oncvpsp_gui.Lparams attribute) nbz (abipy.core.kpoints.Ktables attribute) nc (abipy.panels.oncvpsp_gui.OncvInput attribute) (abipy.ppcodes.oncv_parser.OncvParser attribute) nc_path (abipy.panels.core.NcFileViewer attribute) ncarriers (abipy.dynamics.analyzer.DiffusionData attribute) ncdump() (abipy.core.mixins.AbinitNcFile method) NcFileViewer (class in abipy.panels.core) ncon (abipy.panels.oncvpsp_gui.Lparams attribute) nconf (abipy.panels.oncvpsp_gui.OncvInput attribute) ncores_allocated (abipy.flowtk.flows.Flow property) ncores_reserved (abipy.flowtk.flows.Flow property) ncores_used (abipy.flowtk.flows.Flow property) ndata (abipy.electrons.lruj.LrujResults attribute) ndegen (abipy.wannier90.abiwan.AbiwanFile property) ndivsm (abipy.panels.ddb.PanelWithAnaddbParams attribute) ndtset (abipy.abio.inputs.MultiDataset property) need_abiext() (abipy.flowtk.utils.Directory method) NegateAction (class in abipy.scripts.abiview) nelect (abipy.core.mixins.Has_ElectronBands property) nelect_updown (abipy.core.fields.Density property) neq() (abipy.eph.gstore.Gqk method) (abipy.eph.gstore.GstoreRobot method) (abipy.eph.gwan.Gqk method) (abipy.eph.gwan.GstoreRobot method) netcdf_name (abipy.core.fields.Density attribute) (abipy.core.fields.VhartreePotential attribute) (abipy.core.fields.VhxcPotential attribute) (abipy.core.fields.VksPotential attribute) (abipy.core.fields.VxcPotential attribute) (abipy.electrons.scr.DielectricFunction attribute) (abipy.electrons.scr.InverseDielectricFunction attribute) (abipy.electrons.scr.Polarizability attribute) (abipy.electrons.scr.ScrFile property)

neutral_from_symbol() (abipy.core.atom.AtomicConfiguration class method) new_with_decorators() (abipy.abio.inputs.AbinitInput method) new_with_fixed_mpi_omp() (abipy.flowtk.tasks.TaskManager method) new_with_irred_kpoints() (abipy.electrons.ebands.ElectronBands method) new_with_structure() (abipy.abio.inputs.AbinitInput method) new_with_uptri_lattice() (abipy.core.structure.Structure method) new_with_vars() (abipy.abio.inputs.AbinitInput method) new_work() (abipy.flowtk.flows.Flow method) news_varname_values() (abipy.abio.inputs.AbinitInput method) next() (abipy.flowtk.abiinspect.YamlTokenizer method) next_d2de_scf_cycle() (abipy.abio.outputs.AbinitOutputFile method) next_doc_with_tag() (abipy.flowtk.abiinspect.YamlTokenizer method) next_gs_scf_cycle() (abipy.abio.outputs.AbinitOutputFile method) ng (abipy.electrons.scr.ScrFile property) ngkpt_and_shifts (abipy.electrons.orbmag.OrbmagAnalyzer property) (abipy.eph.vpq.Polaron property) ngkpt_and_shifts() (abipy.electrons.abitk.KmeshFile method) ngkpt_list (abipy.flowtk.dfpt_flows.ConvBecsEpsResults attribute) ngqpt (abipy.eph.common.BaseEphReader property) nibz (abipy.core.kpoints.Ktables attribute) nimw (abipy.electrons.scr.ScrFile property) nk (abipy.eph.vpq.Polaron attribute) nkcalc (abipy.electrons.gwr.GwrFile property) nkpt (abipy.core.mixins.Has_ElectronBands property) (abipy.waves.wfkfile.WfkFile property) Nlf (class in abipy.panels.oncvpsp_gui) nlf_list (abipy.panels.oncvpsp_gui.OncvInput attribute) nlk (abipy.ppcodes.oncv_parser.AtomicLevel attribute) NlkState (class in abipy.core.atom) NLOpticalSusceptibilityTensor (class in abipy.tools.tensors) nntot (abipy.wannier90.abiwan.AbiwanFile property) no (abipy.ml.aseml.RX_MODE attribute) node (abipy.flowtk.nodes.Dependency property) Node (class in abipy.flowtk.nodes) node_from_nid() (abipy.flowtk.flows.Flow method) node_id (abipy.flowtk.nodes.Node property) NodeCorrections (class in abipy.flowtk.nodes) NodeError NodeFailureError (class in abipy.flowtk.scheduler_error_parsers) NoDefaultProvided (class in abipy.tools.duck) NodeHistory (class in abipy.flowtk.nodes) NodeParameterized (class in abipy.panels.nodes) NodeResults (class in abipy.flowtk.nodes) nodes (abipy.flowtk.scheduler_error_parsers.NodeFailureError property) non_anal_directions (abipy.dfpt.phonons.PhononBands property) non_anal_dyn_mat_eigenvect (abipy.dfpt.phonons.PhononBands property) non_anal_phdispl_cart (abipy.dfpt.phonons.PhononBands property) non_anal_phfreqs (abipy.dfpt.phonons.PhononBands property) NonAnalyticalPh (class in abipy.dfpt.phtk) NONE (abipy.abio.enums.WFK_TASK attribute) none (abipy.ml.aseml.CORRALGO attribute) none_if_masked_array() (abipy.iotools.ETSF_Reader method) NONLINEAR (abipy.abio.enums.RUNL attribute) norm (abipy.core.kpoints.Kpoint property) norm() (abipy.core.structure.Structure method) norm2() (abipy.waves.pwwave.PWWaveFunction method) NotebookWriter (class in abipy.core.mixins) nparr_to_df() (in module abipy.tools.numtools) npert (abipy.electrons.lruj.LrujResults attribute) nprocs_for_ntasks() (in module abipy.ml.relax_scanner) nproj (abipy.panels.oncvpsp_gui.Lparams attribute) nq (abipy.eph.vpq.Polaron attribute) nqpt (abipy.dfpt.phonons.PhononBands property) nqsmall (abipy.panels.ddb.PanelWithAnaddbParams attribute) nqsmall_or_qppa (abipy.flowtk.zsisa.ThermalRelaxEntry attribute) nrew (abipy.electrons.scr.ScrFile property) NscfConvergenceWarning (class in abipy.flowtk.events) NscfDdksWork (class in abipy.flowtk.dfpt_works) NscfTask (class in abipy.flowtk.tasks) nspden (abipy.core.mixins.Has_ElectronBands property) nspinor (abipy.core.mixins.Has_ElectronBands property) nsppol (abipy.core.mixins.Has_ElectronBands property) (abipy.electrons.scissors.ScissorsBuilder property) nstates (abipy.eph.vpq.Polaron attribute) nsteps (abipy.ml.aseml.AseResultsComparator property) nt (abipy.dynamics.analyzer.MdAnalyzer property) ntemp (abipy.eph.rta.RtaFile property) (abipy.eph.sigeph.QpTempList property) (abipy.eph.transportfile.TransportFile property) nucdipmom_atom (abipy.electrons.orbmag.OrbmagFile property) num_cores (abipy.flowtk.tasks.TaskManager property) num_corrections (abipy.flowtk.nodes.Node property) num_errored_tasks (abipy.flowtk.flows.Flow property) num_iterations (abipy.flowtk.abiinspect.ScfCycle property) num_qpoints (abipy.electrons.bse.DielectricFunction property) num_spatial_symmetries (abipy.core.symmetries.AbinitSpaceGroup property) num_steps (abipy.dynamics.hist.HistFile property) (abipy.dynamics.hist.HistReader property) num_tasks (abipy.flowtk.flows.Flow property) num_unconverged_tasks (abipy.flowtk.flows.Flow property) num_valence_electrons (abipy.abio.inputs.AbinitInput property) num_valence_electrons() (abipy.core.structure.Structure method) number_of_atoms (abipy.dfpt.ifc.InteratomicForceConstants property) number_of_neighbours (abipy.dfpt.ifc.InteratomicForceConstants property) nums_and_text() (in module abipy.tools.text) nv (abipy.panels.oncvpsp_gui.OncvInput attribute) (abipy.ppcodes.oncv_parser.OncvParser attribute) nvols (abipy.dfpt.gruneisen.GrunsNcFile property) (abipy.dfpt.qha.AbstractQHA property) nw (abipy.electrons.scr.ScrFile property) nwan_spin (abipy.wannier90.abiwan.AbiwanFile property) nx (abipy.core.mesh3d.Mesh3D property) ny (abipy.core.mesh3d.Mesh3D property) nz (abipy.core.mesh3d.Mesh3D property)

O

occ (abipy.ppcodes.oncv_parser.AtomicLevel attribute) occ_scr (abipy.electrons.lruj.LrujResults attribute) occ_unscr (abipy.electrons.lruj.LrujResults attribute) occfacts (abipy.electrons.ebands.ElectronBands property) occtype (abipy.core.skw.ElectronInterpolator attribute) omega_log (abipy.eph.a2f.A2f property) omp_threads (abipy.flowtk.tasks.TaskManager property) on_abisanitize_btn() (abipy.panels.structure.StructurePanel method) on_all_ok() (abipy.flowtk.abiphonopy.PhonopyGruneisenWork method) (abipy.flowtk.abiphonopy.PhonopyWork method) (abipy.flowtk.dfpt_flows.ConvBecsEpsFlow method) (abipy.flowtk.dfpt_works.ElasticWork method) (abipy.flowtk.effmass_works.EffMassAutoDFPTWork method) (abipy.flowtk.effmass_works.FrohlichZPRFlow method) (abipy.flowtk.finitediff.FiniteStrainWork method) (abipy.flowtk.flows.Flow method) (abipy.flowtk.gruneisen.GruneisenWork method) (abipy.flowtk.gs_works.EosWork method) (abipy.flowtk.gw_works.ScreeningWork method) (abipy.flowtk.gwr_works.GWRChiCompareWork method) (abipy.flowtk.gwr_works.GWRRPAConvWork method) (abipy.flowtk.gwr_works.GWRSigmaConvWork method) (abipy.flowtk.lumi_works.LumiWork method) (abipy.flowtk.lumi_works.LumiWork_relaxations method) (abipy.flowtk.lumi_works.LumiWorkFromRelax method) (abipy.flowtk.qha_2d.Qha2dWork method) (abipy.flowtk.vzsisa.VzsisaWork method) (abipy.flowtk.works.BecWork method) (abipy.flowtk.works.DteWork method) (abipy.flowtk.works.PhononWfkqWork method) (abipy.flowtk.works.PhononWork method) (abipy.flowtk.works.QptdmWork method) (abipy.flowtk.zsisa.ZsisaFlow method) (abipy.flowtk.zsisa.ZsisaWork method) on_border (abipy.core.kpoints.Kpoint property) on_change_debl() (abipy.panels.oncvpsp_gui.OncvGui method) on_change_dvloc0() (abipy.panels.oncvpsp_gui.OncvGui method) on_change_qcut() (abipy.panels.oncvpsp_gui.OncvGui method) on_change_rc() (abipy.panels.oncvpsp_gui.OncvGui method) on_change_rc5() (abipy.panels.oncvpsp_gui.OncvGui method) on_change_rc_qcut() (abipy.panels.oncvpsp_gui.OncvGui method) on_change_rhomodel() (abipy.panels.oncvpsp_gui.OncvGui method) on_compare_params_btn() (abipy.panels.core.BaseRobotPanel method) on_compute_elastic_btn() (abipy.panels.ddb.DdbFilePanel method) on_corrections_btn() (abipy.panels.nodes.NodeParameterized method) on_debug_btn() (abipy.panels.nodes.NodeParameterized method) on_dep_ok() (abipy.flowtk.flows.Flow method) on_dims_btn() (abipy.panels.nodes.NodeParameterized method) on_ebands_input_btn() (abipy.panels.structure.StructurePanel method) on_ebands_plotter_btn() (abipy.panels.core.PanelWithEbandsRobot method) on_edos_plotter_btn() (abipy.panels.core.PanelWithEbandsRobot method) on_events_btn() (abipy.panels.nodes.NodeParameterized method) on_execute_btn() (abipy.panels.oncvpsp_gui.OncvGui method) on_file_input() (abipy.panels.ddb.CompareDdbWithMP method) (abipy.panels.ddb.DdbPanelWithFileInput method) (abipy.panels.ddb.PanelWithFileInput method) (abipy.panels.electrons.CompareEbandsWithMP method) (abipy.panels.outputs.AbinitOutputFilePanelWithFileInput method) (abipy.panels.structure.InputFileGenerator method) on_goto_task_bnt() (abipy.panels.flows.FlowMultiPageApp method) on_goto_work_bnt() (abipy.panels.flows.FlowMultiPageApp method) on_graphviz_btn() (abipy.panels.nodes.NodeParameterized method) on_gs_input_btn() (abipy.panels.structure.StructurePanel method) on_gsr_dataframe_btn() (abipy.panels.gsr.GsrRobotPanel method) on_handlers_btn() (abipy.panels.nodes.NodeParameterized method) on_history_btn() (abipy.panels.nodes.NodeParameterized method) (abipy.panels.oncvpsp_gui.OncvGui method) on_ibz_file_input() (abipy.panels.electrons.SkwPanelWithFileInput method) on_kpath_file_input() (abipy.panels.electrons.SkwPanelWithFileInput method) on_load_files() (abipy.panels.ddb.RobotWithFileInput method) on_mp_match_btn() (abipy.panels.structure.StructurePanel method) on_mpid_input() (abipy.panels.ddb.DdbPanelWithFileInput method) (abipy.panels.ddb.PanelWithFileInput method) (abipy.panels.structure.InputFileGenerator method) on_netcdf_info_btn() (abipy.panels.core.NcFileViewer method) on_ok() (abipy.flowtk.finitediff.FiniteStrainWork method) (abipy.flowtk.qha_2d.Qha2dWork method) (abipy.flowtk.vzsisa.VzsisaWork method) (abipy.flowtk.works.GKKPWork method) (abipy.flowtk.works.PhononWfkqWork method) (abipy.flowtk.works.RelaxWork method) (abipy.flowtk.zsisa.ZsisaWork method)

on_ph_input_btn() (abipy.panels.structure.StructurePanel method) on_phbands_plot_btn() (abipy.panels.phonons.PhononBandsPlotterPanel method) on_plot_ebands_btn() (abipy.panels.core.PanelWithElectronBands method) on_plot_edos_btn() (abipy.panels.core.PanelWithElectronBands method) on_plot_effmass_btn() (abipy.panels.core.PanelWithElectronBands method) on_plot_fatbands_btn() (abipy.panels.fatbands.FatBandsFilePanel method) on_plot_fatdos_btn() (abipy.panels.fatbands.FatBandsFilePanel method) on_plot_ifc() (abipy.panels.ddb.DdbFilePanel method) on_plot_ifermi_btn() (abipy.panels.core.PanelWithElectronBands method) on_plot_phbands_and_phdos() (abipy.panels.ddb.DdbFilePanel method) on_plot_qpsolution_sk() (abipy.panels.sigeph.SigEPhFilePanel method) on_plot_relax_btn() (abipy.panels.hist.HistFilePanel method) on_plot_skw_btn() (abipy.panels.core.PanelWithElectronBands method) on_plotly_template() (abipy.panels.core.AbipyParameterized method) on_replot_btn() (abipy.panels.electrons.CompareEbandsWithMP method) on_save_btn() (abipy.panels.oncvpsp_gui.OncvGui method) on_status_btn() (abipy.panels.nodes.NodeParameterized method) on_structures_btn() (abipy.panels.flows.FlowPanel method) on_task_btn() (abipy.panels.flows.FlowPanel method) on_vars_btn() (abipy.panels.nodes.NodeParameterized method) on_view_a2f() (abipy.panels.a2f.A2fFilePanel method) on_view_relax_btn() (abipy.panels.hist.HistFilePanel method) on_view_structure() (abipy.panels.core.PanelWithStructure method) oncv_compare() (in module abipy.scripts.oncv) oncv_ghost() (in module abipy.scripts.oncv) oncv_gnuplot() (in module abipy.scripts.oncv) oncv_gui() (in module abipy.scripts.oncv) oncv_make_open_notebook() (in module abipy.ppcodes.oncv_plotter) oncv_notebook() (in module abipy.scripts.oncv) oncv_plot() (in module abipy.scripts.oncv) oncv_plot_pseudo() (in module abipy.scripts.oncv) oncv_print() (in module abipy.scripts.oncv) oncv_run() (in module abipy.scripts.oncv) oncv_write_notebook() (in module abipy.ppcodes.oncv_plotter) OncvGenerator (class in abipy.ppcodes.ppgen) OncvGui (class in abipy.panels.oncvpsp_gui) OncvInput (class in abipy.panels.oncvpsp_gui) OncvParser (class in abipy.ppcodes.oncv_parser) OncvPlotter (class in abipy.ppcodes.oncv_plotter) OncvpspRepo (class in abipy.flowtk.psrepos) one_point (abipy.ml.aseml.CORRALGO attribute) only_independent_chi_components() (abipy.abio.inputs.OpticInput method) opath_from_ext() (abipy.flowtk.nodes.FileNode method) (abipy.flowtk.works.Work method) open_abo() (abipy.flowtk.tasks.AbinitTask method) open_ace_editor() (abipy.panels.viewers.AceViewer method) open_all_cards() (abipy.panels.nodes.StatusCards method) open_browser() (abipy.core.restapi.MpStructures method) (abipy.tools.devtools.HtmlDiff method) open_ddb() (abipy.flowtk.tasks.AtdepTask method) open_file_phononwebsite() (in module abipy.dfpt.phtk) open_files() (abipy.flowtk.flows.Flow method) open_gsr() (abipy.flowtk.nodes.FileNode method) open_gwr() (abipy.flowtk.tasks.GwrTask method) open_html() (in module abipy.panels.core) open_phbst() (abipy.flowtk.tasks.AnaddbTask method) open_phdos() (abipy.flowtk.tasks.AnaddbTask method) open_sigres() (abipy.flowtk.tasks.SigmaTask method) OpticError OpticInput (class in abipy.abio.inputs) OpticNcFile (class in abipy.electrons.optic) OpticReader (class in abipy.electrons.optic) OpticRobot (class in abipy.electrons.optic) OPTICS_FULLBZ (abipy.abio.enums.WFK_TASK attribute) OpticTask (class in abipy.flowtk.tasks) OpticVar (class in abipy.abio.inputs) OrbmagAnalyzer (class in abipy.electrons.orbmag) OrbmagFile (class in abipy.electrons.orbmag) order (abipy.core.symmetries.LatticeRotation property) ordered_intersection() (abipy.abio.robots.Robot static method) oscillator_strength (abipy.dfpt.anaddbnc.AnaddbNcFile property) OutNcFile (class in abipy.abio.outputs) outpath_from_ext() (abipy.flowtk.tasks.AnaddbTask method) (abipy.flowtk.tasks.AtdepTask method)

