make errors  [SOLVED]

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evan
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Joined: Sun Oct 21, 2012 4:13 am

make errors

Post by evan » Mon Sep 07, 2015 6:01 am

Dear all

I encountered a problem when I am compiling the newest released Abinit codes (version 7.10.4) in the cluster. The error information is followed and the config.log file is attached.

How can I fix the errors？
Thank you advance.

evan
University of South China

../../src/41_xc_lowlevel/lib41_xc_lowlevel.a(libxc_tools.o): In function `xc_f90_functional_get_number_':
/export1/home/maofei/src/abinit_7.10.4/src/41_xc_lowlevel/libxc_tools.c:60: undefined reference to `xc_functional_get_number'
../../src/41_xc_lowlevel/lib41_xc_lowlevel.a(libxc_tools.o): In function `xc_f90_functional_get_name_':
/export1/home/maofei/src/abinit_7.10.4/src/41_xc_lowlevel/libxc_tools.c:41: undefined reference to `xc_functional_get_name'
make[3]: *** [abinit] Error 1
make[3]: Leaving directory `/export1/home/maofei/src/abinit_7.10.4/src/98_main'
make[2]: *** [all-recursive] Error 1
make[2]: Leaving directory `/export1/home/maofei/src/abinit_7.10.4/src'
make[1]: *** [all-recursive] Error 1
make[1]: Leaving directory `/export1/home/maofei/src/abinit_7.10.4'
make: *** [all] Error 2
Attachments
config.log
configure file
(141.78 KiB) Downloaded 373 times
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jbeuken
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Re: make errors

Post by jbeuken » Mon Sep 07, 2015 9:03 pm

Hi,

in the config.log, I see some problems in the configure command :

Code: Select all

  $ ./configure --prefix=/export1/home/maofei/opt/abinit_v7.10/sopt2 FC=ifort CC=icc CXX=icpc FCFLAGS=-fPIC --with-tardir=/export1/home/maofei/src/plugins --enable-64bit-flags=yes --with-trio-flavor=netcdf+etsf_io+fox --with-netcdf-incs=-I/export1/home/maofei/opt/oct_local/include --with-netcdf-libs=-L/export1/home/maofei/opt/oct_local/lib  -lnetcdff -lnetcdf --with-fft-flavor=fftw3 --with-fft-incs=-I/export1/home/maofei/opt/fftw/include --with-fft-libs=-L/export1/home/maofei/opt/fftw/lib  -lfftw3 --with-dft-flavor=atompaw+bigdft+libxc+wannier90 --with-libxc-incs=-I/export1/home/maofei/opt/lixc-2.02/include --with-libxc-libs=-L/export1/home/maofei/opt/lixc-2.02/lib  -lxc --with-atompaw-bins=/export1/home/maofei/opt/atompaw/bin --with-atompaw-libs=-L/export1/home/maofei/opt/atompaw/lib  -latompaw --with-linalg-flavor=mkl --with-linalg-libs=-L/export1/home/maofei/intel/Compiler/11.1/069/mkl/lib/em64t -Wl,--start-group -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -Wl,--end-group --enable-gw-dpc=yes --with-fc-vendor=intel --with-fc-version=11.1


1) -with-fc-version=11.1
version 11.1 is no more supported with abinit 7.10

2) perhaps, there is a typo in the path of libxc fallback :

/export1/home/maofei/opt/lixc-2.02/lib


regards

jmb
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Jean-Michel Beuken
Computer Scientist
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evan
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Re: make errors

Post by evan » Tue Sep 08, 2015 11:50 am

Dear jbeuken

Thank you for your reply, the ifort compiler of version 11.1.069 is available on the clusters, so i want to what is the latest version of abinit codes supported by ifort 11.1 compiler, then I can compile the abinit codes with ifort 11.1.

I have check the path of libxc library, it is right.
Regards

evan
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jbeuken
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Re: make errors

Post by jbeuken » Tue Sep 08, 2015 7:36 pm

Hi,

You can't use ifort 11 to compile abinit 7

for intel compilers, only these versions are supported : >= 12.1.7, >= 13.1.3, >= 14.0.4, == 15.0.3.187

regards

jmb
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evan
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Re: make errors

Post by evan » Wed Sep 09, 2015 2:50 am

Dear jbeuken

Is there any other compilers support abinit 7, how about gfortran compiler.
Regards

evan
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jbeuken
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Re: make errors

Post by jbeuken » Wed Sep 09, 2015 7:56 pm

officially, gcc >= 4.6
but abinit 7.10.x works with gcc 4.8 or 4.9

jmb
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Jean-Michel Beuken
Computer Scientist
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evan
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Re: make errors

Post by evan » Thu Sep 10, 2015 3:48 am

Dear jbeuken

Thank you for your kind replies.
Regards

evan
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evan
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Re: make errors

Post by evan » Sun Sep 13, 2015 2:34 pm

Dear jbeuken
I compile the abinit 7.10.4 with ifort (version 15.0), but the “make” processes get stuck at this points:

ifort: command line remark #10010: option '-vec-report0' is deprecated and will be removed in a future release. See '-help deprecated'

How to fix the problem.
Regards

evan
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Jordan
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Joined: Tue May 07, 2013 9:47 am

Re: make errors  [SOLVED]

Post by Jordan » Wed Sep 23, 2015 9:34 am

The depreciated message does not mean the compilation is stuck.
Depending on the file it is actually compiling, the compilation can be long if many optimizations are required.
To solve the issue, you can compile by hand the file with less or no optimization.
Run make
when it gets stuck kill the process
go to the directory make was
copy pas the last make line information typically something like mpif90 -I. -I.. ../../src/xx_xxxx/yyyy.F90 ......
Remove the -O2 or -O3 or -xHOST and replace it by -O0 or -O1
Then go back where you type make and make
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