Note
Go to the end to download the full example code.
G0W0 flow with factory functions
G0W0 corrections with the HT interface.
import sys
import os
import abipy.data as abidata
import abipy.flowtk as flowtk
from abipy import abilab
def build_flow(options):
# Init structure and pseudos.
structure = abilab.Structure.from_file(abidata.cif_file("si.cif"))
pseudos = abidata.pseudos("14si.pspnc")
# Working directory (default is the name of the script with '.py' removed and "run_" replaced by "flow_")
if not options.workdir:
options.workdir = os.path.basename(sys.argv[0]).replace(".py", "").replace("run_", "flow_")
# Initialize the flow.
flow = flowtk.Flow(options.workdir, manager=options.manager)
scf_kppa = 120
nscf_nband = 40
ecut, ecuteps, ecutsigx = 6, 2, 4
#scr_nband = 50
#sigma_nband = 50
multi = abilab.g0w0_with_ppmodel_inputs(
structure, pseudos, scf_kppa, nscf_nband, ecuteps, ecutsigx,
ecut=ecut, shifts=(0, 0, 0), # By default the k-mesh is shifted! TODO: Change default?
accuracy="normal", spin_mode="unpolarized", smearing=None,
#ppmodel="godby", charge=0.0, scf_algorithm=None, inclvkb=2, scr_nband=None,
#sigma_nband=None, gw_qprange=1):
)
#multi.set_vars(paral_kgb=1)
scf_input, nscf_input, scr_input, sigma_input = multi.split_datasets()
work = flowtk.G0W0Work(scf_input, nscf_input, scr_input, sigma_input)
flow.register_work(work)
return flow
# This block generates the thumbnails in the Abipy gallery.
# You can safely REMOVE this part if you are using this script for production runs.
if os.getenv("READTHEDOCS", False):
__name__ = None
import tempfile
options = flowtk.build_flow_main_parser().parse_args(["-w", tempfile.mkdtemp()])
build_flow(options).graphviz_imshow()
@flowtk.flow_main
def main(options):
"""
This is our main function that will be invoked by the script.
flow_main is a decorator implementing the command line interface.
Command line args are stored in `options`.
"""
return build_flow(options)
if __name__ == "__main__":
sys.exit(main())
Run the script with:
run_ht_si_g0w0ppm.py -s
The last task w0_t3 is the SigmaTask who has produced a netcdf file with the GW results
as you can we with the command:
abirun.py flow_ht_si_g0w0ppm/ listext SIGRES
Let’s print the QP results with:
abiopen.py flow_ht_si_g0w0ppm/w0/t3/outdata/out_SIGRES.nc -p
================================= File Info =================================
Name: out_SIGRES.nc
Directory: /Users/gmatteo/git_repos/abipy/abipy/examples/flows/flow_ht_si_g0w0ppm/w0/t3/outdata
Size: 254.07 kb
Access Time: Sat Dec 9 19:16:05 2017
Modification Time: Sat Dec 9 15:16:15 2017
Change Time: Sat Dec 9 15:16:15 2017
================================= Structure =================================
Full Formula (Si2)
Reduced Formula: Si
abc : 3.866975 3.866975 3.866975
angles: 60.000000 60.000000 60.000000
Sites (2)
# SP a b c
--- ---- ---- ---- ----
0 Si 0 0 0
1 Si 0.25 0.25 0.25
Abinit Spacegroup: spgid: 0, num_spatial_symmetries: 48, has_timerev: True, symmorphic: True
============================== Kohn-Sham bands ==============================
Number of electrons: 8.0, Fermi level: 5.963 [eV]
nsppol: 1, nkpt: 8, mband: 40, nspinor: 1, nspden: 1
smearing scheme: none, tsmear_eV: 0.272, occopt: 1
Direct gap:
Energy: 2.512 [eV]
Initial state: spin=0, kpt=[+0.000, +0.000, +0.000], weight: 0.016, band=3, eig=5.640, occ=2.000
Final state: spin=0, kpt=[+0.000, +0.000, +0.000], weight: 0.016, band=4, eig=8.152, occ=0.000
Fundamental gap:
Energy: 0.646 [eV]
Initial state: spin=0, kpt=[+0.000, +0.000, +0.000], weight: 0.016, band=3, eig=5.640, occ=2.000
Final state: spin=0, kpt=[+0.500, +0.500, +0.000], weight: 0.047, band=4, eig=6.286, occ=0.000
Bandwidth: 11.867 [eV]
Valence minimum located at:
spin=0, kpt=[+0.000, +0.000, +0.000], weight: 0.016, band=0, eig=-6.227, occ=2.000