P

p_nu() (abipy.lumi.lineshape.Lineshape method) pad_fermie (abipy.electrons.ebands.ElectronBands attribute) pade() (in module abipy.tools.pade) Pair (class in abipy.ml.relax_scanner) pairs_enediff_dist() (abipy.ml.relax_scanner.RelaxScannerAnalyzer method) PanelWithAnaddbParams (class in abipy.panels.ddb) PanelWithEbandsRobot (class in abipy.panels.core) PanelWithElectronBands (class in abipy.panels.core) PanelWithFileInput (class in abipy.panels.ddb) PanelWithStructure (class in abipy.panels.core) PanelWithStructureInput (class in abipy.panels.ddb) paral (abipy.dfpt.raman.PowderIntensity attribute) ParalHints (class in abipy.flowtk.tasks) ParalHintsParser (class in abipy.flowtk.tasks) params (abipy.abio.outputs.OutNcFile property) (abipy.core.mixins.AbinitNcFile property) (abipy.dfpt.anaddbnc.AnaddbNcFile property) (abipy.dfpt.ddb.DdbFile property) (abipy.dfpt.gruneisen.GrunsNcFile property) (abipy.dfpt.phonons.PhbstFile property) (abipy.dfpt.phonons.PhdosFile property) (abipy.dynamics.hist.HistFile property) (abipy.electrons.abitk.KmeshFile property) (abipy.electrons.bse.MdfFile property) (abipy.electrons.eskw.EskwFile property) (abipy.electrons.fatbands.FatBandsFile property) (abipy.electrons.fold2bloch.Fold2BlochNcfile property) (abipy.electrons.gsr.GsrFile property) (abipy.electrons.gw.SigresFile property) (abipy.electrons.gwr.GwrFile property) (abipy.electrons.optic.OpticNcFile property) (abipy.electrons.orbmag.OrbmagFile property) (abipy.electrons.psps.PspsFile property) (abipy.electrons.scr.ScrFile property) (abipy.electrons.tchim.TchimFile property) (abipy.eph.a2f.A2fFile property) (abipy.eph.gkq.GkqFile property) (abipy.eph.gpath.GpathFile property) (abipy.eph.gstore.GstoreFile property) (abipy.eph.gwan.GwanFile property) (abipy.eph.rta.RtaFile property) (abipy.eph.sigeph.SigEPhFile property) (abipy.eph.transportfile.TransportFile property) (abipy.eph.v1qavg.V1qAvgFile property) (abipy.eph.v1qnu.V1qnuFile property) (abipy.eph.v1sym.V1symFile property) (abipy.eph.vpq.VpqFile property) (abipy.eph.wr.WrNcFile property) (abipy.wannier90.abiwan.AbiwanFile property) (abipy.waves.wfkfile.WfkFile property) params_list (abipy.tools.tensors.DielectricDataList property) parname (abipy.electrons.lruj.LrujResults attribute) parse() (abipy.abio.abivars.AbinitInputParser method) (abipy.flowtk.events.EventsParser method) (abipy.flowtk.scheduler_error_parsers.AbstractErrorParser method) (abipy.flowtk.tasks.ParalHintsParser method) parse_file_with_blocks() (in module abipy.dynamics.cpx) parse_file_with_header() (in module abipy.dynamics.cpx) parse_lammps_input() (in module abipy.dynamics.analyzer) parse_single() (abipy.flowtk.scheduler_error_parsers.AbstractErrorParser method) parse_strings() (in module abipy.scripts.abirun) parse_tdep_fc() (in module abipy.dfpt.converters) parse_tdep_lotosplitting() (in module abipy.dfpt.converters) parse_timers() (abipy.flowtk.works.Work method) parse_timing() (abipy.flowtk.flows.Flow method) (abipy.flowtk.tasks.AbinitTask method) ParserError partial (abipy.electrons.lobster.CoxpFile attribute) path (abipy.flowtk.utils.Directory property) (abipy.flowtk.utils.File property) path2group (abipy.eph.gstore.GstoreReader property) (abipy.eph.gwan.GwanReader property) path_in() (abipy.flowtk.utils.Directory method) path_in_workdir() (abipy.flowtk.works.Work method) path_join() (abipy.flowtk.utils.Directory method) pathname (abipy.flowtk.nodes.HistoryRecord attribute) Pauli (class in abipy.core.pauli) PAW_AEPSI (abipy.abio.enums.WFK_TASK attribute) pawecutdg (abipy.electrons.gsr.GsrFile property) pawujat (abipy.electrons.lruj.LrujResults attribute) PBSErrorParser (class in abipy.flowtk.scheduler_error_parsers) PbsProJob (class in abipy.flowtk.qjobs) PBSSTAT_TO_SLURM (abipy.flowtk.qjobs.PbsProJob attribute) pconfs (abipy.flowtk.tasks.AbinitTask property) pdos (abipy.electrons.lobster.LobsterDoscarFile attribute) perp (abipy.dfpt.raman.PowderIntensity attribute) persistent_id() (abipy.tools.serialization.PmgPickler method) persistent_load() (abipy.tools.serialization.PmgUnpickler method) pert_name (abipy.electrons.lruj.LrujResults attribute) PertKind (class in abipy.flowtk.finitediff) pertsy_qpt (abipy.eph.v1sym.V1symFile property) Perturbation (class in abipy.flowtk.finitediff) ph_df (abipy.dfpt.ddb.PhqData attribute) ph_ngqpt (abipy.eph.common.BaseEphReader property) ph_nvols (abipy.dfpt.vzsisa.Vzsisa property) ph_vol_scales (abipy.flowtk.vzsisa.VzsisaResults attribute) phbands (abipy.core.mixins.Has_PhononBands property) (abipy.dfpt.phonons.PhbstFile property) (abipy.eph.a2f.A2fFile property) (abipy.eph.gpath.GpathFile property) phbands_and_dos() (abipy.abio.inputs.AnaddbInput class method) phbands_dict (abipy.dfpt.phonons.PhononBandsPlotter property) phbands_list (abipy.dfpt.phonons.PhononBandsPlotter property) phbands_qpath_vol (abipy.dfpt.gruneisen.GrunsNcFile property) PhbstFile (class in abipy.dfpt.phonons) phddb_add_phonopy_opts() (in module abipy.scripts.abiml) phdispl_cart_bohr (abipy.eph.gkq.GkqFile property) phdispl_cart_qibz (abipy.dfpt.gruneisen.GrunsNcFile property) phdispl_red (abipy.eph.gkq.GkqFile property) phdos (abipy.dfpt.gruneisen.GrunsNcFile property) (abipy.dfpt.phonons.PhdosFile property) phdos_label_from_units() (in module abipy.core.abinit_units) phdos_list (abipy.dfpt.phonons.PhononDosPlotter property) phdos_strains_ac (abipy.flowtk.qha_2d.Qha2DData attribute) phdoses (abipy.dfpt.gruneisen.GrunsNcFile property) phdoses_dict (abipy.dfpt.phonons.PhononBandsPlotter property) phdoses_list (abipy.dfpt.phonons.PhononBandsPlotter property) PhdosFile (class in abipy.dfpt.phonons) PhdosReader (class in abipy.dfpt.phonons) phfactor_ev2units() (abipy.dfpt.phonons.PhononBands static method) (in module abipy.core.abinit_units) phfreqs_ha (abipy.eph.gkq.GkqFile property) phonon (abipy.flowtk.abiphonopy.PhonopyWork attribute) PhononBands (class in abipy.dfpt.phonons) PhononBandsPlotter (class in abipy.dfpt.phonons) PhononBandsPlotterPanel (class in abipy.panels.phonons) PhononDos (class in abipy.dfpt.phonons) PhononDosPlotter (class in abipy.dfpt.phonons) phonons_from_gsinput() (in module abipy.abio.factories) PhononScfCycle (class in abipy.flowtk.abiinspect) PhononTask (class in abipy.flowtk.tasks) PhononWfkqWork (class in abipy.flowtk.works) PhononWork (class in abipy.flowtk.works) phonopy_tasks (abipy.flowtk.abiphonopy.PhonopyWork attribute) phonopy_to_abinit() (in module abipy.dfpt.converters) PhonopyGruneisenWork (class in abipy.flowtk.abiphonopy) PhonopyWork (class in abipy.flowtk.abiphonopy) PhqData (class in abipy.dfpt.ddb) phunit_tag() (in module abipy.core.abinit_units) pickle_dump() (abipy.core.mixins.NotebookWriter method) (abipy.core.skw.ElectronInterpolator method) (abipy.electrons.scissors.ScissorsBuilder method) (abipy.eph.sigeph.TdepElectronBands method) (abipy.flowtk.flows.Flow method) (abipy.tools.serialization.HasPickleIO method) (abipy.tools.serialization.Serializable method) pickle_dump_and_write_script() (abipy.ml.aseml.AseResultsComparator method) pickle_dumps() (abipy.flowtk.flows.Flow method) pickle_file (abipy.flowtk.flows.Flow property) PICKLE_FNAME (abipy.flowtk.flows.Flow attribute) pickle_load() (abipy.core.mixins.NotebookWriter class method) (abipy.core.skw.ElectronInterpolator class method) (abipy.electrons.scissors.ScissorsBuilder class method) (abipy.eph.sigeph.TdepElectronBands class method) (abipy.flowtk.flows.Flow class method) (abipy.tools.serialization.HasPickleIO class method) (abipy.tools.serialization.Serializable class method) pickle_loads() (abipy.flowtk.flows.Flow class method) pickle_protocol (abipy.flowtk.flows.Flow attribute) pid_file (abipy.flowtk.flows.Flow property) (abipy.flowtk.launcher.PyFlowScheduler property) piezo_elastic() (abipy.abio.inputs.AnaddbInput class method) piezo_elastic_inputs_from_gsinput() (in module abipy.abio.factories) pjdos_symbol (abipy.dfpt.phonons.PhdosFile property) plot() (abipy.abio.outputs.AbinitLogFile method) (abipy.abio.outputs.AbinitOutputFile method) (abipy.core.func1d.Function1D method) (abipy.core.kpoints.KpointList method) (abipy.core.structure.Structure method) (abipy.dfpt.ddb.DielectricTensorGenerator method) (abipy.dfpt.msqdos.MsqDos method) (abipy.dfpt.phonons.PhononBands method) (abipy.dfpt.phonons.PhononBandsPlotter method) (abipy.dfpt.phonons.PhononDos method) (abipy.dfpt.phonons.PhononDosPlotter method) (abipy.dfpt.vsound.SoundVelocity method) (abipy.dynamics.analyzer.ArrheniusPlotter method) (abipy.dynamics.analyzer.DiffusionData method) (abipy.dynamics.analyzer.DiffusionDataList method) (abipy.dynamics.analyzer.Msdtt0 method) (abipy.dynamics.analyzer.Msdtt0List method) (abipy.dynamics.analyzer.SigmaBerend method) (abipy.dynamics.cpx.EvpFile method) (abipy.dynamics.hist.HistFile method) (abipy.electrons.bse.DielectricFunction method) (abipy.electrons.bse.MdfPlotter method) (abipy.electrons.bse.MultipleMdfPlotter method) (abipy.electrons.ebands.ElectronBands method) (abipy.electrons.ebands.ElectronBandsPlotter method) (abipy.electrons.ebands.ElectronDos method) (abipy.electrons.ebands.ElectronDosPlotter method) (abipy.electrons.lobster.CoxpFile method) (abipy.electrons.lobster.ICoxpFile method) (abipy.electrons.lobster.LobsterAnalyzer method) (abipy.electrons.lobster.LobsterDoscarFile method) (abipy.electrons.lruj.LrujAnalyzer method) (abipy.electrons.lruj.LrujResults method) (abipy.electrons.psps.PspsFile method) (abipy.eph.a2f.A2f method) (abipy.eph.a2f.A2fFile method) (abipy.eph.eph_plotter.EphPlotter method) (abipy.eph.gkq.GkqFile method) (abipy.eph.sigeph.EphSelfEnergy method) (abipy.eph.sigeph.QpTempState method) (abipy.eph.sigeph.TdepElectronBands method) (abipy.eph.v1qavg.V1qAvgFile method) (abipy.eph.v1qavg.V1qAvgRobot method) (abipy.flowtk.abiinspect.Relaxation method) (abipy.flowtk.abiinspect.ScfCycle method) (abipy.flowtk.utils.SparseHistogram method) (abipy.ml.aseml.AseMdLog method) (abipy.ml.aseml.AseTrajectoryPlotter method) (abipy.tools.fftprof.FFTBenchmark method) (abipy.tools.plotting.ArrayPlotter method) (abipy.tools.plotting.GenericDataFilePlotter method) (abipy.tools.plotting.GenericDataFilesPlotter method) (abipy.wannier90.abiwan.HWanR method) (abipy.wannier90.wout.WoutFile method) plot3D() (in module abipy.tools.elate.elastic) plot_3dlines() (abipy.electrons.arpes.ArpesPlotter method) plot_a2() (abipy.eph.a2f.A2f method) plot_a2f_convergence() (abipy.eph.a2f.A2fRobot method) plot_a2f_interpol() (abipy.eph.a2f.A2fFile method) plot_a2fdata_convergence() (abipy.eph.a2f.A2fRobot method) plot_a2fw_all() (abipy.eph.sigeph.SigEPhFile method) plot_a2fw_skb() (abipy.eph.sigeph.SigEPhFile method) plot_a2fw_skb_sum() (abipy.eph.sigeph.SigEPhFile method) plot_abc_vs_t() (abipy.dfpt.qha.AbstractQHA method) (abipy.dfpt.vzsisa.Vzsisa method) plot_abc_vs_t_4th() (abipy.dfpt.vzsisa.Vzsisa method) plot_abs_conv() (abipy.abio.robots.Robot static method) plot_ak_vs_temp() (abipy.electrons.arpes.ArpesPlotter method) plot_all() (abipy.dfpt.ddb.DielectricTensorGenerator method) plot_all_segments() (abipy.electrons.effmass_analyzer.EffMassAnalyzer method) plot_all_spectral_functions() (abipy.electrons.gwr.GwrFile method) plot_angle_vs_t() (abipy.dfpt.qha.AbstractQHA method) plot_angles_vs_t() (abipy.dfpt.vzsisa.Vzsisa method) plot_angles_vs_t_4th() (abipy.dfpt.vzsisa.Vzsisa method) plot_anharmonic_contribution() (abipy.dfpt.frozen_phonons.FrozenPhonon method) plot_ank_with_ebands() (abipy.eph.vpq.Polaron method) plot_array() (in module abipy.tools.plotting) plot_atan_logders() (abipy.ppcodes.oncv_plotter.MultiOncvPlotter method) (abipy.ppcodes.oncv_plotter.OncvPlotter method) plot_atanlogder_econv() (abipy.ppcodes.oncv_plotter.MultiOncvPlotter method) (abipy.ppcodes.oncv_plotter.OncvPlotter method) plot_atomic_levels() (abipy.ppcodes.oncv_plotter.MultiOncvPlotter method) (abipy.ppcodes.oncv_plotter.OncvPlotter method) plot_atoms() (abipy.core.structure.Structure method) plot_average_pairs() (abipy.electrons.lobster.CoxpFile method) plot_ax() (abipy.core.func1d.Function1D method) (abipy.dfpt.phonons.PhononBands method) (abipy.dynamics.hist.HistFile method) (abipy.electrons.bse.DielectricFunction method) (abipy.electrons.ebands.ElectronBands method) (abipy.electrons.ebands.ElectronDos method) plot_band_edges() (abipy.electrons.ebands.ElectronBandsPlotter method) plot_bo_energies() (abipy.dfpt.vzsisa.Vzsisa method) plot_bqnu_with_ddb() (abipy.eph.vpq.Polaron method) plot_bqnu_with_phbands() (abipy.eph.vpq.Polaron method) plot_bz() (abipy.core.mixins.Has_Structure method) (abipy.core.structure.Structure method) plot_centers_spread() (abipy.wannier90.wout.WoutFile method) plot_chi2() (abipy.electrons.optic.OpticNcFile method) plot_colored_matched() (abipy.dfpt.phonons.PhononBands method) plot_combiplot() (abipy.panels.ddb.DdbRobotPanel method) plot_conv() (abipy.dfpt.ddb.BecsData method) (abipy.dfpt.ddb.EpsinfData method) plot_convergence() (abipy.abio.robots.Robot method) plot_convergence_items() (abipy.abio.robots.Robot method) plot_convergence_rank3() (abipy.electrons.optic.OpticRobot method) plot_coxp_with_dos() (abipy.electrons.lobster.LobsterAnalyzer method) plot_delta_F_distance() (abipy.lumi.deltaSCF.DeltaSCF method) plot_delta_R_distance() (abipy.lumi.deltaSCF.DeltaSCF method) plot_den_formfact() (abipy.ppcodes.oncv_plotter.MultiOncvPlotter method) (abipy.ppcodes.oncv_plotter.OncvPlotter method) plot_densities() (abipy.ppcodes.oncv_plotter.MultiOncvPlotter method) (abipy.ppcodes.oncv_plotter.OncvPlotter method) plot_der_densities() (abipy.ppcodes.oncv_plotter.MultiOncvPlotter method) (abipy.ppcodes.oncv_plotter.OncvPlotter method) plot_der_potentials() (abipy.ppcodes.oncv_plotter.MultiOncvPlotter method) (abipy.ppcodes.oncv_plotter.OncvPlotter method) plot_diff_at_qpoint() (abipy.eph.v1sym.V1symFile method) plot_diff_with_other() (abipy.eph.gkq.GkqFile method) plot_dos_idos() (abipy.dfpt.phonons.PhononDos method) (abipy.electrons.ebands.ElectronDos method) plot_dos_vs_kmeshes() (abipy.core.skw.ElectronInterpolator method) plot_dos_vs_qmesh() (abipy.panels.ddb.DdbFilePanel method) plot_dyn_quad_conv() (abipy.dfpt.ddb.PhqData method) plot_e0w_qdirs() (abipy.dfpt.ddb.DielectricTensorGenerator method) plot_ebands() (abipy.core.mixins.Has_ElectronBands method) (abipy.flowtk.works.BandStructureWork method) plot_ebands_with_edos() (abipy.core.mixins.Has_ElectronBands method) (abipy.flowtk.works.BandStructureWork method) plot_edos() (abipy.eph.rta.RtaFile method) (abipy.eph.transportfile.TransportFile method) plot_edoses() (abipy.flowtk.works.BandStructureWork method) plot_eelf() (abipy.electrons.scr.ScrFile method) plot_eigen_energies() (abipy.lumi.deltaSCF.DeltaSCF method) plot_eigvec_qp() (abipy.electrons.gw.SigresFile method) plot_ejdosvc() (abipy.electrons.ebands.ElectronBands method) plot_ekmap_itemp() (abipy.electrons.arpes.ArpesPlotter method) plot_ekmap_temps() (abipy.electrons.arpes.ArpesPlotter method) plot_elastic_properties() (abipy.dfpt.anaddbnc.AnaddbNcRobot method) plot_elastic_vs_t() (abipy.flowtk.zsisa.ZsisaResults method) plot_elastic_vs_t_and_p() (abipy.flowtk.zsisa.ZsisaResults method) plot_emacro() (abipy.electrons.scr.ScrFile method) plot_emass() (abipy.electrons.effmass_analyzer.EffMassAnalyzer method) (abipy.electrons.effmass_analyzer.Segment method) plot_emission_spectrum() (abipy.lumi.deltaSCF.DeltaSCF method) (abipy.lumi.lineshape.Lineshape method) plot_emission_spectrum_help() (in module abipy.lumi.utils_lumi) plot_energies() (abipy.dfpt.qha.AbstractQHA method) (abipy.dfpt.qha.AbstractQmeshAnalyzer method) (abipy.dfpt.qha_2D.QHA_2D method) (abipy.dynamics.hist.HistFile method) (abipy.ml.aseml.AseResultsComparator method) plot_energies_traj() (abipy.ml.aseml.AseResultsComparator method) plot_eph_strength() (abipy.eph.a2f.A2fFile method) plot_eps0w() (abipy.panels.ddb.DdbFilePanel method) plot_erange_conv() (abipy.eph.vpq.VpqRobot method) plot_fatbands() (abipy.dfpt.phonons.PhononBands method) (abipy.electrons.orbmag.OrbmagAnalyzer method) plot_fatbands_lview() (abipy.electrons.fatbands.FatBandsFile method) plot_fatbands_mview() (abipy.electrons.fatbands.FatBandsFile method) plot_fatbands_siteview() (abipy.electrons.fatbands.FatBandsFile method) plot_fatbands_typeview() (abipy.electrons.fatbands.FatBandsFile method) plot_fatbands_with_pjdos() (abipy.electrons.fatbands.FatBandsFile method) plot_ffspl() (abipy.electrons.psps.PspsFile method) (abipy.electrons.psps.PspsRobot method) plot_fit() (abipy.electrons.scissors.ScissorsBuilder method) plot_fit_energies() (abipy.dfpt.frozen_phonons.FrozenPhonon method) plot_fit_freqs_dir() (abipy.dfpt.vsound.SoundVelocity method) plot_forces() (abipy.ml.aseml.AseResultsComparator method) plot_forces_traj() (abipy.ml.aseml.AseResultsComparator method) plot_four_BandStructures() (abipy.lumi.deltaSCF.DeltaSCF method)

plot_free_energies() (abipy.dfpt.qha_2D.QHA_2D method) plot_freqs_at_ggp() (abipy.electrons.scr.ScrFile method) plot_g_kpath() (abipy.eph.gpath.GpathFile method) plot_g_qpath() (abipy.eph.gpath.GpathFile method) (abipy.eph.gpath.GpathRobot method) plot_gibbs() (abipy.flowtk.zsisa.ZsisaResults method) plot_gkq2_diff() (abipy.eph.gkq.GkqRobot method) plot_gkq2_qpath() (abipy.eph.gkq.GkqRobot method) plot_gruns_bs() (abipy.dfpt.gruneisen.GrunsNcFile method) plot_gruns_scatter() (abipy.dfpt.gruneisen.GrunsNcFile method) plot_gvec() (abipy.eph.v1qavg.V1qAvgFile method) plot_harmonic_thermo() (abipy.dfpt.phonons.PhononDos method) (abipy.dfpt.phonons.PhononDosPlotter method) plot_hist() (abipy.dynamics.cpx.EvpFile method) plot_hwanr() (abipy.wannier90.abiwan.AbiwanRobot method) plot_ibte_mrta_serta_conv() (abipy.eph.rta.RtaRobot method) plot_ibte_vs_rta_rho() (abipy.eph.rta.RtaFile method) (abipy.eph.rta.RtaRobot method) plot_intensity() (abipy.dfpt.raman.Raman method) plot_ion_relaxation() (abipy.flowtk.works.RelaxWork method) plot_ioncell_relaxation() (abipy.flowtk.works.RelaxWork method) plot_itemp() (abipy.eph.sigeph.TdepElectronBands method) plot_itemp_with_lws_vs_e0() (abipy.eph.sigeph.TdepElectronBands method) plot_kconv() (abipy.eph.vpq.VpqRobot method) plot_kene_vs_ecut() (abipy.ppcodes.oncv_plotter.MultiOncvPlotter method) (abipy.ppcodes.oncv_plotter.OncvPlotter method) plot_ksbands_with_qpmarkers() (abipy.electrons.gw.SigresFile method) plot_labels() (in module abipy.display.mvtk) plot_lambda_convergence() (abipy.eph.a2f.A2fRobot method) plot_lattice() (abipy.dfpt.qha_2D.QHA_2D method) (abipy.ml.aseml.AseTrajectoryPlotter method) plot_lattice_convergence() (abipy.abio.robots.Robot method) plot_lattice_vectors() (in module abipy.display.mvtk) plot_lattice_vs_temp() (abipy.flowtk.zsisa.ZsisaResults method) plot_lattices() (abipy.dynamics.analyzer.MdAnalyzer method) plot_leo() (abipy.electrons.optic.OpticNcFile method) plot_leo_convergence() (abipy.electrons.optic.OpticRobot method) plot_line() (abipy.waves.pwwave.PWWaveFunction method) plot_line_neighbors() (abipy.waves.pwwave.PWWaveFunction method) plot_linear_epsilon() (abipy.electrons.optic.OpticNcFile method) plot_lineshape_1D_zero_temp() (abipy.lumi.deltaSCF.DeltaSCF method) plot_linewidths_sigeph() (abipy.eph.eph_plotter.EphPlotter method) plot_linopt() (abipy.electrons.optic.OpticNcFile method) plot_linopt_convergence() (abipy.electrons.optic.OpticRobot method) plot_longitudinal_fatbands() (abipy.dfpt.phonons.PhononBands method) plot_longitudinal_fraction() (abipy.dfpt.phonons.PhononBands method) plot_longitudinal_ifc() (abipy.dfpt.ifc.InteratomicForceConstants method) plot_longitudinal_ifc_ewald() (abipy.dfpt.ifc.InteratomicForceConstants method) plot_longitudinal_ifc_short_range() (abipy.dfpt.ifc.InteratomicForceConstants method) plot_lt_character() (abipy.dfpt.phonons.PhononBands method) plot_lws() (abipy.panels.sigeph.SigEPhFilePanel method) plot_lws_vs_e0() (abipy.electrons.ebands.ElectronBands method) (abipy.eph.sigeph.SigEPhFile method) (abipy.eph.sigeph.SigEPhRobot method) (abipy.eph.sigeph.TdepElectronBands method) plot_mat() (abipy.dynamics.analyzer.Msdtt0 method) plot_mat_diff() (abipy.electrons.tchim.TchimVsSus method) plot_mats_all_ggp() (abipy.electrons.tchim.TchimFile method) plot_mats_ggp() (abipy.electrons.tchim.TchimFile method) plot_maxw() (abipy.eph.v1qavg.V1qAvgFile method) (abipy.eph.v1qavg.V1qAvgRobot method) (abipy.eph.wr.WrNcFile method) plot_maxw_perts() (abipy.eph.v1qavg.V1qAvgFile method) plot_mayaview() (abipy.core.structure.Structure method) plot_mdfs() (abipy.electrons.bse.MdfFile method) plot_mdftype_cplx() (abipy.electrons.bse.MultipleMdfPlotter method) plot_mobility() (abipy.eph.rta.RtaFile method) (abipy.eph.transportfile.TransportFile method) plot_mobility_kconv() (abipy.eph.rta.RtaRobot method) plot_networkx() (abipy.flowtk.flows.Flow method) plot_nuterms() (abipy.eph.a2f.A2f method) plot_pawdos_terms() (abipy.electrons.fatbands.FatBandsFile method) plot_pdos_site() (abipy.electrons.lobster.LobsterDoscarFile method) plot_ph_conv() (abipy.dfpt.ddb.PhqData method) plot_phangmom() (abipy.dfpt.phonons.PhononBands method) plot_phbands() (abipy.core.mixins.Has_PhononBands method) plot_phbands_quad() (abipy.panels.ddb.DdbFilePanel method) plot_phbands_with_gruns() (abipy.dfpt.gruneisen.GrunsNcFile method) plot_phbs() (abipy.dfpt.qha.AbstractQHA method) plot_phdispl() (abipy.dfpt.phonons.PhononBands method) (abipy.dfpt.phonons.PhononBandsPlotter method) plot_phdispl_cartdirs() (abipy.dfpt.phonons.PhononBands method) plot_phdoses() (abipy.dfpt.gruneisen.GrunsNcFile method) plot_phonons_occ() (abipy.eph.eph_plotter.EphPlotter method) plot_pjdos_cartdirs_site() (abipy.dfpt.phonons.PhdosFile method) plot_pjdos_cartdirs_type() (abipy.dfpt.phonons.PhdosFile method) plot_pjdos_lview() (abipy.electrons.fatbands.FatBandsFile method) plot_pjdos_type() (abipy.dfpt.phonons.PhdosFile method) plot_pjdos_typeview() (abipy.electrons.fatbands.FatBandsFile method) plot_potentials() (abipy.ppcodes.oncv_plotter.MultiOncvPlotter method) (abipy.ppcodes.oncv_plotter.OncvPlotter method) plot_pots_at_qpoint() (abipy.eph.v1sym.V1symFile method) plot_projectors() (abipy.ppcodes.oncv_plotter.MultiOncvPlotter method) (abipy.ppcodes.oncv_plotter.OncvPlotter method) plot_q2vq() (abipy.electrons.psps.PspsFile method) (abipy.electrons.psps.PspsRobot method) plot_qpbands() (abipy.electrons.scissors.ScissorsBuilder method) plot_qpbands_ibz() (abipy.electrons.gw.SigresFile method) plot_qpbands_ibzt() (abipy.eph.sigeph.SigEPhFile method) plot_qpdata_conv_skb() (abipy.electrons.gw.SigresRobot method) (abipy.electrons.gwr.GwrRobot method) (abipy.eph.sigeph.SigEPhRobot method) plot_qpdata_t() (abipy.eph.sigeph.SigEPhFile method) plot_qpe_vs_e0() (abipy.electrons.scissors.ScissorsBuilder method) plot_qpfield_vs_e0() (abipy.electrons.gw.SigresRobot method) (abipy.electrons.gwr.GwrRobot method) (abipy.eph.sigeph.SigEPhRobot method) plot_qpgaps() (abipy.electrons.gw.SigresFile method) (abipy.panels.sigeph.SigEPhFilePanel method) plot_qpgaps_convergence() (abipy.electrons.gw.SigresRobot method) (abipy.electrons.gwr.GwrRobot method) (abipy.eph.sigeph.SigEPhRobot method) plot_qpgaps_t() (abipy.eph.sigeph.SigEPhFile method) (abipy.eph.sigeph.SigEPhRobot method) plot_qpoint_gpairs() (abipy.electrons.tchim.TchimVsSus method) plot_qps_vs_e0() (abipy.electrons.gw.SigresFile method) (abipy.electrons.gwr.GwrFile method) (abipy.eph.sigeph.SigEPhFile method) (abipy.panels.sigeph.SigEPhFilePanel method) plot_qpsolution() (abipy.eph.sigeph.EphSelfEnergy method) plot_qpsolution_sk() (abipy.eph.sigeph.SigEPhFile method) plot_qpsolution_skb() (abipy.eph.sigeph.SigEPhFile method) plot_qpsolution_sklineb() (abipy.eph.sigeph.SigEPhFile method) plot_qpt_distance() (abipy.dfpt.phonons.PhononBands method) plot_radial_wfs() (abipy.ppcodes.oncv_plotter.MultiOncvPlotter method) (abipy.ppcodes.oncv_plotter.OncvPlotter method) plot_reflectivity() (abipy.dfpt.ddb.DielectricTensorGenerator method) plot_scatter3d() (abipy.electrons.ebands.ElectronBands method) plot_scf_cycle() (abipy.eph.vpq.Polaron method) plot_scratew() (abipy.eph.sigeph.SigEPhFile method) plot_scratew_skb() (abipy.eph.sigeph.SigEPhFile method) plot_selfenergy_conv() (abipy.electrons.gw.SigresRobot method) (abipy.electrons.gwr.GwrRobot method) (abipy.eph.sigeph.SigEPhRobot method) plot_shg() (abipy.electrons.optic.OpticNcFile method) plot_shg_convergence() (abipy.electrons.optic.OpticRobot method) plot_sigma_berend() (abipy.dynamics.analyzer.DiffusionDataList method) plot_sigma_imag_axis() (abipy.electrons.gw.SigresFile method) (abipy.electrons.gw.SigresRobot method) (abipy.electrons.gwr.GwrFile method) plot_sigma_real_axis() (abipy.electrons.gwr.GwrFile method) plot_site_pairs_partial() (abipy.electrons.lobster.CoxpFile method) plot_site_pairs_total() (abipy.electrons.lobster.CoxpFile method) plot_spectral_function() (abipy.electrons.gwr.GwrFile method) (abipy.lumi.lineshape.Lineshape method) plot_spectral_functions() (abipy.electrons.gw.SigresFile method) plot_spilling() (abipy.electrons.fatbands.FatBandsFile method) plot_split() (abipy.electrons.ebands.ElectronBands method) plot_sqdt_atoms() (abipy.dynamics.analyzer.MdAnalyzer method) plot_sqdt_symbols() (abipy.dynamics.analyzer.MdAnalyzer method) (abipy.dynamics.analyzer.MultiMdAnalyzer method) plot_sqdt_symbols_tmax() (abipy.dynamics.analyzer.MdAnalyzer method) plot_stress_traj() (abipy.ml.aseml.AseResultsComparator method) plot_stresses() (abipy.ml.aseml.AseResultsComparator method) plot_structure() (in module abipy.display.mvtk) plot_surface() (abipy.electrons.arpes.ArpesPlotter method) plot_tau() (abipy.ppcodes.oncv_plotter.OncvPlotter method) plot_tau_fit_sk() (abipy.electrons.gwr.GwrFile method) plot_tau_isoe() (abipy.eph.rta.RtaFile method) plot_tau_vtau() (abipy.eph.sigeph.SigEPhFile method) plot_tc_vs_mustar() (abipy.eph.a2f.A2f method) plot_tcore_qspace() (abipy.electrons.psps.PspsFile method) (abipy.electrons.psps.PspsRobot method) plot_tcore_rspace() (abipy.electrons.psps.PspsFile method) (abipy.electrons.psps.PspsRobot method) plot_tdep() (abipy.eph.sigeph.EphSelfEnergy method) plot_tensor() (abipy.dfpt.msqdos.MsqDos method) plot_thermal_expansion() (abipy.dfpt.qha_2D.QHA_2D method) (abipy.flowtk.zsisa.ZsisaResults method) plot_thermal_expansion_coeff() (abipy.dfpt.qha.AbstractQHA method) (abipy.dfpt.qha.AbstractQmeshAnalyzer method) (abipy.dfpt.vzsisa.Vzsisa method) plot_thermal_expansion_coeff_4th() (abipy.dfpt.vzsisa.Vzsisa method) plot_thermal_expansion_coeff_abc() (abipy.dfpt.qha.AbstractQHA method) (abipy.dfpt.vzsisa.Vzsisa method) plot_thermal_expansion_coeff_abc_4th() (abipy.dfpt.vzsisa.Vzsisa method) plot_thermal_expansion_coeff_angles() (abipy.dfpt.vzsisa.Vzsisa method) plot_thermal_expansion_coeff_angles_4th() (abipy.dfpt.vzsisa.Vzsisa method) plot_transitions() (abipy.electrons.ebands.ElectronBands method) plot_transport_tensors_mu() (abipy.eph.rta.RtaFile method) plot_uiso() (abipy.dfpt.msqdos.MsqDos method) plot_unfolded() (abipy.electrons.fold2bloch.Fold2BlochNcfile method) plot_unit_cell() (in module abipy.display.mvtk) (in module abipy.tools.plotting) plot_up_minus_down() (abipy.electrons.ebands.ElectronDos method) plot_vol_vs_t() (abipy.dfpt.qha.AbstractQHA method) (abipy.dfpt.qha.AbstractQmeshAnalyzer method) (abipy.dfpt.vzsisa.Vzsisa method) plot_vol_vs_t_4th() (abipy.dfpt.vzsisa.Vzsisa method) plot_vs_e0() (abipy.eph.sigeph.QpTempList method) plot_vs_w() (abipy.dfpt.ddb.DielectricTensorGenerator method) plot_vsound() (abipy.panels.ddb.DdbFilePanel method) plot_vtau() (abipy.ppcodes.oncv_plotter.OncvPlotter method) plot_vtk() (abipy.core.structure.Structure method) plot_vvtau_dos() (abipy.eph.rta.RtaFile method) (abipy.eph.transportfile.TransportFile method) plot_wigner_seitz() (in module abipy.display.mvtk) plot_with_a2f() (abipy.eph.a2f.A2fFile method) plot_with_ebands() (abipy.wannier90.abiwan.AbiwanFile method) plot_with_edos() (abipy.electrons.ebands.ElectronBands method) plot_with_lambda() (abipy.eph.a2f.A2f method) plot_with_phdos() (abipy.dfpt.phonons.PhononBands method) plot_without_asr_dipdip() (abipy.panels.ddb.DdbFilePanel method) (abipy.panels.ddb.DdbRobotPanel method) plot_xrd() (abipy.core.structure.Structure method) plot_xvals_or_xstr_ax() (abipy.abio.robots.Robot static method) plot_xy_with_hue() (abipy.abio.robots.Robot static method) plotly() (abipy.core.func1d.Function1D method) (abipy.core.kpoints.KpointList method) (abipy.core.structure.Structure method) (abipy.dfpt.ddb.DielectricTensorGenerator method) (abipy.dfpt.phonons.PhononBands method) (abipy.dfpt.phonons.PhononDos method) (abipy.dfpt.vsound.SoundVelocity method) (abipy.dynamics.hist.HistFile method) (abipy.electrons.ebands.ElectronBands method) (abipy.electrons.ebands.ElectronBandsPlotter method) (abipy.electrons.ebands.ElectronDos method) (abipy.electrons.ebands.ElectronDosPlotter method) (abipy.flowtk.abiinspect.ScfCycle method) plotly_bz() (abipy.core.structure.Structure method) plotly_dos_idos() (abipy.dfpt.phonons.PhononDos method) (abipy.electrons.ebands.ElectronDos method) plotly_energies() (abipy.dynamics.hist.HistFile method) plotly_expose() (abipy.core.mixins.NotebookWriter method) plotly_fatbands() (abipy.dfpt.phonons.PhononBands method) plotly_fatbands_lview() (abipy.electrons.fatbands.FatBandsFile method) plotly_fatbands_typeview() (abipy.electrons.fatbands.FatBandsFile method) plotly_fatbands_with_pjdos() (abipy.electrons.fatbands.FatBandsFile method) plotly_fit_freqs_dir() (abipy.dfpt.vsound.SoundVelocity method) plotly_harmonic_thermo() (abipy.dfpt.phonons.PhononDos method) (abipy.dfpt.phonons.PhononDosPlotter method) plotly_pjdos_lview() (abipy.electrons.fatbands.FatBandsFile method) plotly_pjdos_type() (abipy.dfpt.phonons.PhdosFile method) plotly_pjdos_typeview() (abipy.electrons.fatbands.FatBandsFile method) plotly_template (abipy.panels.core.AbipyParameterized attribute) plotly_traces() (abipy.core.func1d.Function1D method) (abipy.dfpt.phonons.PhononBands method) (abipy.dynamics.hist.HistFile method) (abipy.electrons.ebands.ElectronBands method) (abipy.electrons.ebands.ElectronDos method) plotly_up_minus_down() (abipy.electrons.ebands.ElectronDos method) plotly_with_edos() (abipy.electrons.ebands.ElectronBands method) plotly_with_phdos() (abipy.dfpt.phonons.PhononBands method) plottable_from_outfile() (in module abipy.flowtk.abiinspect) plotters (abipy.ppcodes.oncv_plotter.MultiOncvPlotter property) ply() (in module abipy.panels.core) pmg_pickle_dump() (in module abipy.tools.serialization) pmg_pickle_load() (in module abipy.tools.serialization) pmg_serialize() (in module abipy.tools.serialization) PmgPickler (class in abipy.tools.serialization) PmgUnpickler (class in abipy.tools.serialization) pn_serve_parser() (in module abipy.tools.cli_parsers) Poisson() (abipy.tools.elate.elastic.Elastic method) (abipy.tools.elate.elastic.ElasticOrtho method) Poisson2D() (abipy.tools.elate.elastic.Elastic method) poisson3D() (abipy.tools.elate.elastic.Elastic method) POISSON3D() (in module abipy.tools.elate.elastic) Polarizability (class in abipy.electrons.scr) Polaron (class in abipy.eph.vpq) polaron_spin (abipy.eph.vpq.VpqFile property) pool_nprocs_pmode() (in module abipy.tools.parallel) pop_irdvars() (abipy.abio.inputs.AbinitInput method) pop_key() (abipy.dynamics.analyzer.ArrheniusPlotter method) pop_label() (abipy.abio.robots.Robot method) pop_par_vars() (abipy.abio.inputs.AbinitInput method) pop_tolerances() (abipy.abio.inputs.AbinitInput method) pop_vars() (abipy.abio.inputs.AbstractInput method) pos (abipy.flowtk.works.Work property) pos_str (abipy.flowtk.works.Work property) poscar_string (abipy.core.structure.Structure property) posneg_marker() (abipy.tools.plotting.Marker method) postpone_on_all_ok() (abipy.flowtk.works.Work method) potentials (abipy.ppcodes.oncv_parser.OncvParser property) PotNcFile (class in abipy.electrons.denpot) PowderIntensity (class in abipy.dfpt.raman) pprint() (abipy.core.atom.RadialFunction method) pressure (abipy.electrons.gsr.GsrFile property) (abipy.ml.aseml.AseResults property) pressure_gpa (abipy.dfpt.qha_general_stress.ThermalData attribute) (abipy.flowtk.zsisa.ThermalRelaxEntry attribute) print_atoms() (in module abipy.ml.aseml) print_bz2ibz() (abipy.core.kpoints.Ktables method) print_dataframe() (in module abipy.tools.printing) print_doc() (in module abipy.tools.notebooks) print_efg_results() (abipy.electrons.gsr.GsrFile method) print_hardware_system_info() (in module abipy.tools.devtools) print_mat_entries() (abipy.dfpt.qha_general_stress.QHA_ZSISA method) print_neighbors() (abipy.core.structure.Structure method) print_qps() (abipy.electrons.gw.SigresFile method) print_results() (abipy.core.restapi.DatabaseStructures method) print_source() (in module abipy.tools.notebooks) print_source_in_module() (in module abipy.tools.notebooks) print_stats_arr() (in module abipy.tools.numtools) print_vlist() (in module abipy.scripts.abidoc) printTitle() (in module abipy.tools.elate.elastic) processes (abipy.flowtk.works.Work property) Product (class in abipy.flowtk.nodes) product() (abipy.abio.inputs.AbinitInput method) product_dict() (in module abipy.abio.inputs) products (abipy.flowtk.nodes.Dependency property) (abipy.flowtk.nodes.FileNode property) prof_main() (in module abipy.tools.cli_parsers) profile() (in module abipy.tools.devtools) project_mats() (abipy.core.pauli.Pauli method) project_name (abipy.flowtk.psrepos.JthRepo attribute) (abipy.flowtk.psrepos.OncvpspRepo attribute) projectors (abipy.ppcodes.oncv_parser.OncvParser property) prune_ord() (in module abipy.tools.numtools) ps (abipy.ppcodes.oncv_parser.AePsNamedTuple attribute) ps_generator (abipy.flowtk.psrepos.JthRepo attribute) (abipy.flowtk.psrepos.OncvpspRepo attribute) ps_type (abipy.flowtk.psrepos.JthRepo property) (abipy.flowtk.psrepos.OncvpspRepo property) (abipy.flowtk.psrepos.PseudosRepo property) pseudos (abipy.abio.inputs.AbinitInput property) (abipy.abio.inputs.MultiDataset property) (abipy.flowtk.tasks.AbinitTask property) pseudos_abivars (abipy.abio.inputs.AbinitInput property) PseudosRepo (class in abipy.flowtk.psrepos) psfile (abipy.panels.oncvpsp_gui.OncvInput attribute) (abipy.ppcodes.oncv_parser.OncvParser attribute) psp8_get_densities() (in module abipy.ppcodes.oncv_plotter) PspsFile (class in abipy.electrons.psps) PspsReader (class in abipy.electrons.psps) PspsRobot (class in abipy.electrons.psps) push_exceptions() (abipy.flowtk.nodes.NodeResults method) pws() (abipy.panels.core.AbipyParameterized method) pws_col() (abipy.panels.core.AbipyParameterized method) pws_row() (abipy.panels.core.AbipyParameterized method) PWWaveFunction (class in abipy.waves.pwwave) pyfile (abipy.flowtk.flows.Flow property) PyFlowScheduler (class in abipy.flowtk.launcher) pygmentize() (abipy.tools.devtools.HtmlDiff method) PyLauncher (class in abipy.flowtk.launcher) PythonScript (class in abipy.tools.iotools)