Valence maximum located at:
spin=0, kpt=[+0.000, +0.000, +0.000], weight: 0.016, band=3, eig=5.640, occ=2.000
============================ QP direct gaps in eV ============================
QP_dirgap: 3.000 for K-point: [+0.000, +0.000, +0.000], spin: 0
QP_dirgap: 3.087 for K-point: [+0.250, +0.000, +0.000], spin: 0
QP_dirgap: 3.068 for K-point: [+0.500, +0.000, +0.000], spin: 0
QP_dirgap: 3.421 for K-point: [+0.250, +0.250, +0.000], spin: 0
QP_dirgap: 4.165 for K-point: [+0.500, +0.250, +0.000], spin: 0
QP_dirgap: 4.206 for K-point: [-0.250, +0.250, +0.000], spin: 0
QP_dirgap: 4.003 for K-point: [+0.500, +0.500, +0.000], spin: 0
QP_dirgap: 8.683 for K-point: [-0.250, +0.500, +0.250], spin: 0
============== QP results for each k-point and spin (All in eV) ==============
K-point: [+0.000, +0.000, +0.000], spin: 0
band e0 qpe qpe_diago vxcme sigxme sigcmee0 vUme ze0
1 1 5.640 5.547 5.520 -11.156 -12.870 1.594 0.0 0.776
2 2 5.640 5.547 5.521 -11.156 -12.870 1.594 0.0 0.776
3 3 5.640 5.547 5.521 -11.156 -12.870 1.594 0.0 0.776
4 4 8.152 8.547 8.662 -9.969 -5.622 -3.837 0.0 0.774
5 5 8.152 8.547 8.662 -9.969 -5.622 -3.837 0.0 0.774
6 6 8.152 8.547 8.662 -9.969 -5.622 -3.837 0.0 0.774
K-point: [+0.250, +0.000, +0.000], spin: 0
band e0 qpe qpe_diago vxcme sigxme sigcmee0 vUme ze0
2 2 4.870 4.751 4.716 -10.936 -12.831 1.741 0.0 0.772
3 3 4.870 4.751 4.716 -10.936 -12.831 1.741 0.0 0.772
4 4 7.449 7.838 7.949 -10.031 -5.725 -3.806 0.0 0.778
5 5 9.108 9.534 9.660 -10.013 -5.381 -4.079 0.0 0.771
6 6 9.108 9.534 9.660 -10.013 -5.381 -4.079 0.0 0.771
K-point: [+0.500, +0.000, +0.000], spin: 0
band e0 qpe qpe_diago vxcme sigxme sigcmee0 vUme ze0
2 2 4.431 4.282 4.238 -10.908 -13.077 1.976 0.0 0.769
3 3 4.431 4.282 4.238 -10.908 -13.077 1.976 0.0 0.769
4 4 6.972 7.350 7.456 -10.016 -5.844 -3.687 0.0 0.781
5 5 8.982 9.410 9.534 -9.621 -4.942 -4.127 0.0 0.775
6 6 8.982 9.410 9.534 -9.621 -4.942 -4.127 0.0 0.775
K-point: [+0.250, +0.250, +0.000], spin: 0
band e0 qpe qpe_diago vxcme sigxme sigcmee0 vUme ze0
2 2 3.743 3.571 3.518 -10.603 -12.883 2.056 0.0 0.764
3 3 3.743 3.571 3.518 -10.603 -12.883 2.056 0.0 0.764
4 4 6.692 6.993 7.076 -9.352 -5.373 -3.595 0.0 0.783
5 5 8.669 9.035 9.139 -9.203 -4.548 -4.184 0.0 0.779
K-point: [+0.500, +0.250, +0.000], spin: 0
band e0 qpe qpe_diago vxcme sigxme sigcmee0 vUme ze0
2 2 2.099 1.893 1.825 -10.130 -12.839 2.435 0.0 0.752
3 3 3.427 3.242 3.184 -10.596 -13.077 2.238 0.0 0.761
4 4 7.086 7.408 7.496 -9.224 -5.065 -3.748 0.0 0.784
5 5 10.015 10.397 10.510 -9.594 -4.730 -4.369 0.0 0.771
K-point: [-0.250, +0.250, +0.000], spin: 0
band e0 qpe qpe_diago vxcme sigxme sigcmee0 vUme ze0
2 2 1.887 1.667 1.594 -9.982 -12.769 2.493 0.0 0.751
3 3 4.302 4.157 4.113 -10.820 -12.927 1.917 0.0 0.769
4 4 7.983 8.363 8.470 -9.567 -5.113 -3.966 0.0 0.779
5 5 10.350 10.800 10.942 -10.046 -4.859 -4.595 0.0 0.760
K-point: [+0.500, +0.500, +0.000], spin: 0
band e0 qpe qpe_diago vxcme sigxme sigcmee0 vUme ze0
2 2 2.784 2.567 2.497 -10.480 -13.270 2.503 0.0 0.755
3 3 2.784 2.567 2.497 -10.480 -13.270 2.503 0.0 0.755
4 4 6.286 6.571 6.647 -9.003 -5.038 -3.603 0.0 0.787
5 5 6.286 6.571 6.647 -9.003 -5.038 -3.603 0.0 0.787
K-point: [-0.250, +0.500, +0.250], spin: 0
band e0 qpe qpe_diago vxcme sigxme sigcmee0 vUme ze0
2 2 1.787 1.557 1.481 -9.917 -12.751 2.527 0.0 0.749
3 3 1.787 1.557 1.481 -9.917 -12.751 2.527 0.0 0.749
4 4 9.875 10.241 10.347 -9.523 -4.876 -4.176 0.0 0.775
5 5 9.875 10.241 10.347 -9.523 -4.876 -4.176 0.0 0.775
we can also plot the QP data as function of the initial KS energy with ipython:
abiopen.py flow_ht_si_g0w0ppm/w0/t3/outdata/out_SIGRES.nc
In [1]: %matplotlib
In [2]: abifile.plot_qps_vs_e0()
Total running time of the script: (0 minutes 0.267 seconds)