Q

qadapter (abipy.flowtk.tasks.TaskManager property) qads (abipy.flowtk.tasks.TaskManager property) qcut (abipy.panels.oncvpsp_gui.Lparams attribute) qcut_dir (abipy.panels.oncvpsp_gui.OncvGui attribute) qcut_num (abipy.panels.oncvpsp_gui.OncvGui attribute) qcut_step (abipy.panels.oncvpsp_gui.OncvGui attribute) Qe2Extxyz (class in abipy.dynamics.cpx) qfrac_coords (abipy.electrons.bse.DielectricFunction property) (abipy.electrons.bse.MdfFile property) QHA (class in abipy.dfpt.qha) Qha2DData (class in abipy.flowtk.qha_2d) Qha2dFlow (class in abipy.flowtk.qha_2d) Qha2dWork (class in abipy.flowtk.qha_2d) QHA3P (class in abipy.dfpt.qha) QHA3PF (class in abipy.dfpt.qha) QHA_2D (class in abipy.dfpt.qha_2D) qha_model (abipy.flowtk.zsisa.ZsisaResults attribute) QHA_ZSISA (class in abipy.dfpt.qha_general_stress) QhaModel (class in abipy.dfpt.qha_general_stress) QHAQmeshAnalyzer (class in abipy.dfpt.qha) qibz (abipy.dfpt.gruneisen.GrunsNcFile property) qindex() (abipy.dfpt.ddb.DdbFile method) (abipy.dfpt.phonons.PhbstFile method) (abipy.dfpt.phonons.PhononBands method) qindex_qpoint() (abipy.dfpt.phonons.PhbstFile method) (abipy.dfpt.phonons.PhononBands method) qp_dirgaps_otms_t (abipy.eph.sigeph.SigEPhFile property) qp_dirgaps_t (abipy.eph.sigeph.SigEPhFile property) qpeme0 (abipy.electrons.gw.QPState property) (abipy.eph.sigeph.QpTempState property) qpenes (abipy.electrons.gw.SigresFile property) qpgaps (abipy.electrons.gw.SigresFile property) qplist_spin (abipy.electrons.gw.SigresFile property) (abipy.electrons.gwr.GwrFile property) (abipy.eph.sigeph.SigEPhFile property)

qpoint (abipy.dfpt.ddb.PhqData attribute) (abipy.eph.gkq.GkqFile property) qpoints (abipy.dfpt.ddb.DdbFile property) (abipy.dfpt.phonons.PhbstFile property) (abipy.electrons.bse.MdfFile property) (abipy.electrons.bse.MdfReader property) (abipy.eph.v1qavg.V1qAvgFile property) (abipy.eph.v1qavg.V1qAvgRobot property) (abipy.eph.v1sym.V1symFile property) (abipy.eph.vpq.Polaron property) QPState (class in abipy.electrons.gw) qpt_cart_coords (abipy.dfpt.frozen_phonons.FrozenPhonon property) QptdmWork (class in abipy.flowtk.works) QpTempList (class in abipy.eph.sigeph) QpTempState (class in abipy.eph.sigeph) qptrlatt (abipy.dfpt.phonons.PhdosFile property) qpz0_dirgaps (abipy.electrons.gwr.GwrFile property) QState (class in abipy.core.atom) QTYPE (abipy.flowtk.qjobs.BlueGeneJob attribute) (abipy.flowtk.qjobs.MoabJob attribute) (abipy.flowtk.qjobs.PbsProJob attribute) (abipy.flowtk.qjobs.QueueJob attribute) (abipy.flowtk.qjobs.SgeJob attribute) (abipy.flowtk.qjobs.ShellJob attribute) (abipy.flowtk.qjobs.SlurmJob attribute) (abipy.flowtk.qjobs.TorqueJob attribute) quadquad (abipy.panels.ddb.PanelWithAnaddbParams attribute) quadratic_fit_function() (in module abipy.dfpt.frozen_phonons) queryElasticityV2() (in module abipy.tools.elate.elastic) queryMaterials() (in module abipy.tools.elate.elastic) QueueJob (class in abipy.flowtk.qjobs) quote (abipy.dynamics.analyzer.DiffusionData attribute)

R

r2f2_integral() (abipy.core.atom.RadialFunction method) r2f_integral() (abipy.core.atom.RadialFunction method) radial_wfs (abipy.ppcodes.oncv_parser.OncvParser property) RadialFunction (class in abipy.core.atom) RadialWaveFunction (class in abipy.core.atom) Raman (class in abipy.dfpt.raman) random() (abipy.core.mesh3d.Mesh3D method) Range (class in abipy.abio.abivar_database.variables) range_from_str() (in module abipy.tools.cli_parsers) rapidfire() (abipy.flowtk.flows.Flow method) (abipy.flowtk.launcher.PyLauncher method) rc (abipy.panels.oncvpsp_gui.Lparams attribute) rc5 (abipy.panels.oncvpsp_gui.OncvInput attribute) rc5_dir (abipy.panels.oncvpsp_gui.OncvGui attribute) rc5_num (abipy.panels.oncvpsp_gui.OncvGui attribute) rc5_step (abipy.panels.oncvpsp_gui.OncvGui attribute) rc_dir (abipy.panels.oncvpsp_gui.OncvGui attribute) rc_l (abipy.ppcodes.oncv_parser.OncvParser property) rc_list() (in module abipy.core.kpoints) rc_num (abipy.panels.oncvpsp_gui.OncvGui attribute) rc_step (abipy.panels.oncvpsp_gui.OncvGui attribute) rcfact (abipy.panels.oncvpsp_gui.OncvInput attribute) rcfact_dir (abipy.panels.oncvpsp_gui.OncvGui attribute) rcfact_num (abipy.panels.oncvpsp_gui.OncvGui attribute) rcfact_step (abipy.panels.oncvpsp_gui.OncvGui attribute) re_fan0 (abipy.eph.sigeph.QpTempState property) re_qpe (abipy.electrons.gw.QPState property) (abipy.eph.sigeph.QpTempState property) re_sig0 (abipy.eph.sigeph.QpTempState property) read() (abipy.flowtk.utils.File method) read_a2f() (abipy.eph.a2f.A2fReader method) read_a2feph_skb() (abipy.eph.sigeph.SigmaPhReader method) read_all_gkq() (abipy.eph.gkq.GkqFile method) read_all_structures() (abipy.dynamics.hist.HistReader method) read_allqps() (abipy.eph.sigeph.SigmaPhReader method) read_amu_symbol() (abipy.iotools.ETSF_Reader method) read_amuz_dict() (abipy.dfpt.gruneisen.GrunsReader method) read_cart_forces() (abipy.dynamics.hist.HistReader method) read_cart_stress_tensors() (abipy.dynamics.hist.HistReader method) read_coresd() (abipy.electrons.psps.PspsReader method) read_cumulant_skb() (abipy.eph.cumulant.CumulantPhReader method) read_dyn_quad_from_file() (abipy.dfpt.phonons.PhononBands method) read_ebands_which_fixed() (abipy.eph.gpath.GpathReader method) read_edos() (abipy.eph.a2f.A2fReader method) read_eelf() (abipy.electrons.scr.ScrReader method) read_emacro_lf() (abipy.electrons.scr.ScrReader method) read_emacro_nlf() (abipy.electrons.scr.ScrReader method) read_eterms() (abipy.dynamics.hist.HistReader method) read_etotals() (abipy.flowtk.works.Work method) read_exc_mdf() (abipy.electrons.bse.MdfReader method) read_gkq_kpoint() (abipy.eph.gkq.GkqFile method) read_gwnlf_mdf() (abipy.electrons.bse.MdfReader method) read_lineps() (abipy.electrons.optic.OpticReader method) read_msq_dos() (abipy.dfpt.phonons.PhdosReader method) read_ngfft3() (abipy.iotools.ETSF_Reader method) read_non_anal_from_file() (abipy.dfpt.phonons.PhononBands method) read_params() (abipy.electrons.bse.MdfReader method) (abipy.electrons.scr.ScrReader method) read_phbands() (abipy.eph.gpath.GpathReader method) read_phbands_on_qpath() (abipy.dfpt.gruneisen.GrunsReader method) read_phbands_qpath() (abipy.eph.a2f.A2fReader method) read_phdos() (abipy.dfpt.phonons.PhdosReader method) read_phdoses() (abipy.dfpt.gruneisen.GrunsReader method) read_phgamma_qpath() (abipy.eph.a2f.A2fReader method) read_phlambda_qpath() (abipy.eph.a2f.A2fReader method) read_pjdos_atdir() (abipy.dfpt.phonons.PhdosReader method) read_pjdos_symbol_dict() (abipy.dfpt.phonons.PhdosReader method) read_pjdos_symbol_xyz_dict() (abipy.dfpt.phonons.PhdosReader method) read_pjdos_type() (abipy.dfpt.phonons.PhdosReader method) read_projectors() (abipy.electrons.psps.PspsReader method) read_qp() (abipy.eph.cumulant.CumulantPhReader method) (abipy.eph.sigeph.SigmaPhReader method) read_qplist_sk() (abipy.eph.sigeph.SigmaPhReader method) read_reduced_forces() (abipy.dynamics.hist.HistReader method) read_rpanlf_mdf() (abipy.electrons.bse.MdfReader method) read_sigee_skb() (abipy.electrons.gw.SigresFile method) read_sigeph_skb() (abipy.eph.sigeph.SigmaPhReader method) read_string() (abipy.iotools.ETSF_Reader method) read_structure() (abipy.iotools.ETSF_Reader method) read_structure_postac_ucmats() (in module abipy.dynamics.analyzer) read_structures() (abipy.dfpt.gruneisen.GrunsReader method) read_tcorespl() (abipy.electrons.psps.PspsReader method) read_tensor3_terms() (abipy.electrons.optic.OpticReader method) read_v1_at_iq() (abipy.eph.v1sym.V1symFile method) read_vlspl() (abipy.electrons.psps.PspsReader method) read_wggmat() (abipy.electrons.scr.ScrReader method) read_wslice() (abipy.electrons.scr.ScrReader method) readlines() (abipy.flowtk.utils.File method) real (abipy.core.func1d.Function1D property) received_signal() (abipy.flowtk.qjobs.QueueJob method) reciprocal_lattice (abipy.core.kpoints.KpointList property) (abipy.core.structure.Structure property) (abipy.electrons.ebands.ElectronBands property) refine() (abipy.core.structure.Structure method) reflectivity() (abipy.dfpt.ddb.DielectricTensorGenerator method) (abipy.tools.tensors.DielectricTensor method) (in module abipy.electrons.optic) register() (abipy.flowtk.works.Work method) register_decorator() (abipy.abio.inputs.AbinitInput method) register_flow_exception() (abipy.flowtk.launcher.MultiFlowScheduler method) register_gridfs_files() (abipy.flowtk.nodes.NodeResults method) register_task() (abipy.flowtk.flows.Flow method) (abipy.flowtk.works.Work method) register_work() (abipy.flowtk.flows.Flow method) register_work_from_cbk() (abipy.flowtk.flows.Flow method) relativistic (abipy.ppcodes.oncv_parser.OncvParser property) relax_atoms() (in module abipy.ml.aseml) Relaxation (class in abipy.flowtk.abiinspect) RelaxationProfiler (class in abipy.ml.ml_relax) RelaxConvergenceWarning (class in abipy.flowtk.events) RELAXED (abipy.flowtk.finitediff.IonsMode attribute)

RelaxScanner (class in abipy.ml.relax_scanner) RelaxScannerAnalyzer (class in abipy.ml.relax_scanner) RelaxTask (class in abipy.flowtk.tasks) RelaxWork (class in abipy.flowtk.works) reload() (abipy.flowtk.flows.Flow method) relpath (abipy.flowtk.utils.Directory property) (abipy.flowtk.utils.File property) relworkdir (abipy.flowtk.nodes.Node property) remap_labels() (abipy.abio.robots.Robot method) remove() (abipy.abio.robots.Robot method) (abipy.flowtk.utils.File method) remove_block() (abipy.dfpt.ddb.DdbFile method) remove_deps() (abipy.flowtk.nodes.Node method) remove_disordered() (in module abipy.scripts.abicomp) remove_duplicated() (abipy.core.kpoints.KpointList method) remove_exts() (abipy.flowtk.utils.Directory method) remove_flows_with_status() (abipy.flowtk.launcher.MultiFlowScheduler method) remove_state() (abipy.core.atom.AtomicConfiguration method) remove_tags() (abipy.abio.inputs.AbinitInput method) (abipy.abio.inputs.MultiDataset method) remove_vars() (abipy.abio.inputs.AbstractInput method) removeHTMLTags() (in module abipy.tools.elate.elastic) rename_abiext() (abipy.flowtk.utils.Directory method) replace_block_for_qpoint() (abipy.dfpt.ddb.DdbFile method) replicate() (abipy.abio.inputs.AbinitInput method) replicate_input() (abipy.abio.inputs.MultiDataset class method) repo_from_name() (in module abipy.flowtk.psrepos) report_eigvals() (abipy.electrons.orbmag.OrbmagAnalyzer method) report_exception() (abipy.flowtk.events.EventsParser method) repos_from_names() (in module abipy.flowtk.psrepos) repr_html_from_abinit_string() (in module abipy.abio.abivars_db) resample_step() (abipy.dynamics.analyzer.MdAnalyzer method) resample_time() (abipy.dynamics.analyzer.MdAnalyzer method) reset() (abipy.flowtk.launcher.ScriptEditor method) (abipy.ml.aseml.CalcBuilder method) reset_from_scratch() (abipy.flowtk.tasks.AbinitTask method) (abipy.flowtk.tasks.OpticTask method) reshape() (abipy.core.mesh3d.Mesh3D method) residm (abipy.electrons.gsr.GsrFile property) RESPFN (abipy.abio.enums.RUNL attribute) restart() (abipy.flowtk.tasks.AbinitTask method) (abipy.flowtk.tasks.NscfTask method) (abipy.flowtk.tasks.RelaxTask method) (abipy.flowtk.tasks.ScfTask method) (abipy.flowtk.tasks.SigmaTask method) restart_md() (in module abipy.ml.aseml) Results (abipy.flowtk.flows.Flow attribute) (abipy.flowtk.nodes.Node attribute) (abipy.flowtk.tasks.AbinitTask attribute) retcode (abipy.ppcodes.ppgen.OncvGenerator attribute) return_corrections() (abipy.flowtk.scheduler_error_handlers.SchedulerErrorHandler method) return_straceback_ifexc() (in module abipy.tools.decorators) return_to_top_html() (in module abipy.panels.core) rlmax (abipy.panels.oncvpsp_gui.OncvInput attribute) rm_and_build() (abipy.flowtk.flows.Flow method) rm_indatadir() (abipy.flowtk.works.Work method) rm_multiple_spaces() (in module abipy.tools.text) rm_outdatadir() (abipy.flowtk.works.Work method) rm_tmpdatadir() (abipy.flowtk.works.Work method) rmax (abipy.core.atom.RadialFunction property) rmtree() (abipy.flowtk.flows.Flow method) (abipy.flowtk.utils.Directory method) (abipy.flowtk.works.Work method) (abipy.ml.aseml.MlBase method) Robot (class in abipy.abio.robots) RobotPythonScript (class in abipy.abio.robots) RobotWithFileInput (class in abipy.panels.ddb) rocksalt() (abipy.core.structure.Structure class method) root_inv (abipy.core.symmetries.LatticeRotation property) roots (abipy.core.atom.RadialFunction property) RPA_ENERGY (abipy.abio.enums.GWR_TASK attribute) rpanlf_mdf (abipy.electrons.bse.MdfFile property) rpoint() (abipy.core.mesh3d.Mesh3D method) rpoints (abipy.core.mesh3d.Mesh3D property) rreplace() (in module abipy.tools.text) rsize (abipy.core.atom.RadialFunction property) RtaFile (class in abipy.eph.rta) RtaRobot (class in abipy.eph.rta) RTTDDFT (abipy.abio.enums.RUNL attribute) run() (abipy.electrons.lruj.LrujAnalyzer method) (abipy.flowtk.wrappers.Abitk method) (abipy.flowtk.wrappers.Lruj method) (abipy.ml.aseml.FrozenPhononMl method) (abipy.ml.aseml.GsMl method) (abipy.ml.aseml.MlCompareNNs method) (abipy.ml.aseml.MlCwfEos method) (abipy.ml.aseml.MlEos method) (abipy.ml.aseml.MlGsList method) (abipy.ml.aseml.MlMd method) (abipy.ml.aseml.MlNeb method) (abipy.ml.aseml.MlOrderer method) (abipy.ml.aseml.MlRelaxer method) (abipy.ml.aseml.MlRelaxerFromMdTraj method) (abipy.ml.aseml.MlValidateWithAbinitio method) (abipy.ml.aseml.MolecularDynamics method) (abipy.ml.aseml.MultiMlNeb method) (abipy.ml.ml_phonopy.MlPhonopy method) (abipy.ml.ml_phonopy.MlPhonopyWithDDB method) (abipy.ml.ml_phonopy.MlVZSISAQHAPhonopy method) (abipy.ml.ml_relax.RelaxationProfiler method) (abipy.ml.relax_scanner.RelaxScanner method) run_flow() (in module abipy.scripts.abicheck) run_in_shell() (abipy.abio.inputs.AbinitInput method) run_nn_name_set_name() (abipy.ml.aseml.MlCwfEos method) run_pair() (abipy.ml.relax_scanner.RelaxScannerAnalyzer method) run_psgen() (in module abipy.panels.oncvpsp_gui) run_qlist() (abipy.dfpt.qha.QHAQmeshAnalyzer method) run_start_count() (abipy.ml.relax_scanner.RelaxScanner method) RUNL (class in abipy.abio.enums) runlevel (abipy.abio.inputs.AbinitInput property) RX_MODE (class in abipy.ml.aseml)

S

s2itup() (in module abipy.core.abinit_units) S_ABICRITICAL (abipy.flowtk.nodes.Node attribute) S_abs() (abipy.lumi.deltaSCF.DeltaSCF method) S_CANCELLED (abipy.flowtk.qjobs.QueueJob attribute) S_COMPLETED (abipy.flowtk.qjobs.QueueJob attribute) S_DONE (abipy.flowtk.nodes.Node attribute) S_em() (abipy.lumi.deltaSCF.DeltaSCF method) S_ERROR (abipy.flowtk.nodes.Node attribute) S_FAILED (abipy.flowtk.qjobs.QueueJob attribute) S_hbarOmega() (abipy.lumi.lineshape.Lineshape method) S_INIT (abipy.flowtk.nodes.Node attribute) S_LOCKED (abipy.flowtk.nodes.Node attribute) S_NODEFAIL (abipy.flowtk.qjobs.QueueJob attribute) S_nu() (abipy.lumi.lineshape.Lineshape method) S_OK (abipy.flowtk.nodes.Node attribute) S_PENDING (abipy.flowtk.qjobs.QueueJob attribute) S_PREEMPTED (abipy.flowtk.qjobs.QueueJob attribute) S_QCRITICAL (abipy.flowtk.nodes.Node attribute) S_READY (abipy.flowtk.nodes.Node attribute) S_RESIZING (abipy.flowtk.qjobs.QueueJob attribute) S_RUN (abipy.flowtk.nodes.Node attribute) S_RUNNING (abipy.flowtk.qjobs.QueueJob attribute) S_SUB (abipy.flowtk.nodes.Node attribute) S_SUSPENDED (abipy.flowtk.qjobs.QueueJob attribute) S_TIMEOUT (abipy.flowtk.qjobs.QueueJob attribute) S_tot() (abipy.lumi.lineshape.Lineshape method) S_UNCONVERGED (abipy.flowtk.nodes.Node attribute) S_UNKNOWN (abipy.flowtk.qjobs.QueueJob attribute) saturation_slider() (in module abipy.display.utils) save_lastnode_id() (in module abipy.flowtk.nodes) save_structure() (in module abipy.scripts.abistruct) savefig() (abipy.ml.aseml.MlBase method) sbatch() (abipy.flowtk.qutils.SlurmJobArray method) scale_lattice() (abipy.core.structure.Structure method) scan() (abipy.ppcodes.oncv_parser.OncvParser method) scan_dir() (abipy.abio.robots.Robot method) scattering_wfs (abipy.ppcodes.oncv_parser.OncvParser property) scdims (abipy.flowtk.abiphonopy.PhonopyGruneisenWork attribute) (abipy.flowtk.abiphonopy.PhonopyWork attribute) scf_df_state (abipy.eph.vpq.Polaron property) scf_for_phonons() (in module abipy.abio.factories) scf_phonons_inputs() (in module abipy.abio.factories) scf_piezo_elastic_inputs() (in module abipy.abio.factories) scf_tolvar (abipy.abio.inputs.AbinitInput property) ScfConvergenceWarning (class in abipy.flowtk.events) ScfCycle (class in abipy.flowtk.abiinspect) ScfTask (class in abipy.flowtk.tasks) scheduler_adapter_solutions (abipy.flowtk.scheduler_error_parsers.AbstractError property) (abipy.flowtk.scheduler_error_parsers.MemoryCancelError property) (abipy.flowtk.scheduler_error_parsers.NodeFailureError property) (abipy.flowtk.scheduler_error_parsers.TimeCancelError property) SchedulerErrorHandler (class in abipy.flowtk.scheduler_error_handlers) Scissors (class in abipy.electrons.scissors) scissors_spin (abipy.electrons.scissors.ScissorsBuilder property) ScissorsBuilder (class in abipy.electrons.scissors) SCREENING (abipy.abio.enums.RUNL attribute) ScreeningWork (class in abipy.flowtk.gw_works) ScrFile (class in abipy.electrons.scr) ScriptEditor (class in abipy.flowtk.launcher) ScrReader (class in abipy.electrons.scr) second_derivative_bo_energy_v() (abipy.dfpt.vzsisa.Vzsisa method) seek() (abipy.flowtk.abiinspect.YamlTokenizer method) Segment (class in abipy.electrons.effmass_analyzer) select_band_edges() (abipy.electrons.effmass_analyzer.EffMassAnalyzer method) select_cbm() (abipy.electrons.effmass_analyzer.EffMassAnalyzer method) select_files() (abipy.flowtk.tasks.AbinitTask method) select_kinds() (abipy.electrons.ebands.ElectronBands method) select_kpoint_band() (abipy.electrons.effmass_analyzer.EffMassAnalyzer method) select_nids() (in module abipy.scripts.abirun) select_qadapter() (abipy.flowtk.tasks.TaskManager method) select_tasks() (abipy.flowtk.flows.Flow method) select_vbm() (abipy.electrons.effmass_analyzer.EffMassAnalyzer method) select_with_condition() (abipy.flowtk.tasks.ParalHints method) send_signal() (abipy.flowtk.nodes.Node method) Serializable (class in abipy.tools.serialization) serve() (abipy.panels.flows.FlowMultiPageApp method) serve_kwargs_from_options() (in module abipy.scripts.abicomp) (in module abipy.scripts.abiopen) (in module abipy.scripts.abirun) (in module abipy.scripts.abistruct) set_2nd_ord_data() (abipy.dfpt.ddb.DdbFile method) set_abi_spacegroup() (abipy.core.structure.Structure method) set_abinit_template() (in module abipy.panels.core) set_abipy_meta_json() (abipy.flowtk.nodes.Node method) set_autokmesh() (abipy.abio.inputs.AbinitInput method) set_autoqmesh() (abipy.abio.inputs.AnaddbInput method) set_autospinat() (abipy.abio.inputs.AbinitInput method) set_axlims() (in module abipy.tools.plotting) set_basis_functions_from_abinit_pseudos() (abipy.electrons.lobster.LobsterInput method) set_basis_functions_from_potcar() (abipy.electrons.lobster.LobsterInput method) set_color_symbol() (abipy.dynamics.analyzer.MdAnalyzer method) set_comment() (abipy.abio.inputs.AbinitInput method) set_cutoffs_for_accuracy() (abipy.abio.inputs.AbinitInput method) set_default() (in module abipy.scripts.abiml) set_energies() (abipy.eph.cumulant.CumulantQpTempState method) set_eos() (abipy.dfpt.qha.AbstractQHA method) (abipy.dfpt.qha.AbstractQmeshAnalyzer method) (abipy.dfpt.vzsisa.Vzsisa method) set_fermie() (abipy.electrons.ebands.ElectronBands method) set_fermie_from_edos() (abipy.electrons.ebands.ElectronBands method) set_fermie_to_vbm (abipy.panels.core.PanelWithElectronBands attribute) set_fermie_to_vbm() (abipy.electrons.ebands.ElectronBands method) set_flow() (abipy.flowtk.works.Work method) set_gamma_sampling() (abipy.abio.inputs.AbinitInput method) set_garbage_collector() (abipy.flowtk.flows.Flow method) set_gc() (abipy.flowtk.nodes.Node method) set_kmesh() (abipy.abio.inputs.AbinitInput method) set_kmesh_nband_and_occ() (abipy.abio.inputs.AbinitInput method) set_kpath() (abipy.abio.inputs.AbinitInput method) (abipy.wannier90.win.Wannier90Input method) set_kptgw() (abipy.abio.inputs.AbinitInput method) set_loglevel() (in module abipy.tools.cli_parsers) set_manager() (abipy.flowtk.works.Work method) set_max_nprocs() (in module abipy.tools.parallel) set_mem_per_proc() (abipy.flowtk.tasks.TaskManager method) set_mnemonics() (abipy.abio.inputs.AbinitInput method) set_mpi_procs() (abipy.flowtk.tasks.TaskManager method) set_name() (abipy.core.kpoints.Kpoint method) (abipy.flowtk.nodes.Node method) set_node_id() (abipy.flowtk.nodes.Node method) set_omp_threads() (abipy.flowtk.tasks.TaskManager method) set_oncv_input_string() (abipy.panels.oncvpsp_gui.OncvGui method) set_pconfs() (abipy.flowtk.tasks.AbinitTask method) set_phdos_qmesh() (abipy.abio.inputs.AbinitInput method) set_phonopy_obj_from_ananc() (abipy.dfpt.phonons.PhononBands method) set_pyfile() (abipy.flowtk.flows.Flow method) set_qpath() (abipy.abio.inputs.AbinitInput method) (abipy.abio.inputs.AnaddbInput method) set_readme() (abipy.flowtk.nodes.Node method) set_scf_nband() (abipy.abio.inputs.AbinitInput method) set_scf_nband_semicond() (abipy.abio.inputs.AbinitInput method) set_spectator_mode() (abipy.flowtk.flows.Flow method) set_spell_check() (abipy.abio.inputs.AbinitInput method) (abipy.abio.inputs.AnaddbInput method) (abipy.abio.inputs.AtdepInput method) (abipy.wannier90.win.Wannier90Input method) set_spin_mode() (abipy.abio.inputs.AbinitInput method) set_spinat_from_symbols() (abipy.abio.inputs.AbinitInput method) set_status() (abipy.flowtk.flows.Flow method) set_status_exitcode_signal() (abipy.flowtk.qjobs.QueueJob method) set_structure() (abipy.abio.inputs.AbinitInput method) set_style() (abipy.dynamics.analyzer.ArrheniusPlotter method) set_temp_colormap() (abipy.dynamics.analyzer.MultiMdAnalyzer method) set_usepawu() (abipy.abio.inputs.AbinitInput method) set_user_config_taskmanager() (in module abipy.flowtk.tasks) set_user_message() (abipy.flowtk.nodes.Node method) set_vars() (abipy.abio.inputs.AbstractInput method) (abipy.flowtk.tasks.OpticTask method) set_vars_ifnotin() (abipy.abio.inputs.AbstractInput method) set_weight() (abipy.core.kpoints.Kpoint method) set_workdir() (abipy.flowtk.flows.Flow method) (abipy.flowtk.tasks.OpticTask method) (abipy.flowtk.works.Work method) setup() (abipy.flowtk.tasks.AbinitTask method) (abipy.flowtk.tasks.AnaddbTask method) (abipy.flowtk.tasks.AtdepTask method) (abipy.flowtk.tasks.GwrTask method) (abipy.flowtk.tasks.NscfTask method) (abipy.flowtk.tasks.OpticTask method) (abipy.flowtk.works.Work method) sfind_ind_val() (in module abipy.dynamics.analyzer) SgeJob (class in abipy.flowtk.qjobs) shape (abipy.dfpt.phonons.PhononBands property) (abipy.electrons.ebands.ElectronBands property) shear() (abipy.tools.elate.elastic.Elastic method) (abipy.tools.elate.elastic.ElasticOrtho method) shear2D() (abipy.tools.elate.elastic.Elastic method) shear3D() (abipy.tools.elate.elastic.Elastic method) SHEAR3D() (in module abipy.tools.elate.elastic) shebang() (abipy.flowtk.launcher.ScriptEditor method) shell (abipy.flowtk.launcher.ScriptEditor property) ShellJob (class in abipy.flowtk.qjobs) ShellScript (class in abipy.tools.iotools) show_abierrors() (abipy.flowtk.flows.Flow method) show_autoparal() (abipy.flowtk.flows.Flow method) show_bz() (abipy.core.mixins.Has_Structure method) show_corrections() (abipy.flowtk.flows.Flow method) show_dependencies() (abipy.flowtk.flows.Flow method) show_event_handlers() (abipy.flowtk.nodes.Node method) show_events() (abipy.flowtk.flows.Flow method) show_exception() (in module abipy.panels.core) show_files() (abipy.abio.robots.Robot method) show_history() (abipy.flowtk.flows.Flow method) show_info() (abipy.flowtk.flows.Flow method) show_inputs() (abipy.flowtk.flows.Flow method) show_managers() (in module abipy.scripts.abicheck) show_qouts() (abipy.flowtk.flows.Flow method) show_receivers() (abipy.flowtk.flows.Flow method) show_status() (abipy.flowtk.flows.Flow method) show_summary() (abipy.flowtk.flows.Flow method) show_tricky_tasks() (abipy.flowtk.flows.Flow method) shutdown() (abipy.flowtk.launcher.PyFlowScheduler method) SigEPhFile (class in abipy.eph.sigeph) SigEPhFilePanel (class in abipy.panels.sigeph) SigEPhRobot (class in abipy.eph.sigeph) sigkpt2index() (abipy.eph.sigeph.SigEPhFile method) (abipy.eph.sigeph.SigmaPhReader method) SIGMA (abipy.abio.enums.RUNL attribute) sigma_berend (abipy.dynamics.analyzer.DiffusionData attribute) sigma_berend() (in module abipy.dynamics.analyzer) sigma_kpoints (abipy.electrons.gw.SigresFile property) (abipy.electrons.gwr.GwrFile property) (abipy.eph.sigeph.SigEPhFile property) SigmaBerend (class in abipy.dynamics.analyzer) SigmaConvWork (class in abipy.flowtk.works) SigmaPade (class in abipy.tools.pade) SigmaPhReader (class in abipy.eph.sigeph) sigmas1 (abipy.dynamics.analyzer.SigmaBerend attribute) sigmas2 (abipy.dynamics.analyzer.SigmaBerend attribute) SigmaTask (class in abipy.flowtk.tasks) sign_sqrtekb (abipy.electrons.psps.VnlProjector property) sigres_path (abipy.flowtk.tasks.SigmaTask property) SigresFile (class in abipy.electrons.gw) SigresRobot (class in abipy.electrons.gw) silence_tensorflow() (in module abipy.ml.aseml) single_shot() (abipy.flowtk.flows.Flow method) (abipy.flowtk.launcher.PyLauncher method) site_pairs_partial (abipy.electrons.lobster.CoxpFile property) site_pairs_total (abipy.electrons.lobster.CoxpFile property) site_symmetries (abipy.core.structure.Structure property) SiteSymmetries (class in abipy.core.site_symmetries)

size_slider() (in module abipy.display.utils) skb (abipy.electrons.gw.QPState property) (abipy.eph.sigeph.QpTempState property) skb_iter() (abipy.electrons.ebands.ElectronBands method) skw_ebands_kpath (abipy.panels.core.PanelWithElectronBands attribute) skw_ebands_kpath_fileinput (abipy.panels.core.PanelWithElectronBands attribute) skw_line_density (abipy.panels.core.PanelWithElectronBands attribute) skw_lpratio (abipy.panels.core.PanelWithElectronBands attribute) SkwInterpolator (class in abipy.core.skw) SkwPanelWithFileInput (class in abipy.panels.electrons) SlaveProcessMemoryCancelError (class in abipy.flowtk.scheduler_error_parsers) slideshow() (abipy.flowtk.abiinspect.CyclesPlotter method) (abipy.flowtk.abiinspect.Relaxation method) SlotPickleMixin (class in abipy.core.mixins) slurm_get_jobs() (in module abipy.flowtk.qutils) slurm_parse_timestr() (in module abipy.flowtk.qutils) slurm_sbatch() (in module abipy.flowtk.qutils) slurm_write_and_sbatch() (in module abipy.flowtk.qutils) SlurmErrorParser (class in abipy.flowtk.scheduler_error_parsers) SlurmJob (class in abipy.flowtk.qjobs) SlurmJobArray (class in abipy.flowtk.qutils) SmearingDecorator (class in abipy.abio.decorators) smooth() (in module abipy.tools.numtools) software_stack() (in module abipy.abilab) sort_and_groupby() (in module abipy.tools.numtools) sort_by_e0() (abipy.eph.sigeph.QpTempList method) sort_by_efficiency() (abipy.flowtk.tasks.ParalHints method) sort_by_mem_per_proc() (abipy.flowtk.tasks.ParalHints method) sort_by_speedup() (abipy.flowtk.tasks.ParalHints method) sortby() (abipy.abio.robots.Robot method) sortby_label() (abipy.abio.robots.Robot static method) sorted_kpoints (abipy.electrons.scr.ScrReader property) SoundVelocity (class in abipy.dfpt.vsound) spacing() (abipy.electrons.ebands.ElectronBands method) SparseHistogram (class in abipy.flowtk.utils) species_by_znucl (abipy.core.structure.Structure property) SpectatorError (abipy.flowtk.nodes.Node attribute) SpectatorNodeError speed_up() (abipy.flowtk.scheduler_error_parsers.CorrectorProtocolApplication method) spell_check (abipy.abio.inputs.AbinitInput property) (abipy.abio.inputs.AnaddbInput property) (abipy.abio.inputs.AtdepInput property) (abipy.wannier90.win.Wannier90Input property) spget_equivalent_atoms() (abipy.core.structure.Structure method) spget_lattice_type() (abipy.core.structure.Structure method) spget_site_symmetries() (abipy.core.structure.Structure method) spget_summary() (abipy.core.structure.Structure method) spglib_summary() (abipy.panels.structure.StructurePanel method) spgnum_to_crystal_system() (in module abipy.dfpt.qha_general_stress) spgrp_number (abipy.flowtk.zsisa.ZsisaResults attribute) spgset_abi_spacegroup() (abipy.core.structure.Structure method) spin (abipy.eph.gstore.Gqk attribute) (abipy.eph.gwan.Gqk attribute) (abipy.eph.vpq.Polaron attribute) spin2tex (abipy.electrons.fatbands.FatBandsFile attribute) spin_mode (abipy.core.atom.AtomicConfiguration property) SpinDecorator (class in abipy.abio.decorators) spinors2color (abipy.electrons.fatbands.FatBandsFile attribute) spinors2tex (abipy.electrons.fatbands.FatBandsFile attribute) spins (abipy.electrons.ebands.ElectronBands property) spline (abipy.core.atom.RadialFunction property) (abipy.core.func1d.Function1D property) spline_derivatives() (abipy.core.func1d.Function1D method) spline_int_jlqr() (in module abipy.tools.bessel) spline_integral() (abipy.core.func1d.Function1D method) spline_on_mesh() (abipy.core.func1d.Function1D method) spline_roots (abipy.core.func1d.Function1D property) split_datasets() (abipy.abio.inputs.MultiDataset method) split_dwdq (abipy.dfpt.gruneisen.GrunsNcFile property) split_gruns (abipy.dfpt.gruneisen.GrunsNcFile property) split_gruns_finite_differences() (abipy.dfpt.gruneisen.GrunsNcFile method) split_matched_indices (abipy.dfpt.phonons.PhononBands property) split_phdispl_cart (abipy.dfpt.phonons.PhononBands property) split_phfreqs (abipy.dfpt.phonons.PhononBands property) split_qpoints (abipy.dfpt.phonons.PhononBands property) splitall() (in module abipy.abio.abivar_database.variables) sql_connect() (abipy.flowtk.launcher.MultiFlowScheduler method) starmap() (abipy.panels.oncvpsp_gui.OncvGui method) start (abipy.abio.abivar_database.variables.Range attribute) (abipy.abio.robots.Robot attribute) (abipy.ppcodes.oncv_parser.GrepResults attribute) start() (abipy.flowtk.launcher.MultiFlowScheduler method) (abipy.flowtk.launcher.PyFlowScheduler method) (abipy.flowtk.mocks.AbinitTaskMockedStart method) (abipy.flowtk.works.Work method) statdiff() (abipy.electrons.ebands.ElectronBands method) status (abipy.flowtk.flows.Flow property) (abipy.flowtk.nodes.Dependency property) (abipy.flowtk.nodes.FileNode property) (abipy.flowtk.nodes.Node property) (abipy.flowtk.works.Work property) Status (class in abipy.flowtk.nodes) (class in abipy.ppcodes.ppgen) status_counter (abipy.flowtk.flows.Flow property) (abipy.flowtk.works.Work property) StatusCards (class in abipy.panels.nodes) stdin_fname (abipy.flowtk.wrappers.Abitk attribute) step (abipy.flowtk.finitediff.Perturbation property) steps (abipy.dynamics.hist.HistFile property) Stoke_shift() (abipy.lumi.deltaSCF.DeltaSCF method) stop (abipy.abio.abivar_database.variables.Range attribute) (abipy.ppcodes.oncv_parser.GrepResults attribute) str2bool_or_none() (in module abipy.display.utils) str_deps() (abipy.flowtk.nodes.Node method) straceback() (in module abipy.flowtk.abiinspect) (in module abipy.scripts.abirun) STRAIN (abipy.flowtk.finitediff.PertKind attribute) strain (abipy.flowtk.finitediff.Perturbation attribute) StrainData (class in abipy.flowtk.finitediff) StrEnum (class in abipy.abio.enums) stress (abipy.ml.aseml.AseResults attribute) Stress (class in abipy.tools.tensors) stress_au (abipy.dfpt.qha_general_stress.ThermalData attribute) stress_v_ZSISA() (abipy.dfpt.qha_general_stress.QHA_ZSISA method) stress_ZSISA_1DOF() (abipy.dfpt.qha_general_stress.QHA_ZSISA method) stress_ZSISA_2DOF() (abipy.dfpt.qha_general_stress.QHA_ZSISA method) stress_ZSISA_3DOF() (abipy.dfpt.qha_general_stress.QHA_ZSISA method) stress_ZSISA_monoclinic() (abipy.dfpt.qha_general_stress.QHA_ZSISA method) stress_ZSISA_slab_1DOF() (abipy.dfpt.qha_general_stress.QHA_ZSISA method) stress_ZSISA_slab_2DOF() (abipy.dfpt.qha_general_stress.QHA_ZSISA method) stress_ZSISA_slab_3DOF() (abipy.dfpt.qha_general_stress.QHA_ZSISA method) stress_ZSISA_triclinic() (abipy.dfpt.qha_general_stress.QHA_ZSISA method) stru_0_1_to_minus_05_05() (in module abipy.embedding.utils_ifc) structure (abipy.abio.abivars.AbinitInputFile property) (abipy.abio.inputs.AbinitInput property) (abipy.abio.inputs.AnaddbInput property) (abipy.abio.inputs.AtdepInput property) (abipy.core.mixins.Has_Structure property) (abipy.core.site_symmetries.SiteSymmetries property) (abipy.dfpt.anaddbnc.AnaddbNcFile attribute) (abipy.dfpt.anaddbnc.AnaddbNcFile property) (abipy.dfpt.ddb.DdbFile property) (abipy.dfpt.ddb.DielectricTensorGenerator property) (abipy.dfpt.ddb.DynQuad property) (abipy.dfpt.ddb.Zeffs property) (abipy.dfpt.elastic.ElasticData property) (abipy.dfpt.gruneisen.GrunsNcFile property) (abipy.dfpt.ifc.InteratomicForceConstants property) (abipy.dfpt.msqdos.MsqDos property) (abipy.dfpt.phonons.PhbstFile property) (abipy.dfpt.phonons.PhdosFile property) (abipy.dfpt.phonons.PhdosReader property) (abipy.dfpt.phtk.NonAnalyticalPh property) (abipy.dfpt.vsound.SoundVelocity property) (abipy.electrons.abitk.KmeshFile property) (abipy.electrons.arpes.ArpesPlotter property) (abipy.electrons.bse.MdfFile property) (abipy.electrons.bse.MdfReader property) (abipy.electrons.ebands.ElectronBands property) (abipy.electrons.effmass_analyzer.EffMassAnalyzer property) (abipy.electrons.eskw.EskwFile property) (abipy.electrons.fatbands.FatBandsFile property) (abipy.electrons.fold2bloch.Fold2BlochNcfile property) (abipy.electrons.gsr.GsrFile property) (abipy.electrons.gw.SigresFile property) (abipy.electrons.gwr.GwrFile property) (abipy.electrons.optic.OpticNcFile property) (abipy.electrons.orbmag.OrbmagAnalyzer property) (abipy.electrons.orbmag.OrbmagFile property) (abipy.electrons.scr.ScrFile property) (abipy.electrons.tchim.TchimFile property) (abipy.eph.a2f.A2fFile property) (abipy.eph.gkq.GkqFile property) (abipy.eph.gpath.GpathFile property) (abipy.eph.gstore.Gqk property) (abipy.eph.gstore.GstoreFile property) (abipy.eph.gwan.Gqk property) (abipy.eph.gwan.GwanFile property) (abipy.eph.rta.RtaFile property) (abipy.eph.sigeph.SigEPhFile property) (abipy.eph.transportfile.TransportFile property) (abipy.eph.v1qavg.V1qAvgFile property) (abipy.eph.v1qnu.V1qnuFile property) (abipy.eph.v1sym.V1symFile property) (abipy.eph.vpq.Polaron property) (abipy.eph.vpq.VpqFile property) (abipy.eph.wr.WrNcFile property) (abipy.ml.relax_scanner.Entry attribute) (abipy.wannier90.abiwan.AbiwanFile property) (abipy.wannier90.win.Wannier90Input property) (abipy.wannier90.wout.WoutFile property) (abipy.waves.wfkfile.WfkFile property) Structure (class in abipy.core.structure) structure2wannier90() (in module abipy.wannier90.win) structure_abivars (abipy.abio.inputs.AbinitInput property) structure_dataframes (abipy.core.restapi.DatabaseStructures property) structure_ex() (abipy.lumi.deltaSCF.DeltaSCF method) structure_from_abistruct_fmt() (in module abipy.abio.abivars) structure_from_atoms() (in module abipy.flowtk.abiphonopy) structure_gs() (abipy.lumi.deltaSCF.DeltaSCF method) structure_viewer (abipy.panels.core.PanelWithStructure attribute) StructurePanel (class in abipy.panels.structure) structures (abipy.dfpt.ddb.PhqData attribute) (abipy.dfpt.gruneisen.GrunsNcFile property) (abipy.dynamics.hist.HistFile property) (abipy.tools.tensors.DielectricDataList property) subclass_from_name() (abipy.core.kpoints.KpointList class method) submit_tasks() (abipy.flowtk.works.Work method) SubmitError (class in abipy.flowtk.scheduler_error_parsers) sum_weights() (abipy.core.kpoints.KpointList method) summarize() (abipy.electrons.effmass_analyzer.EffMassAnalyzer method) (abipy.ml.aseml.AseRelaxation method) sumrule (abipy.dfpt.ddb.Zeffs property) support_ext() (abipy.iotools.visualizer.Visualizer class method) supported_extensions() (abipy.iotools.visualizer.Visualizer class method) SUPPORTED_EXTS (abipy.ml.extxyz_generator.ExtxyzIOWriter attribute) SusFile (class in abipy.electrons.scr) symafm (abipy.core.symmetries.AbinitSpaceGroup property) symbol (abipy.core.atom.AtomicConfiguration property) (abipy.dynamics.analyzer.ArrheniusEntry attribute) (abipy.dynamics.analyzer.DiffusionData attribute) (abipy.dynamics.analyzer.Msdtt0 attribute) symbols() (abipy.dynamics.analyzer.ArrheniusPlotter method) symbols_by_typat (abipy.flowtk.abiobjects.LdauParams property) (abipy.flowtk.abiobjects.LexxParams property) symeq() (abipy.core.symmetries.AbinitSpaceGroup method) symlink_abiext() (abipy.flowtk.utils.Directory method) symmops() (abipy.core.symmetries.AbinitSpaceGroup method) symprec (abipy.core.skw.ElectronInterpolator attribute) symrec (abipy.core.symmetries.AbinitSpaceGroup property) symrel (abipy.core.symmetries.AbinitSpaceGroup property) sync_widgets() (abipy.panels.flows.WorkTaskSelector method)

T

table_names (abipy.flowtk.psrepos.PseudosRepo property) tabulate_repos() (in module abipy.flowtk.psrepos) tag (abipy.flowtk.abiinspect.YamlDoc attribute) target_atom (abipy.electrons.orbmag.OrbmagFile property) target_atom_nucdipmom (abipy.electrons.orbmag.OrbmagFile property) task (abipy.panels.flows.WorkTaskSelector attribute) TaskManager (class in abipy.flowtk.tasks) TaskPanel (class in abipy.panels.tasks) tasks_from_nids() (abipy.flowtk.flows.Flow method) TchimFile (class in abipy.electrons.tchim) TchimVsSus (class in abipy.electrons.tchim) tdep_to_abinit() (in module abipy.dfpt.converters) TdepElectronBands (class in abipy.eph.sigeph) temp_shell_task() (abipy.flowtk.tasks.AbinitTask class method) (abipy.flowtk.tasks.AnaddbTask class method) temperature (abipy.dfpt.qha_general_stress.ThermalData attribute) (abipy.dynamics.analyzer.DiffusionData attribute) (abipy.dynamics.analyzer.MdAnalyzer property) (abipy.dynamics.analyzer.Msdtt0 property) (abipy.dynamics.analyzer.SigmaBerend attribute) (abipy.flowtk.zsisa.ThermalRelaxEntry attribute) temporary_change_attributes() (in module abipy.tools.context_managers) temporary_flow() (abipy.flowtk.flows.Flow class method) temps (abipy.dynamics.analyzer.ArrheniusEntry attribute) tensor_at_frequency() (abipy.dfpt.ddb.DielectricTensorGenerator method) TENSOR_META (abipy.dfpt.elastic.ElasticData attribute) tests_with_fftalg() (abipy.tools.fftprof.FFTBenchmark method) tex (abipy.flowtk.finitediff.Perturbation property) text (abipy.flowtk.abiinspect.YamlDoc attribute) text_notag (abipy.flowtk.abiinspect.YamlDoc property) therm (abipy.dfpt.qha_general_stress.ThermalData attribute) (abipy.flowtk.zsisa.ThermalRelaxEntry attribute) thermal_conductivity_slack() (abipy.dfpt.gruneisen.GrunsNcFile method) (in module abipy.dfpt.gruneisen) thermal_relax_entries (abipy.flowtk.zsisa.ZsisaResults attribute) ThermalData (class in abipy.dfpt.qha_general_stress) ThermalRelaxEntry (class in abipy.flowtk.zsisa) ThermalRelaxTask (class in abipy.flowtk.zsisa) ThermalRelaxWork (class in abipy.flowtk.zsisa) time1 (abipy.dynamics.analyzer.SigmaBerend attribute) time2 (abipy.dynamics.analyzer.SigmaBerend attribute) time2loadlever() (in module abipy.flowtk.qutils) time2pbspro() (in module abipy.flowtk.qutils) time2slurm() (in module abipy.flowtk.qutils) time_key (abipy.dynamics.cpx.EvpFile property) (abipy.ml.aseml.AseMdLog attribute) timeArrScorrelated (abipy.dynamics.analyzer.DiffusionData attribute) TimeCancelError (class in abipy.flowtk.scheduler_error_parsers) timeit() (in module abipy.tools.decorators) timelimit_parser() (in module abipy.flowtk.qutils) timeout (abipy.flowtk.qjobs.QueueJob property) Timeout (class in abipy.tools.context_managers) Timer (class in abipy.tools.context_managers) times (abipy.dynamics.analyzer.DiffusionData attribute) (abipy.dynamics.analyzer.Msdtt0 property) (abipy.dynamics.cpx.EvpFile property) timestep (abipy.dynamics.analyzer.MdAnalyzer property) tips (abipy.electrons.gw.QPState property) TIPS() (abipy.electrons.gw.QPState class method) tmesh (abipy.eph.rta.RtaFile property) (abipy.eph.sigeph.QpTempList property) (abipy.eph.sigeph.SigEPhFile property) tnons (abipy.core.symmetries.AbinitSpaceGroup property) to() (abipy.core.structure.Structure method) to_abimarkdown() (abipy.abio.abivar_database.variables.Variable method) to_abivars() (abipy.core.structure.Structure method) (abipy.flowtk.abiobjects.LdauParams method) (abipy.flowtk.abiobjects.LexxParams method) to_array() (abipy.core.kpoints.KpointList method) to_ase_atoms() (abipy.core.structure.Structure method) to_bxsf() (abipy.electrons.ebands.ElectronBands method) to_chgcar() (abipy.core.fields.Density method) to_dataframe() (abipy.dfpt.gruneisen.GrunsNcFile method) to_ddb() (abipy.embedding.embedding_ifc.Embedded_phonons method) to_dict (abipy.core.atom.RadialFunction property) to_dict() (abipy.flowtk.flows.Flow method) to_file() (abipy.core.func1d.Function1D method) to_json() (abipy.abio.robots.Robot method) (abipy.core.kpoints.KpointList method) (abipy.electrons.ebands.ElectronBands method) to_pymatgen() (abipy.dfpt.phonons.PhdosFile method) (abipy.dfpt.phonons.PhononBands method) (abipy.dfpt.phonons.PhononDos method) (abipy.electrons.ebands.ElectronBands method) (abipy.electrons.ebands.ElectronDos method) to_rowdict() (abipy.flowtk.psrepos.PseudosRepo method) to_shell_manager() (abipy.flowtk.tasks.TaskManager method) to_strdict() (abipy.electrons.gw.QPState method) to_string() (abipy.abio.abivar_database.variables.Variable method) (abipy.abio.abivars.AbinitInputFile method) (abipy.abio.inputs.AbinitInput method) (abipy.abio.inputs.AbstractInput method) (abipy.abio.inputs.AnaddbInput method) (abipy.abio.inputs.AtdepInput method) (abipy.abio.inputs.Cut3DInput method) (abipy.abio.inputs.MultiDataset method) (abipy.abio.inputs.OpticInput method) (abipy.abio.outputs.AbinitLogFile method) (abipy.abio.outputs.AbinitOutputFile method) (abipy.abio.robots.Robot method) (abipy.core.gsphere.GSphere method) (abipy.core.kpoints.IrredZone method) (abipy.core.kpoints.Kpath method) (abipy.core.kpoints.Kpoint method) (abipy.core.kpoints.KpointList method) (abipy.core.kpoints.Ktables method) (abipy.core.mesh3d.Mesh3D method) (abipy.core.site_symmetries.SiteSymmetries method) (abipy.core.skw.SkwInterpolator method) (abipy.core.structure.Structure method) (abipy.core.symmetries.AbinitSpaceGroup method) (abipy.dfpt.anaddbnc.AnaddbNcFile method) (abipy.dfpt.ddb.DdbFile method) (abipy.dfpt.ddb.DielectricTensorGenerator method) (abipy.dfpt.ddb.Zeffs method) (abipy.dfpt.elastic.ElasticData method) (abipy.dfpt.gruneisen.GrunsNcFile method) (abipy.dfpt.ifc.InteratomicForceConstants method) (abipy.dfpt.msqdos.MsqDos method) (abipy.dfpt.phonons.PhbstFile method) (abipy.dfpt.phonons.PhdosFile method) (abipy.dfpt.phonons.PhononBands method) (abipy.dfpt.phonons.PhononBandsPlotter method) (abipy.dfpt.qha_general_stress.QHA_ZSISA method) (abipy.dfpt.qha_general_stress.ThermalData method) (abipy.dfpt.vzsisa.Vzsisa method) (abipy.dynamics.analyzer.MdAnalyzer method) (abipy.dynamics.analyzer.Msdtt0 method) (abipy.dynamics.analyzer.Msdtt0List method) (abipy.dynamics.analyzer.MultiMdAnalyzer method) (abipy.dynamics.cpx.EvpFile method) (abipy.dynamics.hist.HistFile method) (abipy.dynamics.hist.HistRobot method) (abipy.electrons.abitk.KmeshFile method) (abipy.electrons.arpes.ArpesPlotter method) (abipy.electrons.bse.DielectricFunction method) (abipy.electrons.bse.MdfFile method) (abipy.electrons.bse.MultipleMdfPlotter method) (abipy.electrons.denpot.DensityNcFile method) (abipy.electrons.ebands.ElectronBands method) (abipy.electrons.ebands.ElectronBandsPlotter method) (abipy.electrons.ebands.ElectronDos method) (abipy.electrons.effmass_analyzer.EffMassAnalyzer method) (abipy.electrons.effmass_analyzer.Segment method) (abipy.electrons.eskw.EskwFile method) (abipy.electrons.fatbands.FatBandsFile method) (abipy.electrons.fold2bloch.Fold2BlochNcfile method) (abipy.electrons.gsr.GsrFile method) (abipy.electrons.gw.SigresFile method) (abipy.electrons.gwr.GwrFile method) (abipy.electrons.lobster.CoxpFile method) (abipy.electrons.lobster.ICoxpFile method) (abipy.electrons.lobster.LobsterAnalyzer method) (abipy.electrons.lobster.LobsterDoscarFile method) (abipy.electrons.lobster.LobsterInput method) (abipy.electrons.optic.OpticNcFile method) (abipy.electrons.orbmag.OrbmagAnalyzer method) (abipy.electrons.orbmag.OrbmagFile method) (abipy.electrons.psps.PspsFile method) (abipy.electrons.psps.VnlProjector method) (abipy.electrons.scr.ScrFile method) (abipy.electrons.tchim.TchimFile method) (abipy.eph.a2f.A2f method) (abipy.eph.a2f.A2fFile method) (abipy.eph.cumulant.CumulantEPhFile method) (abipy.eph.gkq.GkqFile method) (abipy.eph.gpath.GpathFile method) (abipy.eph.gstore.Gqk method) (abipy.eph.gstore.GstoreFile method) (abipy.eph.gwan.Gqk method) (abipy.eph.gwan.GwanFile method) (abipy.eph.rta.RtaFile method) (abipy.eph.sigeph.EphSelfEnergy method) (abipy.eph.sigeph.QpTempList method) (abipy.eph.sigeph.QpTempState method) (abipy.eph.sigeph.SigEPhFile method) (abipy.eph.sigeph.TdepElectronBands method) (abipy.eph.transportfile.TransportFile method) (abipy.eph.v1qavg.V1qAvgFile method) (abipy.eph.v1qnu.V1qnuFile method) (abipy.eph.v1sym.V1symFile method) (abipy.eph.vpq.Polaron method) (abipy.eph.vpq.VpqFile method) (abipy.eph.vpq.VpqRobot method) (abipy.eph.wr.WrNcFile method) (abipy.flowtk.abiinspect.Relaxation method) (abipy.flowtk.abiinspect.ScfCycle method) (abipy.flowtk.finitediff.DisplData method) (abipy.flowtk.finitediff.ElectricFieldData method) (abipy.flowtk.finitediff.StrainData method) (abipy.flowtk.finitediff.ZeemanData method) (abipy.flowtk.nodes.NodeHistory method) (abipy.ml.aseml.AseMdLog method) (abipy.ml.aseml.AseRelaxation method) (abipy.ml.aseml.AseResults method) (abipy.ml.aseml.AseTrajectoryPlotter method) (abipy.ml.aseml.FrozenPhononMl method) (abipy.ml.aseml.MlCompareNNs method) (abipy.ml.aseml.MlCwfEos method) (abipy.ml.aseml.MlEos method) (abipy.ml.aseml.MlGsList method) (abipy.ml.aseml.MlMd method) (abipy.ml.aseml.MlNeb method) (abipy.ml.aseml.MlOrderer method) (abipy.ml.aseml.MlRelaxer method) (abipy.ml.aseml.MlRelaxerFromMdTraj method) (abipy.ml.aseml.MlValidateWithAbinitio method) (abipy.ml.aseml.MultiMlNeb method) (abipy.ml.extxyz_generator.ExtxyzIOWriter method) (abipy.ml.ml_phonopy.MlPhonopy method) (abipy.ml.ml_phonopy.MlPhonopyWithDDB method) (abipy.ml.ml_phonopy.MlVZSISAQHAPhonopy method) (abipy.ml.relax_scanner.RelaxScanner method) (abipy.ml.relax_scanner.RelaxScannerAnalyzer method) (abipy.ppcodes.oncv_parser.OncvParser method) (abipy.tools.plotting.GenericDataFilePlotter method) (abipy.tools.plotting.GenericDataFilesPlotter method) (abipy.wannier90.abiwan.AbiwanFile method) (abipy.wannier90.win.Wannier90Input method) (abipy.wannier90.wout.WoutFile method) (abipy.waves.wfkfile.WfkFile method)

to_xdatcar() (abipy.dynamics.hist.HistFile method) to_xmgrace() (abipy.dfpt.phonons.PhononBands method) (abipy.electrons.ebands.ElectronBands method) tofftmesh() (abipy.core.gsphere.GSphere method) tonumber() (in module abipy.tools.text) topic2relevances (abipy.abio.abivar_database.variables.Variable property) torange() (in module abipy.tools.duck) TorqueJob (class in abipy.flowtk.qjobs) tos() (abipy.core.kpoints.Kpoint method) tot (abipy.dfpt.raman.PowderIntensity attribute) total (abipy.abio.outputs.BerryPhasePolarization attribute) (abipy.electrons.lobster.CoxpFile attribute) total_dos (abipy.electrons.lobster.LobsterDoscarFile attribute) total_energy (abipy.dfpt.ddb.DdbFile property) total_rhog (abipy.core.fields.Density property) total_rhor (abipy.core.fields.Density property) total_rhor_as_density() (abipy.core.fields.Density method) trace (abipy.core.symmetries.LatticeRotation property) traj (abipy.ml.aseml.AseRelaxation property) traj_forces_for_keys() (abipy.ml.aseml.AseResultsComparator method) traj_to_qepos() (in module abipy.dynamics.cpx) TransportFile (class in abipy.eph.transportfile) transpose_last3dims() (in module abipy.tools.numtools) trim_paths() (abipy.abio.robots.Robot method) try_files() (in module abipy.tools.iotools) tsmear (abipy.core.mixins.Has_ElectronBands property) TYPE2NAMES (abipy.dfpt.elastic.ElasticData attribute) type_of_index (abipy.electrons.lobster.CoxpFile attribute) (abipy.electrons.lobster.ICoxpFile attribute) typeidx_from_symbol() (abipy.iotools.ETSF_Reader method)

U

uf_eigens (abipy.electrons.fold2bloch.Fold2BlochNcfile property) uf_weights (abipy.electrons.fold2bloch.Fold2BlochNcfile property) unconverged_tasks (abipy.flowtk.flows.Flow property) unfold() (abipy.flowtk.wrappers.Fold2Bloch method) units (abipy.abio.variable.InputVariable property) (abipy.dfpt.ddb.PhqData attribute) (abipy.panels.ddb.PanelWithAnaddbParams attribute) unknown_status (abipy.flowtk.qjobs.QueueJob property) up_minus_down (abipy.electrons.ebands.ElectronDos property) update_card() (abipy.panels.nodes.StatusCards method) update_collection() (abipy.flowtk.nodes.NodeResults method) update_flows_and_slqdb() (abipy.flowtk.launcher.MultiFlowScheduler method) update_json_endpoints() (abipy.abio.abivar_database.variables.VarDatabase method) update_main() (abipy.panels.electrons.CompareEbandsWithMP method) update_main_area() (abipy.panels.electrons.SkwPanelWithFileInput method) (abipy.panels.structure.InputFileGenerator method)

update_work() (abipy.panels.flows.WorkTaskSelector method) update_zsisa_results() (abipy.flowtk.zsisa.ThermalRelaxWork method) url (abipy.abio.inputs.OpticVar property) use_cache (abipy.core.skw.ElectronInterpolator attribute) use_einfvib2 (abipy.dfpt.qha_2D.QHA_2D property) use_qha (abipy.dfpt.qha_2D.QHA_2D property) use_smartio() (abipy.flowtk.flows.Flow method) USER_CONFIG_DIR (abipy.flowtk.tasks.TaskManager attribute) user_message (abipy.flowtk.nodes.Node property) user_wants_to_abort() (in module abipy.tools.cli_parsers) user_wants_to_exit() (abipy.flowtk.utils.Editor static method) uses_interpolated_dvdb (abipy.eph.gkq.GkqFile property) uses_ktimereversal (abipy.abio.inputs.AbinitInput property) uses_paral_kgb() (abipy.flowtk.tasks.AbinitTask method) utype (abipy.eph.vpq.Entry attribute)

V

V1qAvgFile (class in abipy.eph.v1qavg) V1qAvgRobot (class in abipy.eph.v1qavg) V1qnuFile (class in abipy.eph.v1qnu) V1symFile (class in abipy.eph.v1sym) v_zsisa (abipy.dfpt.qha_general_stress.QhaModel attribute) val_ib (abipy.core.skw.ElectronInterpolator property) valence_electrons_per_atom (abipy.abio.inputs.AbinitInput property) valence_electrons_per_atom() (abipy.core.structure.Structure method) validate() (abipy.abio.abivar_database.variables.Variable method) (abipy.abio.enums.EnumMixin class method) validate_checksums() (abipy.flowtk.psrepos.JthRepo method) (abipy.flowtk.psrepos.OncvpspRepo method) (abipy.flowtk.psrepos.PseudosRepo method) validate_json_schema() (abipy.flowtk.flows.Flow method) validate_output_parser() (in module abipy.abio.outputs) values (abipy.core.func1d.Function1D property) (abipy.electrons.lobster.ICoxpFile attribute) (abipy.flowtk.finitediff.Perturbation attribute) (abipy.ppcodes.oncv_parser.AtanLogDer attribute) (abipy.ppcodes.oncv_parser.ConvData attribute) ValueWithConditions (class in abipy.abio.abivar_database.variables) ValueWithUnit (class in abipy.abio.abivar_database.variables) VarDatabase (class in abipy.abio.abivar_database.variables) Variable (class in abipy.abio.abivar_database.variables) variable_checksum() (abipy.abio.inputs.AbinitInput method) varname_dtindex() (abipy.abio.abivars.AbinitInputParser static method) varpeq (abipy.eph.vpq.Polaron attribute) vars (abipy.abio.inputs.AbinitInput property) (abipy.abio.inputs.AbstractInput property) (abipy.abio.inputs.AnaddbInput property) (abipy.abio.inputs.AtdepInput property) (abipy.abio.inputs.OpticInput property) (abipy.wannier90.win.Wannier90Input property) vars_with_char() (abipy.abio.abivar_database.variables.InputVariables method) vars_with_varset() (abipy.abio.abivar_database.variables.InputVariables method) vasp_dict_set_cls() (in module abipy.scripts.abinp) vec2str() (in module abipy.flowtk.finitediff) verbose (abipy.abio.abivars.AbinitInputParser attribute) (abipy.dynamics.analyzer.MdAnalyzer property) (abipy.panels.core.AbipyParameterized attribute) version (abipy.dfpt.ddb.DdbFile property) VERSION (abipy.flowtk.flows.Flow attribute) version (abipy.flowtk.tasks.AbinitBuild attribute) version_ge() (abipy.flowtk.tasks.AbinitBuild method) versor() (abipy.core.kpoints.Kpoint method) versors (abipy.core.kpoints.Kpath property) vesta_open() (abipy.dfpt.msqdos.MsqDos method) vesta_phonon() (in module abipy.embedding.utils_ifc)

vh (abipy.electrons.denpot.VhartreeNcFile property) VhartreeNcFile (class in abipy.electrons.denpot) VhartreePotential (class in abipy.core.fields) vhxc (abipy.electrons.denpot.VhxcNcFile property) VhxcNcFile (class in abipy.electrons.denpot) VhxcPotential (class in abipy.core.fields) view_phononwebsite() (abipy.dfpt.ddb.DdbFile method) (abipy.dfpt.phonons.PhononBands method) visualize() (abipy.core.structure.Structure method) (abipy.dynamics.hist.HistFile method) visualize_nu() (abipy.eph.v1qnu.V1qnuFile method) visualize_structure_with() (abipy.core.mixins.Has_Structure method) visualize_ur2() (abipy.waves.pwwave.PWWaveFunction method) (abipy.waves.wfkfile.WfkFile method) Visualizer (class in abipy.iotools.visualizer) vk_cart_ibz (abipy.eph.gstore.Gqk attribute) (abipy.eph.gwan.Gqk attribute) vkmat_cart_ibz (abipy.eph.gstore.Gqk attribute) (abipy.eph.gwan.Gqk attribute) vks (abipy.electrons.denpot.PotNcFile property) VksPotential (class in abipy.core.fields) VnlProjector (class in abipy.electrons.psps) voigt_ind (abipy.flowtk.finitediff.Perturbation attribute) voigt_to_mat33() (in module abipy.flowtk.finitediff) vol_E2Vib1() (abipy.dfpt.vzsisa.Vzsisa method) vol_E2Vib1_forth() (abipy.dfpt.vzsisa.Vzsisa method) vol_Einf_Vib1() (abipy.dfpt.vzsisa.Vzsisa method) vol_Einf_Vib2() (abipy.dfpt.vzsisa.Vzsisa method) vol_Einf_Vib2_forth() (abipy.dfpt.vzsisa.Vzsisa method) vol_Einf_Vib4() (abipy.dfpt.vzsisa.Vzsisa method) vol_Einf_Vib4_forth() (abipy.dfpt.vzsisa.Vzsisa method) vol_EinfVib1_forth() (abipy.dfpt.vzsisa.Vzsisa method) volume (abipy.ml.aseml.AseResults property) volume_animate() (abipy.display.mvtk.MayaviFieldAnimator method) volumes (abipy.dfpt.gruneisen.GrunsNcFile property) (abipy.dynamics.analyzer.ArrheniusEntry attribute) VpqFile (class in abipy.eph.vpq) VpqReader (class in abipy.eph.vpq) VpqRobot (class in abipy.eph.vpq) vsound_num_points (abipy.panels.ddb.DdbFilePanel attribute) vsound_qpt_norm (abipy.panels.ddb.DdbFilePanel attribute) vtaus (abipy.ppcodes.oncv_parser.OncvParser property) vxc (abipy.electrons.denpot.VxcNcFile property) VxcNcFile (class in abipy.electrons.denpot) VxcPotential (class in abipy.core.fields) Vzsisa (class in abipy.dfpt.vzsisa) VzsisaFlow (class in abipy.flowtk.vzsisa) VzsisaResults (class in abipy.flowtk.vzsisa) VzsisaWork (class in abipy.flowtk.vzsisa)

W

wait3D() (in module abipy.tools.elate.elastic) wal_sbk (abipy.electrons.fatbands.FatBandsFile property) walm_sbk (abipy.electrons.fatbands.FatBandsFile property) wann_centers (abipy.wannier90.abiwan.AbiwanFile property) wann_spreads (abipy.wannier90.abiwan.AbiwanFile property) Wannier90Input (class in abipy.wannier90.win) warning (abipy.panels.core.AbipyParameterized attribute) warning() (abipy.flowtk.nodes.NodeHistory method) warnings (abipy.ppcodes.base_parser.BaseParser attribute) (abipy.ppcodes.base_parser.BaseParser property) wdg_box() (abipy.panels.core.AbipyParameterized method) wdg_exts_with_get_panel() (abipy.panels.core.AbipyParameterized method) website_url (abipy.abio.abivar_database.variables.Variable property) weight (abipy.core.kpoints.Kpoint property) weights (abipy.core.kpoints.KpointList property) (abipy.core.kpoints.Ktables attribute) WFK (abipy.abio.enums.RUNL attribute) wfk_filepath (abipy.flowtk.tasks.OpticTask property) WFK_TASK (class in abipy.abio.enums) WfkFile (class in abipy.waves.wfkfile) what_list (abipy.dynamics.hist.HistRobot property) widget2py() (in module abipy.display.utils) wikilink (abipy.abio.abivar_database.variables.Variable property) with_becs (abipy.flowtk.dfpt_flows.ConvBecsEpsResults attribute) with_flexoe (abipy.flowtk.dfpt_flows.ConvBecsEpsResults attribute) with_gaps (abipy.panels.core.PanelWithElectronBands attribute) (abipy.panels.electrons.CompareEbandsWithMP attribute) with_kpoints_plot (abipy.panels.core.PanelWithElectronBands attribute) with_points_along_path() (abipy.electrons.arpes.ArpesPlotter method) (abipy.electrons.ebands.ElectronBands method) with_quad (abipy.flowtk.dfpt_flows.ConvBecsEpsResults attribute) wlabel_from_units() (in module abipy.core.abinit_units) wmesh (abipy.dfpt.phonons.PhdosReader property) (abipy.electrons.bse.MdfReader property) (abipy.electrons.optic.OpticNcFile property) Work (class in abipy.flowtk.works) workdir (abipy.ml.relax_scanner.RelaxScannerAnalyzer property) workdir_with_prefix() (in module abipy.tools.iotools) WorkPanel (class in abipy.panels.works) works (abipy.flowtk.flows.Flow property) WorkTaskSelector (class in abipy.panels.flows) WoutFile (class in abipy.wannier90.wout) wpoints (abipy.electrons.scr.ScrFile property) wrap_to_bz() (abipy.core.kpoints.Kpoint method) (in module abipy.core.kpoints) wrap_to_ws() (abipy.core.kpoints.Kpoint method) (in module abipy.core.kpoints) write() (abipy.abio.inputs.AbstractInput method) (abipy.abio.inputs.Cut3DInput method) (abipy.abio.inputs.MultiDataset method) (abipy.abio.robots.RobotPythonScript method) (abipy.dfpt.ddb.DdbFile method) (abipy.electrons.lobster.LobsterInput method) (abipy.flowtk.utils.File method) (abipy.ml.extxyz_generator.ExtxyzIOWriter method) write3DPlotData() (in module abipy.tools.elate.elastic) write_a2_bxsf() (abipy.eph.vpq.Polaron method) write_atoms() (in module abipy.ml.aseml) write_b2_bxsf() (abipy.eph.vpq.Polaron method) write_BORN() (in module abipy.dfpt.converters) write_chgcar() (abipy.electrons.denpot.DensityNcFile method) write_cif_file() (abipy.dfpt.msqdos.MsqDos method) write_cif_with_spglib_symms() (abipy.core.structure.Structure method) write_cube() (abipy.electrons.denpot.DensityNcFile method) write_df() (abipy.ml.aseml.MlBase method) write_fix_flow_script() (abipy.flowtk.flows.Flow method) write_jobfile() (abipy.flowtk.tasks.TaskManager method) write_json() (abipy.ml.aseml.MlBase method) write_json_in_outdir() (abipy.flowtk.nodes.Node method) write_json_in_workdir() (abipy.flowtk.nodes.Node method) write_magres() (abipy.electrons.orbmag.OrbmagAnalyzer method) write_notebook() (abipy.abio.abivars.AbinitInputFile method) (abipy.abio.outputs.AbinitLogFile method) (abipy.abio.outputs.AbinitOutputFile method) (abipy.abio.outputs.AboRobot method) (abipy.abio.timer.AbinitTimerParser method) (abipy.core.mixins.NotebookWriter method) (abipy.core.restapi.DatabaseStructures method) (abipy.core.structure.Structure method) (abipy.dfpt.anaddbnc.AnaddbNcFile method) (abipy.dfpt.anaddbnc.AnaddbNcRobot method) (abipy.dfpt.ddb.DdbFile method) (abipy.dfpt.ddb.DdbRobot method) (abipy.dfpt.gruneisen.GrunsNcFile method) (abipy.dfpt.phonons.PhbstFile method) (abipy.dfpt.phonons.PhdosFile method) (abipy.dfpt.phonons.PhononBandsPlotter method) (abipy.dfpt.phonons.PhononDosPlotter method) (abipy.dfpt.vsound.SoundVelocity method) (abipy.dynamics.cpx.EvpFile method) (abipy.dynamics.hist.HistFile method) (abipy.dynamics.hist.HistRobot method) (abipy.electrons.arpes.ArpesPlotter method) (abipy.electrons.bse.MdfFile method) (abipy.electrons.ebands.ElectronBandsPlotter method) (abipy.electrons.ebands.ElectronDosPlotter method) (abipy.electrons.eskw.EskwFile method) (abipy.electrons.fatbands.FatBandsFile method) (abipy.electrons.fold2bloch.Fold2BlochNcfile method) (abipy.electrons.gsr.GsrFile method) (abipy.electrons.gw.SigresFile method) (abipy.electrons.gw.SigresRobot method) (abipy.electrons.gwr.GwrFile method) (abipy.electrons.gwr.GwrRobot method) (abipy.electrons.lobster.CoxpFile method) (abipy.electrons.lobster.ICoxpFile method) (abipy.electrons.lobster.LobsterAnalyzer method) (abipy.electrons.lobster.LobsterDoscarFile method) (abipy.electrons.optic.OpticNcFile method) (abipy.electrons.optic.OpticRobot method) (abipy.electrons.psps.PspsFile method) (abipy.electrons.psps.PspsRobot method) (abipy.electrons.scr.ScrFile method) (abipy.eph.a2f.A2fFile method) (abipy.eph.a2f.A2fRobot method) (abipy.eph.gkq.GkqFile method) (abipy.eph.gkq.GkqRobot method) (abipy.eph.gpath.GpathFile method) (abipy.eph.gpath.GpathRobot method) (abipy.eph.gstore.GstoreRobot method) (abipy.eph.gwan.GstoreRobot method) (abipy.eph.rta.RtaFile method) (abipy.eph.rta.RtaRobot method) (abipy.eph.sigeph.SigEPhFile method) (abipy.eph.sigeph.SigEPhRobot method) (abipy.eph.transportfile.TransportFile method) (abipy.eph.v1qavg.V1qAvgFile method) (abipy.eph.v1qavg.V1qAvgRobot method) (abipy.eph.v1qnu.V1qnuFile method) (abipy.eph.v1sym.V1symFile method) (abipy.eph.vpq.VpqFile method) (abipy.eph.vpq.VpqRobot method) (abipy.eph.wr.WrNcFile method) (abipy.ppcodes.oncv_plotter.MultiOncvPlotter method) (abipy.ppcodes.oncv_plotter.OncvPlotter method) (abipy.wannier90.abiwan.AbiwanFile method) (abipy.wannier90.abiwan.AbiwanRobot method) (abipy.wannier90.wout.WoutFile method) (abipy.waves.wfkfile.WfkFile method)

write_open_notebook() (abipy.flowtk.flows.Flow method) write_output_file_for_abinit() (abipy.ml.aseml.MlRelaxer method) write_phonopy_qha_inputs() (abipy.dfpt.qha.AbstractQHA method) write_script() (abipy.ml.aseml.MlBase method) write_tdep_lotosplitting() (in module abipy.dfpt.converters) write_traj() (abipy.ml.aseml.MlBase method) write_vib_file() (abipy.core.structure.Structure method) write_xdatcar() (abipy.dynamics.hist.HistFile method) write_xsf() (abipy.electrons.denpot.DensityNcFile method) write_xyz() (abipy.dynamics.cpx.Qe2Extxyz method) writeHeader() (in module abipy.tools.elate.elastic) writelines() (abipy.flowtk.utils.File method) writePolarPlotData() (in module abipy.tools.elate.elastic) WrNcFile (class in abipy.eph.wr) wti_from_nids() (abipy.flowtk.flows.Flow method) wvols_qibz (abipy.dfpt.gruneisen.GrunsNcFile property)

X

xc (abipy.electrons.gsr.GsrFile property) XcDecorator (class in abipy.abio.decorators) XLABELS (abipy.electrons.gw.SigresRobot attribute) (abipy.electrons.gwr.GwrRobot attribute) xsf_write_data() (in module abipy.iotools.xsf)

xsf_write_structure() (in module abipy.iotools.xsf) xsf_write_structure_and_data_to_path() (in module abipy.iotools.xsf) xy_energies_for_keys() (abipy.ml.aseml.AseResultsComparator method) xy_forces_for_keys() (abipy.ml.aseml.AseResultsComparator method) xy_stress_for_keys() (abipy.ml.aseml.AseResultsComparator method)

Y

yaml_dump() (in module abipy.tools.iotools) YAML_FILE (abipy.flowtk.tasks.TaskManager attribute) yaml_read_irred_perts() (in module abipy.flowtk.abiinspect) yaml_read_kpoints() (in module abipy.flowtk.abiinspect) yaml_safe_load() (in module abipy.tools.iotools) yaml_safe_load_path() (in module abipy.tools.iotools) yaml_tag (abipy.flowtk.events.DilatmxError attribute) (abipy.flowtk.events.NscfConvergenceWarning attribute) (abipy.flowtk.events.RelaxConvergenceWarning attribute) (abipy.flowtk.events.ScfConvergenceWarning attribute) yaml_unsafe_load() (in module abipy.tools.iotools) YamlDoc (class in abipy.flowtk.abiinspect) YamlTokenizer (class in abipy.flowtk.abiinspect) YamlTokenizerError yield_atoms() (abipy.dynamics.cpx.Qe2Extxyz method) yield_atoms_filepath() (abipy.ml.extxyz_generator.ExtxyzIOWriter method) yield_ebands_figs() (abipy.core.mixins.Has_ElectronBands method) yield_ebands_plotly_figs() (abipy.core.mixins.Has_ElectronBands method) yield_figs() (abipy.abio.abivars.AbinitInputFile method) (abipy.abio.outputs.AbinitLogFile method) (abipy.abio.outputs.AbinitOutputFile method) (abipy.abio.outputs.AboRobot method) (abipy.abio.timer.AbinitTimerParser method) (abipy.core.mixins.NotebookWriter method) (abipy.core.restapi.DatabaseStructures method) (abipy.core.structure.Structure method) (abipy.dfpt.anaddbnc.AnaddbNcFile method) (abipy.dfpt.anaddbnc.AnaddbNcRobot method) (abipy.dfpt.ddb.DdbFile method) (abipy.dfpt.ddb.DdbRobot method) (abipy.dfpt.gruneisen.GrunsNcFile method) (abipy.dfpt.phonons.PhbstFile method) (abipy.dfpt.phonons.PhdosFile method) (abipy.dfpt.phonons.PhononBandsPlotter method) (abipy.dfpt.phonons.PhononDosPlotter method) (abipy.dfpt.vsound.SoundVelocity method) (abipy.dynamics.analyzer.DiffusionDataList method) (abipy.dynamics.cpx.EvpFile method) (abipy.dynamics.hist.HistFile method) (abipy.dynamics.hist.HistRobot method) (abipy.electrons.arpes.ArpesPlotter method) (abipy.electrons.bse.MdfFile method) (abipy.electrons.ebands.ElectronBandsPlotter method) (abipy.electrons.ebands.ElectronDosPlotter method) (abipy.electrons.eskw.EskwFile method) (abipy.electrons.fatbands.FatBandsFile method) (abipy.electrons.fold2bloch.Fold2BlochNcfile method) (abipy.electrons.gsr.GsrFile method) (abipy.electrons.gw.SigresFile method) (abipy.electrons.gw.SigresRobot method) (abipy.electrons.gwr.GwrFile method) (abipy.electrons.gwr.GwrRobot method) (abipy.electrons.lobster.CoxpFile method) (abipy.electrons.lobster.ICoxpFile method) (abipy.electrons.lobster.LobsterAnalyzer method) (abipy.electrons.lobster.LobsterDoscarFile method) (abipy.electrons.optic.OpticNcFile method) (abipy.electrons.optic.OpticRobot method) (abipy.electrons.psps.PspsFile method) (abipy.electrons.psps.PspsRobot method) (abipy.electrons.scr.ScrFile method) (abipy.eph.a2f.A2fFile method) (abipy.eph.a2f.A2fRobot method) (abipy.eph.gkq.GkqFile method) (abipy.eph.gkq.GkqRobot method) (abipy.eph.gpath.GpathFile method) (abipy.eph.gpath.GpathRobot method) (abipy.eph.gstore.GstoreRobot method) (abipy.eph.gwan.GstoreRobot method) (abipy.eph.rta.RtaFile method) (abipy.eph.rta.RtaRobot method) (abipy.eph.sigeph.SigEPhFile method) (abipy.eph.sigeph.SigEPhRobot method) (abipy.eph.transportfile.TransportFile method) (abipy.eph.v1qavg.V1qAvgFile method) (abipy.eph.v1qavg.V1qAvgRobot method) (abipy.eph.v1qnu.V1qnuFile method) (abipy.eph.v1sym.V1symFile method) (abipy.eph.vpq.VpqFile method) (abipy.eph.vpq.VpqRobot method) (abipy.eph.wr.WrNcFile method) (abipy.ml.aseml.AseMdLog method) (abipy.ppcodes.oncv_plotter.MultiOncvPlotter method) (abipy.ppcodes.oncv_plotter.OncvPlotter method) (abipy.wannier90.abiwan.AbiwanFile method) (abipy.wannier90.abiwan.AbiwanRobot method) (abipy.wannier90.wout.WoutFile method) (abipy.waves.wfkfile.WfkFile method)

yield_phbands_figs() (abipy.core.mixins.Has_PhononBands method) yield_phbands_plotly_figs() (abipy.core.mixins.Has_PhononBands method) yield_plotly_figs() (abipy.abio.outputs.AbinitOutputFile method) (abipy.dfpt.ddb.DdbFile method) (abipy.dfpt.ddb.DdbRobot method) (abipy.dfpt.phonons.PhbstFile method) (abipy.dfpt.phonons.PhdosFile method) (abipy.dfpt.phonons.PhononBandsPlotter method) (abipy.dfpt.phonons.PhononDosPlotter method) (abipy.dynamics.hist.HistFile method) (abipy.electrons.ebands.ElectronBandsPlotter method) (abipy.electrons.fatbands.FatBandsFile method) (abipy.electrons.gsr.GsrFile method) yield_structure_figs() (abipy.core.mixins.Has_Structure method) yield_structure_plotly_figs() (abipy.core.mixins.Has_Structure method) YLABELS (abipy.electrons.gw.SigresRobot attribute) (abipy.electrons.gwr.GwrRobot attribute) ylims_ev (abipy.panels.electrons.CompareEbandsWithMP attribute) Young() (abipy.tools.elate.elastic.Elastic method) (abipy.tools.elate.elastic.ElasticOrtho method) YOUNG3D() (in module abipy.tools.elate.elastic) Young_2() (abipy.tools.elate.elastic.Elastic method)

Z

z (abipy.panels.oncvpsp_gui.OncvInput attribute) Z (abipy.ppcodes.oncv_parser.OncvParser attribute) ZeemanData (class in abipy.flowtk.finitediff) Zeffs (class in abipy.dfpt.ddb) ZeffsList (class in abipy.dfpt.ddb) zero_point_energy (abipy.dfpt.phonons.PhononDos property) zeros() (abipy.core.gsphere.GSphere method) (abipy.core.mesh3d.Mesh3D method)

zeta (abipy.core.fields.Density property) zincblende() (abipy.core.structure.Structure class method) zip_sort() (in module abipy.ml.aseml) zsisa (abipy.dfpt.qha_general_stress.QhaModel attribute) zsisa_slab (abipy.dfpt.qha_general_stress.QhaModel attribute) ZsisaFlow (class in abipy.flowtk.zsisa) ZsisaResults (class in abipy.flowtk.zsisa) ZsisaWork (class in abipy.flowtk.zsisa) ZstarTensor (class in abipy.tools.tensors)